mRNA_M-pyrifera_M_contig1201.4152.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1201.4152.1
Unique NamemRNA_M-pyrifera_M_contig1201.4152.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig1201.4152.1 vs. uniprot
Match: A0A8F5PAS4_9CAUD (NADAR domain-containing protein n=9 Tax=Eneladusvirus TaxID=2560128 RepID=A0A8F5PAS4_9CAUD)

HSP 1 Score: 134 bits (336), Expect = 3.620e-37
Identity = 63/139 (45.32%), Postives = 83/139 (59.71%), Query Frame = 1
Query:    1 WYLCDIEYDGVTYNCAGQMMMAQKAALFGVTTTERRIKAIRDLADQKALGRTVSDFDDLVWERHRYNIVLKINFSKFRQYPKLRRQLAATGAKHITEASPYDLIWGIDFKADHPDACEPTRWCDRNQLGRILMDVRESL 417
            W+    E  G+T+NC+ Q MM  KA +F  T    ++      + QKALGR VS++DD +W   R+ IV     +KF Q  KL+ QL +TG  H+ EASPYD IWGI  K DHPDA  P +W   N LG +LM VR++L
Sbjct:   20 WHKASFELHGITFNCSEQYMMYAKAMVFNDTIIANKVLETSSQSKQKALGRQVSNYDDEIWNEVRFEIVYDACLAKFSQNEKLKEQLLSTGNLHLVEASPYDKIWGIGMKDDHPDATNPEKWDGLNLLGEVLMKVRDTL 158          
BLAST of mRNA_M-pyrifera_M_contig1201.4152.1 vs. uniprot
Match: UPI0003814038 (NADAR family protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI0003814038)

HSP 1 Score: 126 bits (316), Expect = 6.030e-34
Identity = 64/141 (45.39%), Postives = 81/141 (57.45%), Query Frame = 1
Query:    1 WYLCDIEYDGVTYNCAGQMMMAQKAALFGVTTTERRIKAIRDLADQKALGRTVSDFDDLVWERHRYNIVLKINFSKFRQYPKLRRQLAATGAKHITEASPYDLIWGIDFKADHPDACEPTRWCDRNQLGRILMDVRESLGA 423
            WY    E DG+TY  A   MMA+KA LFG      ++ A     + K +GR V  FDD +W++HR+NIV+K N  KF Q P+L+  L +TG + + EASP D IWGI   AD   A  P RW   N LG  LM+VR  L A
Sbjct:   43 WYDSPFESDGITYQTAEHYMMAEKARLFGDPQAAEKVIAAGTPGEAKKVGRGVRGFDDKIWQKHRFNIVVKANLLKFSQNPELKEFLLSTGKRVLVEASPVDRIWGIGLAADDNAAENPNRWKGLNLLGFALMEVRSQLAA 183          
BLAST of mRNA_M-pyrifera_M_contig1201.4152.1 vs. uniprot
Match: UPI0018CA04B6 (NADAR family protein n=1 Tax=Actinomadura viridis TaxID=58110 RepID=UPI0018CA04B6)

HSP 1 Score: 125 bits (315), Expect = 6.450e-34
Identity = 68/141 (48.23%), Postives = 84/141 (59.57%), Query Frame = 1
Query:    1 WYLCDIEYDGVTYNCAGQMMMAQKAALFGVTTTERRIKAIRDLADQKALGRTVSDFDDLVWERHRYNIVLKINFSKFRQYPKLRRQLAATGAKHITEASPYDLIWGIDFKADHPDACEPTRWCDRNQLGRILMDVRESLGA 423
            WY      DGVTY  A   MMA+KA LFG T T  +I A  D    KALGR V  FD+  W RHR++IV++ N +KF    + R  L +T  K + EASP D+IWGI F  D P+A  P++W   N LG  LMDVRE+L A
Sbjct:   34 WYPSPFTVDGVTYPTAEHYMMAEKARLFGDTATADQILAAEDPGRVKALGRRVRGFDEDTWVRHRFDIVVRGNIAKFGANERERDFLYSTTGKVLVEASPLDVIWGIGFGEDRPEARRPSQWRGLNLLGFALMDVREALRA 174          
BLAST of mRNA_M-pyrifera_M_contig1201.4152.1 vs. uniprot
Match: UPI001660B905 (NADAR family protein n=1 Tax=Streptomyces sp. CBMA152 TaxID=1896312 RepID=UPI001660B905)

HSP 1 Score: 124 bits (312), Expect = 2.290e-33
Identity = 67/141 (47.52%), Postives = 80/141 (56.74%), Query Frame = 1
Query:    1 WYLCDIEYDGVTYNCAGQMMMAQKAALFGVTTTERRIKAIRDLADQKALGRTVSDFDDLVWERHRYNIVLKINFSKFRQYPKLRRQLAATGAKHITEASPYDLIWGIDFKADHPDACEPTRWCDRNQLGRILMDVRESLGA 423
            W+      DGV Y  A   MMA KA LFG  + ER + +    A  K  GR V  FDD VW R RY+IV+  +  KF Q P LR  L ATG + + EASP D IWGI   AD P+A +P+RW   N LG  LMD RE+L A
Sbjct:   41 WWPSAFAVDGVEYATAEHWMMASKAQLFGDASAERAVLSATSPAAAKKAGRLVQGFDDAVWSRERYDIVVAGSVHKFSQDPALREYLLATGDRVLVEASPLDRIWGIGLAADAPEADDPSRWRGLNLLGFALMDAREALRA 181          
BLAST of mRNA_M-pyrifera_M_contig1201.4152.1 vs. uniprot
Match: A0A494XLL2_9BACL (NADAR family protein n=1 Tax=Cohnella endophytica TaxID=2419778 RepID=A0A494XLL2_9BACL)

HSP 1 Score: 124 bits (311), Expect = 3.730e-33
Identity = 60/139 (43.17%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    1 WYLCDIEYDGVTYNCAGQMMMAQKAALFGVTTTERRIKAIRDLADQKALGRTVSDFDDLVWERHRYNIVLKINFSKFRQYPKLRRQLAATGAKHITEASPYDLIWGIDFKADHPDACEPTRWCDRNQLGRILMDVRESL 417
            W+LC    DG+TY+CA Q MMA+KA LF        I + +   + K  GR VS FD ++WER  Y +V K N++KF Q P L   L +TG   + EASP D +WGI    +HP+A +P++W   N LG  L +VR+ L
Sbjct:   42 WWLCPFTIDGITYSCAEQYMMAEKARLFHDDKNLANIMSAKTPKEMKEFGRAVSGFDRVLWERQSYEVVKKGNYAKFSQNPDLWHYLKSTGNCILVEASPVDRVWGIGIGQEHPNAGDPSKWEGANLLGFALTEVRDEL 180          
BLAST of mRNA_M-pyrifera_M_contig1201.4152.1 vs. uniprot
Match: A0A1H7JRV3_9GAMM (NADAR domain-containing protein n=1 Tax=Pseudoxanthomonas sp. GM95 TaxID=1881043 RepID=A0A1H7JRV3_9GAMM)

HSP 1 Score: 124 bits (310), Expect = 5.270e-33
Identity = 65/144 (45.14%), Postives = 81/144 (56.25%), Query Frame = 1
Query:    1 WYLCDIEYDGVTYNCAGQMMMAQKAALFGVTTTERRIKAIRDLADQKALGRTVSDFDDLVWERHRYNIVLKINFSKFRQYPKLRRQLAATGAKHITEASPYDLIWGIDFKADHPDACEPTRWCDRNQLGRILMDVRESLGANRS 432
            WY    E DG+ Y  A   MMA+KA LF    T  RI   R+    KA GR V+ FDD+ W   R++IV++ NF+KF Q P+L   L  TG K + EASP D IWGI   AD P+A  P  W   N LG  LM VRE +  ++S
Sbjct:   44 WYAAPFELDGIIYPTAEHFMMAEKARLFSDEATRERILVARNPGAAKAFGREVTGFDDVAWNDARFDIVVRGNFAKFSQDPRLAEFLRVTGNKVLVEASPVDAIWGIGLAADAPEASSPHTWQGLNLLGFALMVVRERILLSKS 187          
BLAST of mRNA_M-pyrifera_M_contig1201.4152.1 vs. uniprot
Match: UPI001FD88194 (NADAR family protein n=1 Tax=Kibdelosporangium banguiense TaxID=1365924 RepID=UPI001FD88194)

HSP 1 Score: 122 bits (306), Expect = 1.890e-32
Identity = 64/144 (44.44%), Postives = 81/144 (56.25%), Query Frame = 1
Query:    1 WYLCDIEYDGVTYNCAGQMMMAQKAALFGVTTTERRIKAIRDLADQKALGRTVSDFDDLVWERHRYNIVLKINFSKFRQYPKLRRQLAATGAKHITEASPYDLIWGIDFKADHPDACEPTRWCDRNQLGRILMDVRESLGANRS 432
            W + D   DG  Y  A   MMA+KA LF       RI      AD K LGR V  FD  +WE+ RY+IV++ N +KF Q  + R  L ATG K + EA+P D+IWGI    D+P A +P RW  RN LG  LMD R +L  N++
Sbjct:   40 WLMRDFTVDGQVYRSAEHFMMAEKARLFSDDEMRERILDSATPADAKKLGRAVRGFDQGIWEKQRYDIVVRGNVAKFGQVGEYRAFLLATGEKVLVEAAPRDVIWGIGLGKDNPRALDPARWRGRNLLGFALMDARAALAQNKA 183          
BLAST of mRNA_M-pyrifera_M_contig1201.4152.1 vs. uniprot
Match: UPI0006E2E64A (NADAR family protein n=1 Tax=Streptacidiphilus griseoplanus TaxID=66896 RepID=UPI0006E2E64A)

HSP 1 Score: 121 bits (304), Expect = 1.990e-32
Identity = 65/140 (46.43%), Postives = 78/140 (55.71%), Query Frame = 1
Query:    1 WYLCDIEYDGVTYNCAGQMMMAQKAALFGVTTTERRIKAIRDLADQKALGRTVSDFDDLVWERHRYNIVLKINFSKFRQYPKLRRQLAATGAKHITEASPYDLIWGIDFKADHPDACEPTRWCDRNQLGRILMDVRESLG 420
            W+      +GV Y  A   MMA KA LFG      RI + R  A+ K LGR V  FDD VWER R+ +V+  N +KF Q P LRR L  TG + + EASP D +WGI   AD   A +P RWC  N LG  LM+ R  LG
Sbjct:   21 WWPSRFTVEGVEYASAEHWMMAGKARLFGDEAALGRILSARTPAEAKKLGRLVRGFDDAVWERERFRLVVAGNLAKFGQDPGLRRYLLGTGRRVLVEASPVDRVWGIGLVADDERAFDPARWCGLNLLGFALMEARGLLG 160          
BLAST of mRNA_M-pyrifera_M_contig1201.4152.1 vs. uniprot
Match: UPI001CCB45E4 (NADAR family protein n=1 Tax=Nannocystis pusilla TaxID=889268 RepID=UPI001CCB45E4)

HSP 1 Score: 122 bits (305), Expect = 2.150e-32
Identity = 67/141 (47.52%), Postives = 79/141 (56.03%), Query Frame = 1
Query:    1 WYLCDIEYDGVTYNCAGQMMMAQKAALFGVTTTERRIKAIRDLADQKALGRTVSDFDDLVWERHRYNIVLKINFSKFRQYPKLRRQLAATGAKHITEASPYDLIWGIDFKADHPDACEPTRWCDRNQLGRILMDVRESLGA 423
            W       DGVTY CA Q MMA+KA LFG   T  +I A       KALGR V+ F   VWER    IV++ N +KF Q P LR  L ATG K + EASP D IWG+  +AD P   + +RW  +N LG  LM VR  L A
Sbjct:   30 WTSSRFVVDGVTYGCAEQFMMAEKARLFGDEATRAKILATDSPRQHKALGREVAGFVQAVWERECLEIVVRGNRAKFGQDPDLRAALLATGDKLLVEASPLDRIWGVGLRADDPRIHDTSRWRGKNLLGEALMRVRAELRA 170          
BLAST of mRNA_M-pyrifera_M_contig1201.4152.1 vs. uniprot
Match: A0A2N3W2Y7_9ACTN (NADAR domain-containing protein n=4 Tax=Streptomyces TaxID=1883 RepID=A0A2N3W2Y7_9ACTN)

HSP 1 Score: 122 bits (306), Expect = 2.300e-32
Identity = 64/141 (45.39%), Postives = 79/141 (56.03%), Query Frame = 1
Query:    1 WYLCDIEYDGVTYNCAGQMMMAQKAALFGVTTTERRIKAIRDLADQKALGRTVSDFDDLVWERHRYNIVLKINFSKFRQYPKLRRQLAATGAKHITEASPYDLIWGIDFKADHPDACEPTRWCDRNQLGRILMDVRESLGA 423
            W+    E DGV Y  A   MMA KA LFG    ER     R  A+ K  GR V  FD+ VW+R RY IV+  +  KF Q P L+  L +TG + + EASP D IWGI   AD P+A +P++W   N LG  LM+ RE L A
Sbjct:   49 WWPSPFEVDGVAYATAEHWMMAAKARLFGDAEAERAALTARTPAEAKKAGRLVRGFDEAVWKRERYGIVVAGSLHKFGQSPDLKAYLLSTGTRVLVEASPLDRIWGIGLAADAPEAQDPSKWRGENLLGFALMEAREGLRA 189          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1201.4152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F5PAS4_9CAUD3.620e-3745.32NADAR domain-containing protein n=9 Tax=Eneladusvi... [more]
UPI00038140386.030e-3445.39NADAR family protein n=1 Tax=Hahella ganghwensis T... [more]
UPI0018CA04B66.450e-3448.23NADAR family protein n=1 Tax=Actinomadura viridis ... [more]
UPI001660B9052.290e-3347.52NADAR family protein n=1 Tax=Streptomyces sp. CBMA... [more]
A0A494XLL2_9BACL3.730e-3343.17NADAR family protein n=1 Tax=Cohnella endophytica ... [more]
A0A1H7JRV3_9GAMM5.270e-3345.14NADAR domain-containing protein n=1 Tax=Pseudoxant... [more]
UPI001FD881941.890e-3244.44NADAR family protein n=1 Tax=Kibdelosporangium ban... [more]
UPI0006E2E64A1.990e-3246.43NADAR family protein n=1 Tax=Streptacidiphilus gri... [more]
UPI001CCB45E42.150e-3247.52NADAR family protein n=1 Tax=Nannocystis pusilla T... [more]
A0A2N3W2Y7_9ACTN2.300e-3245.39NADAR domain-containing protein n=4 Tax=Streptomyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1201contigM-pyrifera_M_contig1201:27325..27762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score130.2
Seed ortholog evalue7.9e-28
Seed eggNOG ortholog1226994.AMZB01000136_gene5085
Preferred nameybiA
KEGG koko:K09935
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF1768)
EggNOG OGs1RCXE@1224,1S4UM@1236,1YG3X@136841,COG3236@2,COG5113@1
COG Functional cat.O
Best tax levelPseudomonas aeruginosa group
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.9543672-CDS-M-pyrifera_M_contig1201:27324..277621622815720.9543672-CDS-M-pyrifera_M_contig1201:27324..27762Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1201 27325..27762 -
1692277537.7342913-CDS-M-pyrifera_M_contig1201:27324..277621692277537.7342913-CDS-M-pyrifera_M_contig1201:27324..27762Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1201 27325..27762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1201.4152.1prot_M-pyrifera_M_contig1201.4152.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1201 27325..27762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1201.4152.1

>prot_M-pyrifera_M_contig1201.4152.1 ID=prot_M-pyrifera_M_contig1201.4152.1|Name=mRNA_M-pyrifera_M_contig1201.4152.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
WYLCDIEYDGVTYNCAGQMMMAQKAALFGVTTTERRIKAIRDLADQKALG
RTVSDFDDLVWERHRYNIVLKINFSKFRQYPKLRRQLAATGAKHITEASP
YDLIWGIDFKADHPDACEPTRWCDRNQLGRILMDVRESLGANRSAQ
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mRNA from alignment at M-pyrifera_M_contig1201:27325..27762-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1201.4152.1 ID=mRNA_M-pyrifera_M_contig1201.4152.1|Name=mRNA_M-pyrifera_M_contig1201.4152.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig1201:27325..27762- (Macrocystis pyrifera P11B4 male)
TGGTACCTGTGCGACATCGAGTACGATGGGGTCACATACAACTGCGCTGG GCAGATGATGATGGCGCAAAAGGCTGCGCTCTTCGGGGTCACCACAACTG AGCGCCGCATCAAAGCGATCCGCGACCTGGCCGACCAAAAAGCACTTGGG CGAACCGTTTCCGACTTCGACGATCTGGTTTGGGAGCGACACCGCTACAA CATCGTCCTCAAAATCAACTTCTCCAAGTTCCGCCAATACCCGAAGTTAC GGCGACAGCTAGCGGCAACGGGCGCCAAGCACATCACCGAGGCCAGCCCA TACGACCTCATCTGGGGCATAGACTTCAAAGCCGACCATCCGGACGCCTG CGAGCCGACGCGTTGGTGTGATCGGAACCAGCTGGGCCGGATACTGATGG ACGTTCGAGAAAGCCTCGGCGCCAATCGCTCCGCCCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1201:27325..27762-

>mRNA_M-pyrifera_M_contig1201.4152.1 ID=mRNA_M-pyrifera_M_contig1201.4152.1|Name=mRNA_M-pyrifera_M_contig1201.4152.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig1201:27325..27762- (Macrocystis pyrifera P11B4 male)
TGGTACCTGTGCGACATCGAGTACGATGGGGTCACATACAACTGCGCTGG
GCAGATGATGATGGCGCAAAAGGCTGCGCTCTTCGGGGTCACCACAACTG
AGCGCCGCATCAAAGCGATCCGCGACCTGGCCGACCAAAAAGCACTTGGG
CGAACCGTTTCCGACTTCGACGATCTGGTTTGGGAGCGACACCGCTACAA
CATCGTCCTCAAAATCAACTTCTCCAAGTTCCGCCAATACCCGAAGTTAC
GGCGACAGCTAGCGGCAACGGGCGCCAAGCACATCACCGAGGCCAGCCCA
TACGACCTCATCTGGGGCATAGACTTCAAAGCCGACCATCCGGACGCCTG
CGAGCCGACGCGTTGGTGTGATCGGAACCAGCTGGGCCGGATACTGATGG
ACGTTCGAGAAAGCCTCGGCGCCAATCGCTCCGCCCAATGGTACCTGTGC
GACATCGAGTACGATGGGGTCACATACAACTGCGCTGGGCAGATGATGAT
GGCGCAAAAGGCTGCGCTCTTCGGGGTCACCACAACTGAGCGCCGCATCA
AAGCGATCCGCGACCTGGCCGACCAAAAAGCACTTGGGCGAACCGTTTCC
GACTTCGACGATCTGGTTTGGGAGCGACACCGCTACAACATCGTCCTCAA
AATCAACTTCTCCAAGTTCCGCCAATACCCGAAGTTACGGCGACAGCTAG
CGGCAACGGGCGCCAAGCACATCACCGAGGCCAGCCCATACGACCTCATC
TGGGGCATAGACTTCAAAGCCGACCATCCGGACGCCTGCGAGCCGACGCG
TTGGTGTGATCGGAACCAGCTGGGCCGGATACTGATGGACGTTCGAGAAA
GCCTCGGCGCCAATCGCTCCGCCCAA
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