mRNA_M-pyrifera_M_contig120164.4157.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120164.4157.1
Unique NamemRNA_M-pyrifera_M_contig120164.4157.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120164.4157.1 vs. uniprot
Match: A0A2P6NA83_9EUKA (Coiled-coil domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NA83_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 8.800e-11
Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 1 
Query:   31 SDDEILSQLPEYFYDPEVDVVERLLQSMP----EEGTDQ---------------------YLADLIKVRNRQHDIVNSQLSDRVMSNYDAFVQGMMKIKELGDDLKTTAVLCRNGR 303
            +D+E+L+ LP   +   +DVVE + +S+P    +E  D+                     YL   +K + R  D +NS+LS++VMSNY+AFV+GM +I ELG DL+ +A +C++GR
Sbjct:  808 TDEEVLASLPPEIFQENLDVVELIFRSIPKDYGQESDDRKAEDGKKYVAHVDPSMLMDEAYLELQLKEKERCLDAINSKLSNKVMSNYNAFVKGMTQIHELGMDLEQSAAVCKDGR 923
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BLAST of mRNA_M-pyrifera_M_contig120164.4157.1 vs. uniprot
Match: A0A5P1F0D2_ASPOF (Uncharacterized protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1F0D2_ASPOF)

HSP 1 Score: 61.6 bits (148), Expect = 6.790e-9
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:   31 SDDEILSQLPEYFYDPEVDVVERLLQSMPEEGTDQ-YLADLIKVRNRQHDIVNSQLSDRVMSNYDAFVQGMMKIKELGDDLKTTAVLCRNGR 303
            S D ++ +L E FY+ + D V+ +L+++P E  D  Y  +   +R  Q D +  +LS  VM +++  V+GM  + EL  DLK   V+CRNGR
Sbjct:  121 SQDHVIEELEENFYEEDFDPVKYILENIPSEEADAFYFEEKATLRLLQLDRITERLSRHVMEHHEEMVKGMQLVMELEQDLKVANVICRNGR 212
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BLAST of mRNA_M-pyrifera_M_contig120164.4157.1 vs. uniprot
Match: A0A6I9R6R7_ELAGV (syndetin n=6 Tax=Magnoliopsida TaxID=3398 RepID=A0A6I9R6R7_ELAGV)

HSP 1 Score: 60.1 bits (144), Expect = 2.360e-8
Identity = 35/92 (38.04%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:   31 SDDEILSQLPEYFYDPEVDVVERLLQSMP-EEGTDQYLADLIKVRNRQHDIVNSQLSDRVMSNYDAFVQGMMKIKELGDDLKTTAVLCRNGR 303
            S D+++ +L E FY  + D V  +L+++P EE +  Y      +R  Q D +  QLS  VM +++  V+GM  + EL  DLK   V+CRNGR
Sbjct:  111 SQDQVIEELEEDFYQEDFDPVRHVLENIPSEENSATYFDQKSVLRLGQLDRIAEQLSRHVMEHHEEMVKGMQLVMELEQDLKVANVICRNGR 202
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120164.4157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2P6NA83_9EUKA8.800e-1136.21Coiled-coil domain-containing protein n=1 Tax=Plan... [more]
A0A5P1F0D2_ASPOF6.790e-936.96Uncharacterized protein n=2 Tax=Asparagus officina... [more]
A0A6I9R6R7_ELAGV2.360e-838.04syndetin n=6 Tax=Magnoliopsida TaxID=3398 RepID=A0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120164contigM-pyrifera_M_contig120164:233..535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score68.6
Seed ortholog evalue2e-09
Seed eggNOG ortholog691883.XP_009494470.1
Preferred nameCCDC132
Hectar predicted targeting categoryother localisation
GOsGO:0000149,GO:0000938,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0006810,GO:0008150,GO:0012505,GO:0016192,GO:0016197,GO:0031410,GO:0031982,GO:0032386,GO:0032388,GO:0032456,GO:0032879,GO:0032991,GO:0040012,GO:0040017,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048471,GO:0048518,GO:0048520,GO:0050789,GO:0050795,GO:0051049,GO:0051050,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055037,GO:0060341,GO:0065007,GO:0090325,GO:0090326,GO:0097708,GO:0099023,GO:1903649,GO:1903651,GO:1904809,GO:1904811,GO:1990745
EggNOG free text desc.endocytic recycling
EggNOG OGs38HPU@33154,KOG2939@1,KOG2939@2759
COG Functional cat.L
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.1481586-CDS-M-pyrifera_M_contig120164:232..5351622815721.1481586-CDS-M-pyrifera_M_contig120164:232..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120164 233..535 +
1692277537.8145247-CDS-M-pyrifera_M_contig120164:232..5351692277537.8145247-CDS-M-pyrifera_M_contig120164:232..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120164 233..535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120164.4157.1prot_M-pyrifera_M_contig120164.4157.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120164 233..535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120164.4157.1

>prot_M-pyrifera_M_contig120164.4157.1 ID=prot_M-pyrifera_M_contig120164.4157.1|Name=mRNA_M-pyrifera_M_contig120164.4157.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
LTREQVGPKESDDEILSQLPEYFYDPEVDVVERLLQSMPEEGTDQYLADL
IKVRNRQHDIVNSQLSDRVMSNYDAFVQGMMKIKELGDDLKTTAVLCRNG
R
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mRNA from alignment at M-pyrifera_M_contig120164:233..535+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120164.4157.1 ID=mRNA_M-pyrifera_M_contig120164.4157.1|Name=mRNA_M-pyrifera_M_contig120164.4157.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig120164:233..535+ (Macrocystis pyrifera P11B4 male)
CTGACTCGGGAGCAGGTGGGGCCGAAGGAGAGCGACGATGAGATCCTCAG
CCAGCTCCCCGAGTACTTCTACGATCCAGAGGTAGATGTCGTAGAGCGTC
TTCTGCAGAGCATGCCCGAAGAGGGCACGGACCAGTACCTGGCCGACCTC
ATCAAGGTGCGGAACCGCCAGCACGACATCGTCAACAGCCAGCTCTCCGA
CAGGGTAATGAGCAACTACGATGCGTTTGTGCAGGGAATGATGAAGATCA
AGGAGCTCGGCGACGACCTCAAGACAACCGCCGTCCTCTGCCGGAATGGA
AGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120164:233..535+

>mRNA_M-pyrifera_M_contig120164.4157.1 ID=mRNA_M-pyrifera_M_contig120164.4157.1|Name=mRNA_M-pyrifera_M_contig120164.4157.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig120164:233..535+ (Macrocystis pyrifera P11B4 male)
CTGACTCGGGAGCAGGTGGGGCCGAAGGAGAGCGACGATGAGATCCTCAG
CCAGCTCCCCGAGTACTTCTACGATCCAGAGGTAGATGTCGTAGAGCGTC
TTCTGCAGAGCATGCCCGAAGAGGGCACGGACCAGTACCTGGCCGACCTC
ATCAAGGTGCGGAACCGCCAGCACGACATCGTCAACAGCCAGCTCTCCGA
CAGGGTAATGAGCAACTACGATGCGTTTGTGCAGGGAATGATGAAGATCA
AGGAGCTCGGCGACGACCTCAAGACAACCGCCGTCCTCTGCCGGAATGGA
AGGCTGACTCGGGAGCAGGTGGGGCCGAAGGAGAGCGACGATGAGATCCT
CAGCCAGCTCCCCGAGTACTTCTACGATCCAGAGGTAGATGTCGTAGAGC
GTCTTCTGCAGAGCATGCCCGAAGAGGGCACGGACCAGTACCTGGCCGAC
CTCATCAAGGTGCGGAACCGCCAGCACGACATCGTCAACAGCCAGCTCTC
CGACAGGGTAATGAGCAACTACGATGCGTTTGTGCAGGGAATGATGAAGA
TCAAGGAGCTCGGCGACGACCTCAAGACAACCGCCGTCCTCTGCCGGAAT
GGAAGG
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