mRNA_M-pyrifera_M_contig12007.4144.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12007.4144.1
Unique NamemRNA_M-pyrifera_M_contig12007.4144.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12007.4144.1 vs. uniprot
Match: A0A835Z8B9_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B9_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.270e-40
Identity = 71/117 (60.68%), Postives = 93/117 (79.49%), Query Frame = 1 
Query:    1 LLSQDPKPNSVLGSTLGAVIESYYRSGLNSWLNAKLTGKPPASMFPLFHVQIPTRVIYINGFKARENGGGGEPGRGGTIRSALSDNVNPADFSNPTAVRLGSALVPGIMMTPVSSVL 351
            LL QDP PN+   ++LGA IESYYRSGLN+WLNAKL+G+PPAS+FP FH+QIPTRV+YINGFK               +RS L+++V+PA++++P AVRLG+A++PGI+MTPVSSVL
Sbjct:  199 LLEQDPHPNNFFATSLGASIESYYRSGLNAWLNAKLSGRPPASLFPNFHIQIPTRVLYINGFKV--------------VRSFLAEHVHPAEYASPNAVRLGAAMIPGIVMTPVSSVL 301
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BLAST of mRNA_M-pyrifera_M_contig12007.4144.1 vs. uniprot
Match: D7FS61_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS61_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.080e-33
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 LLSQDPKPNSVLGSTLGAVIESYYRSGLNSWLNAKLTGKPPASMFPLFHVQIPTRVIYINGFKAR 195
            LL QDPKPNS  GSTLGAVIESYYRSG NSWLNAKLTGKPPASMFP+FHVQIPTRV+YINGFKAR
Sbjct:  212 LLEQDPKPNSFFGSTLGAVIESYYRSGFNSWLNAKLTGKPPASMFPMFHVQIPTRVLYINGFKAR 276
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BLAST of mRNA_M-pyrifera_M_contig12007.4144.1 vs. uniprot
Match: A0A7S3XLB7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLB7_HETAK)

HSP 1 Score: 125 bits (315), Expect = 4.900e-32
Identity = 65/117 (55.56%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:    1 LLSQDPKPNSVLGSTLGAVIESYYRSGLNSWLNAKLTGKPPASMFPLFHVQIPTRVIYINGFKARENGGGGEPGRGGTIRSALSDNVNPADFSNPTAVRLGSALVPGIMMTPVSSVL 351
            LL  DPKP     +++GA IESYYRSGLN+ LNA+LTG P  + FP FH+QIPTRVIYINGFK               +RS L++ V+P +++ P AVR+G ALVPGI MTPVSS+L
Sbjct:  175 LLEMDPKPAPFFATSIGATIESYYRSGLNAMLNAQLTGGPVTNWFPNFHIQIPTRVIYINGFKI--------------LRSQLNEAVDPHEYARPDAVRMGLALVPGICMTPVSSLL 277
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BLAST of mRNA_M-pyrifera_M_contig12007.4144.1 vs. uniprot
Match: A0A1V9YZR3_9STRA (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YZR3_9STRA)

HSP 1 Score: 115 bits (287), Expect = 4.740e-28
Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:    1 LLSQDPKPNSVLGSTLGAVIESYYRSGLNSWLNAKLTGKPPASMFPLFHVQIPTRVIYINGFKARENGGGGEPGRGGTIRSALSDNVNPADFSNPTAVRLGSALVPGIMMTPVSSVL 351
            LL Q  KP  +  +++ A +ES+YRS LNS+LNAKLTG+ PA++FP   VQIPTRV YINGFK               +R    +N++  D+ NP AVRL  A++PGI+MTPVSS+L
Sbjct:  150 LLEQHAKPTPIFATSVAAALESFYRSALNSYLNAKLTGQAPATLFPNMGVQIPTRVAYINGFKG--------------LRHFFENNIDADDYENPEAVRLAEAILPGIIMTPVSSIL 252
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BLAST of mRNA_M-pyrifera_M_contig12007.4144.1 vs. uniprot
Match: A0A7S2UX59_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX59_9STRA)

HSP 1 Score: 112 bits (279), Expect = 6.570e-28
Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:   70 YRSGLNSWLNAKLTGKPPASMFPLFHVQIPTRVIYINGFKARENGGGGEPGRGGTIRSALSDNVNPADFSNPTAVRLGSALVPGIMMTPVSSVL 351
            YRSGLN++LNA+L+G P +S+FP FH+QIPTR+ YINGFK               +RS ++DN+NP DFSNP AVR G+A+ PGI MTPVSS+L
Sbjct:    5 YRSGLNAFLNARLSGGPVSSLFPNFHIQIPTRIFYINGFK--------------WLRSVINDNINPLDFSNPDAVRFGAAIAPGIAMTPVSSLL 84
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BLAST of mRNA_M-pyrifera_M_contig12007.4144.1 vs. uniprot
Match: A0A067D9X2_SAPPC (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D9X2_SAPPC)

HSP 1 Score: 114 bits (284), Expect = 1.280e-27
Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:    1 LLSQDPKPNSVLGSTLGAVIESYYRSGLNSWLNAKLTGKPPASMFPLFHVQIPTRVIYINGFKARENGGGGEPGRGGTIRSALSDNVNPADFSNPTAVRLGSALVPGIMMTPVSSVL 351
            LL Q  KP  +  +++ A +ES+YRS LNS+LNAKLTG+ PA++FP   VQIPTRV YINGFK               +R    +N++  D+ NP AVRL  A++PGI+MTPVSS+L
Sbjct:  150 LLEQHAKPTPIFATSVAAAVESFYRSALNSYLNAKLTGQAPATLFPNMGVQIPTRVAYINGFKG--------------LRHFFENNIDADDYENPEAVRLVEAILPGILMTPVSSML 252
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BLAST of mRNA_M-pyrifera_M_contig12007.4144.1 vs. uniprot
Match: A0A485KMG1_9STRA (Aste57867_9213 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KMG1_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.590e-26
Identity = 56/117 (47.86%), Postives = 75/117 (64.10%), Query Frame = 1 
Query:    1 LLSQDPKPNSVLGSTLGAVIESYYRSGLNSWLNAKLTGKPPASMFPLFHVQIPTRVIYINGFKARENGGGGEPGRGGTIRSALSDNVNPADFSNPTAVRLGSALVPGIMMTPVSSVL 351
            LL Q  KP  +  +++ A +ES+YRS LNS+LNAKLTG+ PA++FP   VQIPTRV YINGFK               +R  L +N++   + NP  VR+  A+ PGI+MTPVSS+L
Sbjct:  150 LLEQHAKPTPIFATSVAAALESFYRSALNSYLNAKLTGQAPATLFPNMGVQIPTRVAYINGFKG--------------LRHFLENNIDDESYENPGYVRIAKAIAPGIIMTPVSSML 252
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BLAST of mRNA_M-pyrifera_M_contig12007.4144.1 vs. uniprot
Match: A0A6G0X190_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X190_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.340e-25
Identity = 55/117 (47.01%), Postives = 75/117 (64.10%), Query Frame = 1 
Query:    1 LLSQDPKPNSVLGSTLGAVIESYYRSGLNSWLNAKLTGKPPASMFPLFHVQIPTRVIYINGFKARENGGGGEPGRGGTIRSALSDNVNPADFSNPTAVRLGSALVPGIMMTPVSSVL 351
            LL Q  KP  +  +++ A +ES+YRS LNS+LNA+LTG+ P+++FP   VQIPTRV YINGFK               +R  L +N +  D+ NP  VR+  A+ PGI+MTPVSS+L
Sbjct:  150 LLEQHAKPTPIFATSVAASVESFYRSALNSYLNARLTGQAPSTLFPNMGVQIPTRVAYINGFKG--------------LRHFLENNFDDEDYENPGNVRIAKAVAPGIIMTPVSSIL 252
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BLAST of mRNA_M-pyrifera_M_contig12007.4144.1 vs. uniprot
Match: W4H4L7_9STRA (Cyclic nucleotide-binding domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H4L7_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.860e-25
Identity = 55/117 (47.01%), Postives = 74/117 (63.25%), Query Frame = 1 
Query:    1 LLSQDPKPNSVLGSTLGAVIESYYRSGLNSWLNAKLTGKPPASMFPLFHVQIPTRVIYINGFKARENGGGGEPGRGGTIRSALSDNVNPADFSNPTAVRLGSALVPGIMMTPVSSVL 351
            LL Q  KP  +  +++ A +ES+YRS LNS+LNA+LTG+ PA++FP   VQIPTRV YINGFK               +R  L  N++   + NP  VR+  A+ PGI+MTPVSS+L
Sbjct:  150 LLEQHAKPTPIFATSVAAAVESFYRSALNSYLNARLTGQAPATLFPNMGVQIPTRVAYINGFKG--------------LRHYLEKNIDDDSYENPGYVRIAKAIAPGIIMTPVSSML 252
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BLAST of mRNA_M-pyrifera_M_contig12007.4144.1 vs. uniprot
Match: K3XC50_GLOUD (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XC50_GLOUD)

HSP 1 Score: 107 bits (268), Expect = 2.300e-25
Identity = 55/117 (47.01%), Postives = 71/117 (60.68%), Query Frame = 1 
Query:    1 LLSQDPKPNSVLGSTLGAVIESYYRSGLNSWLNAKLTGKPPASMFPLFHVQIPTRVIYINGFKARENGGGGEPGRGGTIRSALSDNVNPADFSNPTAVRLGSALVPGIMMTPVSSVL 351
            L  Q  KP      +  A +ES+YRS +NS LNA+LTG+P AS+FP  H+QIPTRV+YINGFK               IR     +++P  + NP  VRLG A+ PGI+MTPVS +L
Sbjct:  144 LFEQHAKPTPYFAISAAATLESFYRSAMNSLLNARLTGQPVASLFPNMHMQIPTRVVYINGFKG--------------IRHLTEKHIDPDSYENPQLVRLGEAVTPGIVMTPVSGML 246
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12007.4144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8B9_9STRA1.270e-4060.68Cyclic nucleotide-binding domain-containing protei... [more]
D7FS61_ECTSI1.080e-3390.77Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S3XLB7_HETAK4.900e-3255.56Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1V9YZR3_9STRA4.740e-2849.57Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S2UX59_9STRA6.570e-2857.45Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A067D9X2_SAPPC1.280e-2749.57Cyclic nucleotide-binding domain-containing protei... [more]
A0A485KMG1_9STRA3.590e-2647.86Aste57867_9213 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0X190_9STRA1.340e-2547.01Cyclic nucleotide-binding domain-containing protei... [more]
W4H4L7_9STRA1.860e-2547.01Cyclic nucleotide-binding domain-containing protei... [more]
K3XC50_GLOUD2.300e-2547.01Cyclic nucleotide-binding domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12007contigM-pyrifera_M_contig12007:321..1172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue5.4e-27
Seed eggNOG ortholog2880.D7FS61
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cyclic nucleotide-monophosphate binding domain
EggNOG OGs28KCE@1,2QSTD@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.5576022-CDS-M-pyrifera_M_contig12007:320..5511622815720.5576022-CDS-M-pyrifera_M_contig12007:320..551Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12007 321..551 +
1692277537.5675094-CDS-M-pyrifera_M_contig12007:320..5511692277537.5675094-CDS-M-pyrifera_M_contig12007:320..551Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12007 321..551 +
1622815720.5764737-CDS-M-pyrifera_M_contig12007:1052..11721622815720.5764737-CDS-M-pyrifera_M_contig12007:1052..1172Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12007 1053..1172 +
1692277537.5789795-CDS-M-pyrifera_M_contig12007:1052..11721692277537.5789795-CDS-M-pyrifera_M_contig12007:1052..1172Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12007 1053..1172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12007.4144.1prot_M-pyrifera_M_contig12007.4144.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12007 321..1172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12007.4144.1

>prot_M-pyrifera_M_contig12007.4144.1 ID=prot_M-pyrifera_M_contig12007.4144.1|Name=mRNA_M-pyrifera_M_contig12007.4144.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
LLSQDPKPNSVLGSTLGAVIESYYRSGLNSWLNAKLTGKPPASMFPLFHV
QIPTRVIYINGFKARENGGGGEPGRGGTIRSALSDNVNPADFSNPTAVRL
GSALVPGIMMTPVSSVL
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mRNA from alignment at M-pyrifera_M_contig12007:321..1172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12007.4144.1 ID=mRNA_M-pyrifera_M_contig12007.4144.1|Name=mRNA_M-pyrifera_M_contig12007.4144.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig12007:321..1172+ (Macrocystis pyrifera P11B4 male)
TTGCTCTCTCAGGACCCCAAGCCCAACTCTGTCCTGGGGTCCACTCTTGG
CGCCGTCATCGAGAGCTACTACCGCTCGGGACTGAATTCTTGGCTCAACG
CGAAGCTCACTGGGAAACCCCCCGCGTCTATGTTCCCCTTGTTCCACGTA
CAAATCCCGACCAGAGTGATCTATATCAACGGTTTCAAGGCGAGAGAAAA
TGGAGGCGGTGGGGAACCGGGGAGGGGGGGGGTATTCTAGAGTGCGGAAG
GGTTTTTTTCAGGCTTTTTTTCAGGGGGGACAGTATATATGTTTGTTGGT
GACAGCCTACAATTGTTTGTGGGGGATGGTGTATGTTTTGTTCAGGGAAA
CAAAATTTATTCTTCATTTTTTGTGTTTGATTGTTGTTCAGCAGGCCGCG
CTATATTGTAGGGTGACCACACTAACTGCGTGTATGATACACTTCACAGT
GGATTACACCAGTATCGGTGTTAATTTGCAGCCAAATGGTTGGTATTCCG
GTTCCTTGTTACCGTTGGCTTGGCCGTCCTGGACTTTTTTTTTCTGTTGT
GTTTCTCTGTTGTTTTGTTCTACCAGGGTATGTGTTGAGTTCTGTTTTGC
TCTGTTTTATTCTGTCTCCTTTTCTGCTTTTTTTTGTTGTCTTGTTATTT
TCTTCTGTTGGCTGTTTCGCGCTTATTTTCTTCTCATGATGTTTCCTTCT
GCTTCTCTGTTCTGTTTTACCCCCGCCTCCAGACTATCCGATCGGCGCTT
AGCGACAATGTTAACCCTGCGGACTTCTCGAACCCTACGGCGGTGCGCCT
GGGCTCCGCGCTCGTACCCGGAATCATGATGACTCCCGTCAGCAGCGTCT
TG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12007:321..1172+

>mRNA_M-pyrifera_M_contig12007.4144.1 ID=mRNA_M-pyrifera_M_contig12007.4144.1|Name=mRNA_M-pyrifera_M_contig12007.4144.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig12007:321..1172+ (Macrocystis pyrifera P11B4 male)
TTGCTCTCTCAGGACCCCAAGCCCAACTCTGTCCTGGGGTCCACTCTTGG
CGCCGTCATCGAGAGCTACTACCGCTCGGGACTGAATTCTTGGCTCAACG
CGAAGCTCACTGGGAAACCCCCCGCGTCTATGTTCCCCTTGTTCCACGTA
CAAATCCCGACCAGAGTGATCTATATCAACGGTTTCAAGGCGAGAGAAAA
TGGAGGCGGTGGGGAACCGGGGAGGGGGGGGTTGCTCTCTCAGGACCCCA
AGCCCAACTCTGTCCTGGGGTCCACTCTTGGCGCCGTCATCGAGAGCTAC
TACCGCTCGGGACTGAATTCTTGGCTCAACGCGAAGCTCACTGGGAAACC
CCCCGCGTCTATGTTCCCCTTGTTCCACGTACAAATCCCGACCAGAGTGA
TCTATATCAACGGTTTCAAGGCGAGAGAAAATGGAGGCGGTGGGGAACCG
GGGAGGGGGGGGACTATCCGATCGGCGCTTAGCGACAATGTTAACCCTGC
GGACTTCTCGAACCCTACGGCGGTGCGCCTGGGCTCCGCGCTCGTACCCG
GAATCATGATGACTCCCGTCAGCAGCGTCTTGACTATCCGATCGGCGCTT
AGCGACAATGTTAACCCTGCGGACTTCTCGAACCCTACGGCGGTGCGCCT
GGGCTCCGCGCTCGTACCCGGAATCATGATGACTCCCGTCAGCAGCGTCT
TG
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