mRNA_M-pyrifera_M_contig120140.4154.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120140.4154.1
Unique NamemRNA_M-pyrifera_M_contig120140.4154.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120140.4154.1 vs. uniprot
Match: UPI001D79B2AA (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001D79B2AA)

HSP 1 Score: 63.2 bits (152), Expect = 1.310e-9
Identity = 30/80 (37.50%), Postives = 51/80 (63.75%), Query Frame = 1 
Query:  112 ALLSILFMQSFISMKTMFTGKAAIYLDSGIEIVSPAVGDEKRLQLRASYRQVDSRERFVALYLELHRIAAENGIDLVEFD 351
            A L I F      +  ++  K + YLD  IEI+ P + +EK ++LRA +RQ+++R +F +LY EL+R+ + NG+DL + +
Sbjct:  130 AALFITFTYGHAFVTDVYNYKISNYLDRTIEILRPKISEEKHIELRALFRQIETRNQFQSLYFELNRLGSNNGVDLPDIE 209
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120140.4154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001D79B2AA1.310e-937.50hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120140contigM-pyrifera_M_contig120140:79..438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size360
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.0252821-CDS-M-pyrifera_M_contig120140:78..4381622815721.0252821-CDS-M-pyrifera_M_contig120140:78..438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120140 79..438 -
1692277537.7581623-CDS-M-pyrifera_M_contig120140:78..4381692277537.7581623-CDS-M-pyrifera_M_contig120140:78..438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120140 79..438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120140.4154.1prot_M-pyrifera_M_contig120140.4154.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120140 79..438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120140.4154.1

>prot_M-pyrifera_M_contig120140.4154.1 ID=prot_M-pyrifera_M_contig120140.4154.1|Name=mRNA_M-pyrifera_M_contig120140.4154.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
LFSSLYRRLRGRGSSTSEMPRPVDAMPSRKVIAVTALALLSILFMQSFIS
MKTMFTGKAAIYLDSGIEIVSPAVGDEKRLQLRASYRQVDSRERFVALYL
ELHRIAAENGIDLVEFDYY*
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mRNA from alignment at M-pyrifera_M_contig120140:79..438-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120140.4154.1 ID=mRNA_M-pyrifera_M_contig120140.4154.1|Name=mRNA_M-pyrifera_M_contig120140.4154.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig120140:79..438- (Macrocystis pyrifera P11B4 male)
CTATTCTCGAGCCTCTATAGAAGGCTGCGGGGTCGAGGCAGTTCAACGAG
TGAAATGCCTAGGCCTGTTGATGCTATGCCATCGCGTAAGGTCATTGCGG
TAACTGCGCTTGCACTACTGTCAATCCTCTTCATGCAATCCTTCATCAGC
ATGAAGACGATGTTTACGGGAAAGGCGGCAATCTATTTGGATTCTGGTAT
AGAGATTGTTAGTCCAGCTGTGGGCGACGAGAAGCGGTTGCAGCTGCGAG
CGAGTTACCGACAAGTTGACTCGCGGGAGAGATTCGTTGCTCTCTATCTG
GAGCTTCACCGGATCGCGGCGGAAAATGGAATTGATCTGGTGGAATTTGA
TTATTACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120140:79..438-

>mRNA_M-pyrifera_M_contig120140.4154.1 ID=mRNA_M-pyrifera_M_contig120140.4154.1|Name=mRNA_M-pyrifera_M_contig120140.4154.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig120140:79..438- (Macrocystis pyrifera P11B4 male)
CTATTCTCGAGCCTCTATAGAAGGCTGCGGGGTCGAGGCAGTTCAACGAG
TGAAATGCCTAGGCCTGTTGATGCTATGCCATCGCGTAAGGTCATTGCGG
TAACTGCGCTTGCACTACTGTCAATCCTCTTCATGCAATCCTTCATCAGC
ATGAAGACGATGTTTACGGGAAAGGCGGCAATCTATTTGGATTCTGGTAT
AGAGATTGTTAGTCCAGCTGTGGGCGACGAGAAGCGGTTGCAGCTGCGAG
CGAGTTACCGACAAGTTGACTCGCGGGAGAGATTCGTTGCTCTCTATCTG
GAGCTTCACCGGATCGCGGCGGAAAATGGAATTGATCTGGTGGAATTTGA
TTATTACTGACTATTCTCGAGCCTCTATAGAAGGCTGCGGGGTCGAGGCA
GTTCAACGAGTGAAATGCCTAGGCCTGTTGATGCTATGCCATCGCGTAAG
GTCATTGCGGTAACTGCGCTTGCACTACTGTCAATCCTCTTCATGCAATC
CTTCATCAGCATGAAGACGATGTTTACGGGAAAGGCGGCAATCTATTTGG
ATTCTGGTATAGAGATTGTTAGTCCAGCTGTGGGCGACGAGAAGCGGTTG
CAGCTGCGAGCGAGTTACCGACAAGTTGACTCGCGGGAGAGATTCGTTGC
TCTCTATCTGGAGCTTCACCGGATCGCGGCGGAAAATGGAATTGATCTGG
TGGAATTTGATTATTACTGA
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