mRNA_M-pyrifera_M_contig120013.4129.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120013.4129.1
Unique NamemRNA_M-pyrifera_M_contig120013.4129.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120013.4129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120013contigM-pyrifera_M_contig120013:2..424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size423
Cds size405
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.8722947-CDS-M-pyrifera_M_contig120013:1..4061622815719.8722947-CDS-M-pyrifera_M_contig120013:1..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120013 2..406 -
1692277537.3297954-CDS-M-pyrifera_M_contig120013:1..4061692277537.3297954-CDS-M-pyrifera_M_contig120013:1..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120013 2..406 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.9140124-UTR-M-pyrifera_M_contig120013:406..4241622815719.9140124-UTR-M-pyrifera_M_contig120013:406..424Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120013 407..424 -
1692277537.3443475-UTR-M-pyrifera_M_contig120013:406..4241692277537.3443475-UTR-M-pyrifera_M_contig120013:406..424Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120013 407..424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120013.4129.1prot_M-pyrifera_M_contig120013.4129.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120013 2..406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120013.4129.1

>prot_M-pyrifera_M_contig120013.4129.1 ID=prot_M-pyrifera_M_contig120013.4129.1|Name=mRNA_M-pyrifera_M_contig120013.4129.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
MRLGDELRRLAEWLAVNVSFLRALTPANVLRLCRVVTFRSYPQNKVLIRQ
GDPADEFFMVLRGKVHAHKRDARSVLAAADARLAHSDAERRRLLLTRSGD
TAAIASGGPSVVDGITVGPRVLTFSAGDSFGHAAI
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mRNA from alignment at M-pyrifera_M_contig120013:2..424-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120013.4129.1 ID=mRNA_M-pyrifera_M_contig120013.4129.1|Name=mRNA_M-pyrifera_M_contig120013.4129.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig120013:2..424- (Macrocystis pyrifera P11B4 male)
TTGCGAAAACCACCACATATGCGTCTTGGTGATGAGTTGAGAAGGTTGGC
GGAGTGGTTGGCGGTGAACGTCAGTTTCTTGCGTGCTCTGACTCCAGCAA
ATGTTTTGCGTCTTTGTCGAGTTGTGACATTCCGTTCCTATCCACAAAAC
AAAGTGTTGATTCGGCAGGGTGATCCTGCAGATGAGTTCTTCATGGTACT
ACGAGGTAAAGTTCATGCACACAAGCGAGATGCAAGGAGTGTGCTTGCGG
CTGCTGATGCACGCCTTGCACATTCTGATGCAGAACGTCGGCGTCTTCTT
CTCACACGTTCTGGTGATACTGCTGCAATTGCAAGTGGTGGTCCATCTGT
GGTGGATGGAATCACTGTTGGTCCAAGAGTGTTGACATTTAGTGCTGGAG
ACAGTTTCGGGCATGCTGCAATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120013:2..424-

>mRNA_M-pyrifera_M_contig120013.4129.1 ID=mRNA_M-pyrifera_M_contig120013.4129.1|Name=mRNA_M-pyrifera_M_contig120013.4129.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig120013:2..424- (Macrocystis pyrifera P11B4 male)
ATGCGTCTTGGTGATGAGTTGAGAAGGTTGGCGGAGTGGTTGGCGGTGAA
CGTCAGTTTCTTGCGTGCTCTGACTCCAGCAAATGTTTTGCGTCTTTGTC
GAGTTGTGACATTCCGTTCCTATCCACAAAACAAAGTGTTGATTCGGCAG
GGTGATCCTGCAGATGAGTTCTTCATGGTACTACGAGGTAAAGTTCATGC
ACACAAGCGAGATGCAAGGAGTGTGCTTGCGGCTGCTGATGCACGCCTTG
CACATTCTGATGCAGAACGTCGGCGTCTTCTTCTCACACGTTCTGGTGAT
ACTGCTGCAATTGCAAGTGGTGGTCCATCTGTGGTGGATGGAATCACTGT
TGGTCCAAGAGTGTTGACATTTAGTGCTGGAGACAGTTTCGGGCATGCTG
CAATTATGCGTCTTGGTGATGAGTTGAGAAGGTTGGCGGAGTGGTTGGCG
GTGAACGTCAGTTTCTTGCGTGCTCTGACTCCAGCAAATGTTTTGCGTCT
TTGTCGAGTTGTGACATTCCGTTCCTATCCACAAAACAAAGTGTTGATTC
GGCAGGGTGATCCTGCAGATGAGTTCTTCATGGTACTACGAGGTAAAGTT
CATGCACACAAGCGAGATGCAAGGAGTGTGCTTGCGGCTGCTGATGCACG
CCTTGCACATTCTGATGCAGAACGTCGGCGTCTTCTTCTCACACGTTCTG
GTGATACTGCTGCAATTGCAAGTGGTGGTCCATCTGTGGTGGATGGAATC
ACTGTTGGTCCAAGAGTGTTGACATTTAGTGCTGGAGACAGTTTCGGGCA
TGCTGCAATT
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