mRNA_M-pyrifera_M_contig120076.4148.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120076.4148.1
Unique NamemRNA_M-pyrifera_M_contig120076.4148.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120076.4148.1 vs. uniprot
Match: A0A6I6AD28_9PLAN (M56 family metallopeptidase n=2 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6AD28_9PLAN)

HSP 1 Score: 325 bits (832), Expect = 1.130e-107
Identity = 165/179 (92.18%), Postives = 174/179 (97.21%), Query Frame = 1
Query:    1 LWFHPLMWRTRVVHADACDELCDLKAAGYLGDDKLYGRLLAGLALRVAERNRSAALAMARRSQVRKRIEAVSRNRTSRGLNRWQAGSMLTTAVAMVVLLGVVRISRAQEQPSEAKDQPQTVQVKESEQAQGVKETLSGTGEPGATVKLYRYPEGYAKPVFQGETTIDDRGHFTFQDVQM 537
            LWFHPLMWRTRVVHADACDELCDLKAAGYLGDDKLYGRLLAGLALRVAERNRS+ALAMARRSQVRKRIEAVSRNR SRGLNRWQAGSMLTTAVAMVVLLGVVRISRAQEQP+EA+DQPQ VQV+ES+QAQGVKETLSGTGEPGATVKLYRYPE + KPVFQG+TTIDD GHFTF+DVQ+
Sbjct:  290 LWFHPLMWRTRVVHADACDELCDLKAAGYLGDDKLYGRLLAGLALRVAERNRSSALAMARRSQVRKRIEAVSRNRASRGLNRWQAGSMLTTAVAMVVLLGVVRISRAQEQPTEAEDQPQAVQVQESKQAQGVKETLSGTGEPGATVKLYRYPERHTKPVFQGKTTIDDNGHFTFKDVQL 468          
BLAST of mRNA_M-pyrifera_M_contig120076.4148.1 vs. uniprot
Match: A0A2E7KH47_9PLAN (Peptidase_M56 domain-containing protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KH47_9PLAN)

HSP 1 Score: 343 bits (879), Expect = 1.230e-107
Identity = 175/179 (97.77%), Postives = 178/179 (99.44%), Query Frame = 1
Query:    1 LWFHPLMWRTRVVHADACDELCDLKAAGYLGDDKLYGRLLAGLALRVAERNRSAALAMARRSQVRKRIEAVSRNRTSRGLNRWQAGSMLTTAVAMVVLLGVVRISRAQEQPSEAKDQPQTVQVKESEQAQGVKETLSGTGEPGATVKLYRYPEGYAKPVFQGETTIDDRGHFTFQDVQM 537
            LWFHPLMWRTRVVHADACDELCDLKAAGYLGDDKLYGRLLAGLALRVAERNRSAALAMARRSQVRKRIEAVSRNRTSRGLNRWQAGSMLTTAVAMVVLLGVVRISRAQEQP+EAKDQPQ VQVK+SEQAQGVKETLSGTGEPGATVKLYRYPEGYAKPVFQGETTIDDRGHFTFQDVQ+
Sbjct:  290 LWFHPLMWRTRVVHADACDELCDLKAAGYLGDDKLYGRLLAGLALRVAERNRSAALAMARRSQVRKRIEAVSRNRTSRGLNRWQAGSMLTTAVAMVVLLGVVRISRAQEQPAEAKDQPQAVQVKQSEQAQGVKETLSGTGEPGATVKLYRYPEGYAKPVFQGETTIDDRGHFTFQDVQL 468          
BLAST of mRNA_M-pyrifera_M_contig120076.4148.1 vs. uniprot
Match: A0A518AGT3_9BACT (Regulatory protein BlaR1 n=1 Tax=Aeoliella mucimassa TaxID=2527972 RepID=A0A518AGT3_9BACT)

HSP 1 Score: 123 bits (308), Expect = 3.030e-29
Identity = 66/121 (54.55%), Postives = 84/121 (69.42%), Query Frame = 1
Query:    1 LWFHPLMWRTRVVHADACDELCDLKAAGYLGDDKLYGRLLAGLALRVAERNRSAALAMARRSQVRKRIEAVSRNRTSRGLNRWQAGSMLTTAVAMVVLLGVVRISRAQEQPSEAKDQPQTV 363
            LWFHPL W+ R+ H DACDELCD  AA  LG+  LYGRLLA +A+R A R  ++ALAMARRSQVR RIEAV  N   R +  WQAG++  +A+ +V+LLG V I+RA+    E +   +TV
Sbjct:  271 LWFHPLAWKIRLAHTDACDELCDTIAARCLGNATLYGRLLAAVAVRAASRQAASALAMARRSQVRIRIEAVQHNLARRAIGFWQAGTISVSALLVVLLLGTVGITRAEPPVVEQESLDETV 391          
BLAST of mRNA_M-pyrifera_M_contig120076.4148.1 vs. uniprot
Match: A0A142YAV4_9PLAN (Thiol-disulfide oxidoreductase ResA n=1 Tax=Planctomyces sp. SH-PL62 TaxID=1636152 RepID=A0A142YAV4_9PLAN)

HSP 1 Score: 93.2 bits (230), Expect = 8.930e-19
Identity = 64/167 (38.32%), Postives = 86/167 (51.50%), Query Frame = 1
Query:    1 LWFHPLMWRTRVVHADACDELCDLKAAGYLGDDKLYGRLLAGLALRVAERNRSAALAMARRSQVRKRIEAVSRNRTSRGLNRWQAGSMLTTAVAMVVLLGVVRISRAQEQPSEAKDQPQTVQVKESEQAQGVKETLSGTGEP--GATVKLYRYPEGYAKPVFQGETT 495
            LWFHPL WR R  HA ACD +CD  A  +LGD   YGR LA LAL+ +    +  LAMAR   VR+R++++ R      L R      L  + A+ VL+G   + RAQ+ P +A  +P     K       V+   + TGEP  G  V+   + EG AK V +   T
Sbjct:  254 LWFHPLAWRMRSAHAQACDAVCDAVAVDHLGDLATYGRALARLALQASGAVPARGLAMARACDVRRRVDSLQRMVYRSPLPRRFVMPALVLSAALAVLIGGTAVIRAQDDPDKAAARPADPGAKPLT----VRALDAATGEPMEGVEVEFRYHVEGAAKSVVEKPVT 416          
BLAST of mRNA_M-pyrifera_M_contig120076.4148.1 vs. uniprot
Match: A0A5B9Q3N0_9BACT (Regulatory protein BlaR1 n=1 Tax=Bythopirellula goksoeyrii TaxID=1400387 RepID=A0A5B9Q3N0_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 7.610e-18
Identity = 64/167 (38.32%), Postives = 88/167 (52.69%), Query Frame = 1
Query:    1 LWFHPLMWRTRVVHADACDELCDLKAAGYLGDDKLYGRLLAGLALRVAERNRSAALAMARRSQVRKRIEAVSRNRTSRGLNRWQAGSMLTTAVAMVVLLGVVRISRAQEQPSEAKDQPQTVQVKESEQAQGVKETLSGTGEP---GATVKL----YRYPEGYAKPVF 480
            LWFHPL+WR R+ HADACDE CD  AA  L D   YG  LA +ALR AE      L MAR+S + +RI A+ +      + RWQ   + +TA   V+ L  V I+R+Q   ++A  +      +++E A+  K      G+P   GA  +L    YR+P  Y    F
Sbjct:  282 LWFHPLVWRIRLAHADACDERCDSYAARSLPDPCQYGPTLARMALRAAEPTAPLVLTMARQSSISRRIAALEKGIGRLPVPRWQTSLVFSTAFFFVLCLAQVGINRSQAVATQAATEEAP---EKNELAKIPKAGFDIYGDPLPQGAIARLGTLRYRHPGWYKHCAF 445          
BLAST of mRNA_M-pyrifera_M_contig120076.4148.1 vs. uniprot
Match: UPI0013EDEA59 (redoxin domain-containing protein n=1 Tax=Aquisphaera sp. JC669 TaxID=2712864 RepID=UPI0013EDEA59)

HSP 1 Score: 82.8 bits (203), Expect = 3.620e-15
Identity = 51/108 (47.22%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    1 LWFHPLMWRTRVVHADACDELCDLKAAGYLGDDKLYGRLLAGLALRVAERNRSAALAMARRSQVRKRIEAVSRNRTSRGLNRWQAGSMLTTAVAMVVLLGVVRISRAQ 324
            LWFHPL WR R  HA ACD + D  AA  LGD   YGR LA +A+RV+  + +  LAMAR SQVR+RIEA+ R      L R    S LT  V +V ++G   +++A+
Sbjct:  270 LWFHPLAWRIRGAHALACDGVSDAVAADLLGDVAGYGRTLARMAVRVSGISPAHGLAMARPSQVRRRIEALGRMLYRSPLPRAAVLSALTVFVPIVAIVGGFAVAQAE 377          
BLAST of mRNA_M-pyrifera_M_contig120076.4148.1 vs. uniprot
Match: A0A5C6DVD0_9BACT (BlaR1 peptidase M56 n=1 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6DVD0_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 4.310e-12
Identity = 48/113 (42.48%), Postives = 59/113 (52.21%), Query Frame = 1
Query:    1 LWFHPLMWRTRVVHADACDELCDLKAAGYLGDDKLYGRLLAGLALRVAERNRSAALAMARRSQVRKRIEAVSRNRTSRGLNRWQAGSMLTTAVAMVVLLGVVRISRAQEQPSE 339
            LW HPL WR    H  AC++  D ++A  LGD  LY R LA +AL VA   R   LAMAR S VR+R++ V R      L R      L  A    +LLG +R   A + PSE
Sbjct:  276 LWPHPLCWRIGSAHLTACEDAADAESARRLGDTDLYSRTLAKVALSVARHPRPVGLAMARISDVRRRLDRVKRTFRQLPLRRRTIALKLGGASCAFLLLGAIRFVHA-DPPSE 387          
BLAST of mRNA_M-pyrifera_M_contig120076.4148.1 vs. uniprot
Match: A0A5C6EIR9_9BACT (Thiol-disulfide oxidoreductase ResA n=1 Tax=Rubripirellula tenax TaxID=2528015 RepID=A0A5C6EIR9_9BACT)

HSP 1 Score: 70.5 bits (171), Expect = 6.750e-11
Identity = 54/174 (31.03%), Postives = 79/174 (45.40%), Query Frame = 1
Query:    1 LWFHPLMWRTRVVHADACDELCDLKAAGYLGDDKLYGRLLAGLALRVAERNRSAALAMARRSQVRKRIEAVSRNRTSRGLNRWQAGSMLTTAVAMVVLLGVVRISRAQEQPSEAKDQPQTVQVKESEQAQGVKETLSGTGEPGATVKLYRYPEGYAKPVFQGETTIDDRGHFTF 522
            LW HPL WR    H  AC++  D ++   LG+ ++Y R LA +AL V    R   LAMAR S VR+R++ V +      L R Q  + + +A  + ++LG  R   AQ  P +AK     V++   + A+       G  E G  +    +   Y       E T D     TF
Sbjct:  178 LWPHPLAWRIGSAHLQACEDAADAESTCRLGETEIYSRTLAKVALSVTAGKRPVGLAMARVSDVRRRLDRVKQTFQLLPLTRRQITATIVSASFVFLMLGTFRFVYAQP-PVDAKPNDDAVEIAVDDDAERSLTVRIGD-EQGKPISGVEFNAWYNSKKISPEPTDDGVYKITF 349          
BLAST of mRNA_M-pyrifera_M_contig120076.4148.1 vs. uniprot
Match: A0A517ZN01_9PLAN (Thiol-disulfide oxidoreductase ResA n=1 Tax=Symmachiella dynata TaxID=2527995 RepID=A0A517ZN01_9PLAN)

HSP 1 Score: 61.6 bits (148), Expect = 7.590e-8
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 1
Query:    1 LWFHPLMWRTRVVHADACDELCDLKAAGYLGDDKLYGRLLAGLALR-VAERNRSAALAMARRSQVRKRIEAVSRNRTSRGL-NRWQAGSMLTTAVAMVVLLGVVRISRAQEQPSEA 342
            LWFHPL WR    H+ AC+E+ D  AA  +GD   Y   LA +AL  V+    +AA++MAR SQ+  R+  + R  ++  L  RW   S L   + +VV L  ++++ A  + + A
Sbjct:  270 LWFHPLTWRATSAHSMACEEVADAVAADSVGDVARYSGTLARVALAAVSHPPATAAISMARSSQIMSRLARLKRGLSNSPLARRWVILSALA-GLLVVVPLATIKLAYADNESTTA 384          
BLAST of mRNA_M-pyrifera_M_contig120076.4148.1 vs. uniprot
Match: UPI001187CA2B (redoxin domain-containing protein n=1 Tax=Symmachiella dynata TaxID=2527995 RepID=UPI001187CA2B)

HSP 1 Score: 60.8 bits (146), Expect = 1.400e-7
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:    1 LWFHPLMWRTRVVHADACDELCDLKAAGYLGDDKLYGRLLAGLALR-VAERNRSAALAMARRSQVRKRIEAVSRNRTSRGL-NRWQAGSMLTTAVAMVVL 294
            LWFHPL WR    H+ AC+E+ D  AA  +GD   Y   LA +AL  V+    +AA++MAR SQ+  R+  + R  ++  L  RW   S L   +A++ L
Sbjct:  270 LWFHPLTWRATSAHSMACEEVADAVAADNVGDVARYSGTLARVALAAVSHPPATAAISMARSSQIMSRLSRLKRGLSNSPLARRWVILSALAGLLAVLPL 369          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120076.4148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6I6AD28_9PLAN1.130e-10792.18M56 family metallopeptidase n=2 Tax=Gimesia benthi... [more]
A0A2E7KH47_9PLAN1.230e-10797.77Peptidase_M56 domain-containing protein n=6 Tax=Gi... [more]
A0A518AGT3_9BACT3.030e-2954.55Regulatory protein BlaR1 n=1 Tax=Aeoliella mucimas... [more]
A0A142YAV4_9PLAN8.930e-1938.32Thiol-disulfide oxidoreductase ResA n=1 Tax=Planct... [more]
A0A5B9Q3N0_9BACT7.610e-1838.32Regulatory protein BlaR1 n=1 Tax=Bythopirellula go... [more]
UPI0013EDEA593.620e-1547.22redoxin domain-containing protein n=1 Tax=Aquispha... [more]
A0A5C6DVD0_9BACT4.310e-1242.48BlaR1 peptidase M56 n=1 Tax=Novipirellula artifici... [more]
A0A5C6EIR9_9BACT6.750e-1131.03Thiol-disulfide oxidoreductase ResA n=1 Tax=Rubrip... [more]
A0A517ZN01_9PLAN7.590e-836.21Thiol-disulfide oxidoreductase ResA n=1 Tax=Symmac... [more]
UPI001187CA2B1.400e-739.00redoxin domain-containing protein n=1 Tax=Symmachi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120076contigM-pyrifera_M_contig120076:3..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size537
Cds size519
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.766067-CDS-M-pyrifera_M_contig120076:2..5211622815720.766067-CDS-M-pyrifera_M_contig120076:2..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120076 3..521 -
1692277537.6668541-CDS-M-pyrifera_M_contig120076:2..5211692277537.6668541-CDS-M-pyrifera_M_contig120076:2..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120076 3..521 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.7798154-UTR-M-pyrifera_M_contig120076:521..5391622815720.7798154-UTR-M-pyrifera_M_contig120076:521..539Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120076 522..539 -
1692277537.6772885-UTR-M-pyrifera_M_contig120076:521..5391692277537.6772885-UTR-M-pyrifera_M_contig120076:521..539Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120076 522..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120076.4148.1prot_M-pyrifera_M_contig120076.4148.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120076 3..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120076.4148.1

>prot_M-pyrifera_M_contig120076.4148.1 ID=prot_M-pyrifera_M_contig120076.4148.1|Name=mRNA_M-pyrifera_M_contig120076.4148.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=173bp
MWRTRVVHADACDELCDLKAAGYLGDDKLYGRLLAGLALRVAERNRSAAL
AMARRSQVRKRIEAVSRNRTSRGLNRWQAGSMLTTAVAMVVLLGVVRISR
AQEQPSEAKDQPQTVQVKESEQAQGVKETLSGTGEPGATVKLYRYPEGYA
KPVFQGETTIDDRGHFTFQDVQM
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mRNA from alignment at M-pyrifera_M_contig120076:3..539-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120076.4148.1 ID=mRNA_M-pyrifera_M_contig120076.4148.1|Name=mRNA_M-pyrifera_M_contig120076.4148.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=537bp|location=Sequence derived from alignment at M-pyrifera_M_contig120076:3..539- (Macrocystis pyrifera P11B4 male)
CTCTGGTTCCATCCGCTGATGTGGAGAACCCGCGTCGTGCATGCGGACGC CTGCGATGAACTCTGCGATTTAAAAGCCGCCGGCTATCTGGGGGATGACA AATTGTATGGGCGTCTGCTGGCGGGGCTGGCGTTACGCGTGGCAGAGCGA AACAGGAGTGCCGCCCTGGCGATGGCCCGCCGATCGCAGGTGCGCAAACG AATTGAAGCCGTGAGTCGCAACCGGACCAGCAGGGGATTGAACCGCTGGC AGGCGGGCAGCATGCTGACGACGGCGGTCGCGATGGTGGTTCTCCTGGGA GTGGTGCGCATCAGTCGCGCCCAGGAACAGCCGTCAGAGGCTAAAGACCA GCCACAGACAGTGCAGGTCAAGGAGAGTGAGCAGGCTCAGGGCGTCAAAG AGACGCTCTCCGGAACCGGCGAACCGGGGGCGACGGTGAAGCTTTATCGT TATCCCGAAGGGTATGCCAAGCCTGTCTTTCAGGGAGAGACAACAATTGA CGACCGTGGTCACTTTACATTTCAAGATGTGCAGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120076:3..539-

>mRNA_M-pyrifera_M_contig120076.4148.1 ID=mRNA_M-pyrifera_M_contig120076.4148.1|Name=mRNA_M-pyrifera_M_contig120076.4148.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1038bp|location=Sequence derived from alignment at M-pyrifera_M_contig120076:3..539- (Macrocystis pyrifera P11B4 male)
ATGTGGAGAACCCGCGTCGTGCATGCGGACGCCTGCGATGAACTCTGCGA
TTTAAAAGCCGCCGGCTATCTGGGGGATGACAAATTGTATGGGCGTCTGC
TGGCGGGGCTGGCGTTACGCGTGGCAGAGCGAAACAGGAGTGCCGCCCTG
GCGATGGCCCGCCGATCGCAGGTGCGCAAACGAATTGAAGCCGTGAGTCG
CAACCGGACCAGCAGGGGATTGAACCGCTGGCAGGCGGGCAGCATGCTGA
CGACGGCGGTCGCGATGGTGGTTCTCCTGGGAGTGGTGCGCATCAGTCGC
GCCCAGGAACAGCCGTCAGAGGCTAAAGACCAGCCACAGACAGTGCAGGT
CAAGGAGAGTGAGCAGGCTCAGGGCGTCAAAGAGACGCTCTCCGGAACCG
GCGAACCGGGGGCGACGGTGAAGCTTTATCGTTATCCCGAAGGGTATGCC
AAGCCTGTCTTTCAGGGAGAGACAACAATTGACGACCGTGGTCACTTTAC
ATTTCAAGATGTGCAGATGATGTGGAGAACCCGCGTCGTGCATGCGGACG
CCTGCGATGAACTCTGCGATTTAAAAGCCGCCGGCTATCTGGGGGATGAC
AAATTGTATGGGCGTCTGCTGGCGGGGCTGGCGTTACGCGTGGCAGAGCG
AAACAGGAGTGCCGCCCTGGCGATGGCCCGCCGATCGCAGGTGCGCAAAC
GAATTGAAGCCGTGAGTCGCAACCGGACCAGCAGGGGATTGAACCGCTGG
CAGGCGGGCAGCATGCTGACGACGGCGGTCGCGATGGTGGTTCTCCTGGG
AGTGGTGCGCATCAGTCGCGCCCAGGAACAGCCGTCAGAGGCTAAAGACC
AGCCACAGACAGTGCAGGTCAAGGAGAGTGAGCAGGCTCAGGGCGTCAAA
GAGACGCTCTCCGGAACCGGCGAACCGGGGGCGACGGTGAAGCTTTATCG
TTATCCCGAAGGGTATGCCAAGCCTGTCTTTCAGGGAGAGACAACAATTG
ACGACCGTGGTCACTTTACATTTCAAGATGTGCAGATG
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