mRNA_M-pyrifera_M_contig119982.4123.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119982.4123.1
Unique NamemRNA_M-pyrifera_M_contig119982.4123.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119982.4123.1 vs. uniprot
Match: A0A1Y2F0B9_PROLT (TPR_MLP1_2 domain-containing protein n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2F0B9_PROLT)

HSP 1 Score: 54.3 bits (129), Expect = 1.730e-5
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:    1 LEDDNENWRNRVQSLLNKYERIDPEEYRLLQENAATTSRALEETKAEVQRLTTEWSESV 177
            LE DN+ W+ R QS+L KYERIDP+E R LQ  AA+  +A++    E     TEW E +
Sbjct: 1293 LEADNDRWKQRTQSILEKYERIDPDELRKLQSQAASAEQAIQTLATEAAAKETEWMEKI 1351
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119982.4123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1Y2F0B9_PROLT1.730e-547.46TPR_MLP1_2 domain-containing protein n=1 Tax=Proto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119982contigM-pyrifera_M_contig119982:28..516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.6208172-CDS-M-pyrifera_M_contig119982:27..5161622815719.6208172-CDS-M-pyrifera_M_contig119982:27..516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119982 28..516 -
1692277537.2468088-CDS-M-pyrifera_M_contig119982:27..5161692277537.2468088-CDS-M-pyrifera_M_contig119982:27..516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119982 28..516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119982.4123.1prot_M-pyrifera_M_contig119982.4123.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119982 28..516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119982.4123.1

>prot_M-pyrifera_M_contig119982.4123.1 ID=prot_M-pyrifera_M_contig119982.4123.1|Name=mRNA_M-pyrifera_M_contig119982.4123.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
LEDDNENWRNRVQSLLNKYERIDPEEYRLLQENAATTSRALEETKAEVQR
LTTEWSESVAARDKFRSALGATVAVKKRQQQELATQTEELAKQTALIASR
DQKVEQLRALAKKKVSDRKELQTKYHELEVTFTMAEKRAKDSEELLQKLT
AELSTAKEETATA
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mRNA from alignment at M-pyrifera_M_contig119982:28..516-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119982.4123.1 ID=mRNA_M-pyrifera_M_contig119982.4123.1|Name=mRNA_M-pyrifera_M_contig119982.4123.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig119982:28..516- (Macrocystis pyrifera P11B4 male)
CTGGAGGACGACAACGAGAACTGGCGCAACCGCGTGCAGTCGCTTCTCAA
CAAGTACGAGCGTATCGATCCCGAGGAGTACCGTCTCCTCCAGGAGAACG
CCGCCACCACCTCCAGAGCACTGGAGGAGACGAAGGCTGAGGTGCAGAGG
CTCACCACTGAGTGGAGTGAGTCGGTGGCTGCTCGAGATAAGTTCAGGAG
TGCGCTCGGTGCCACAGTGGCTGTGAAGAAGCGCCAGCAGCAAGAGTTGG
CCACGCAGACGGAGGAGCTGGCCAAGCAGACGGCGCTCATCGCCAGCCGC
GACCAAAAGGTCGAGCAGCTCAGAGCACTGGCGAAGAAGAAGGTAAGCGA
CAGGAAGGAGCTGCAGACCAAGTACCACGAGCTGGAGGTGACCTTCACCA
TGGCAGAGAAGCGGGCGAAGGATAGCGAGGAGCTCCTCCAGAAGCTCACC
GCCGAGCTGTCTACTGCCAAGGAAGAAACTGCCACCGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119982:28..516-

>mRNA_M-pyrifera_M_contig119982.4123.1 ID=mRNA_M-pyrifera_M_contig119982.4123.1|Name=mRNA_M-pyrifera_M_contig119982.4123.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig119982:28..516- (Macrocystis pyrifera P11B4 male)
CTGGAGGACGACAACGAGAACTGGCGCAACCGCGTGCAGTCGCTTCTCAA
CAAGTACGAGCGTATCGATCCCGAGGAGTACCGTCTCCTCCAGGAGAACG
CCGCCACCACCTCCAGAGCACTGGAGGAGACGAAGGCTGAGGTGCAGAGG
CTCACCACTGAGTGGAGTGAGTCGGTGGCTGCTCGAGATAAGTTCAGGAG
TGCGCTCGGTGCCACAGTGGCTGTGAAGAAGCGCCAGCAGCAAGAGTTGG
CCACGCAGACGGAGGAGCTGGCCAAGCAGACGGCGCTCATCGCCAGCCGC
GACCAAAAGGTCGAGCAGCTCAGAGCACTGGCGAAGAAGAAGGTAAGCGA
CAGGAAGGAGCTGCAGACCAAGTACCACGAGCTGGAGGTGACCTTCACCA
TGGCAGAGAAGCGGGCGAAGGATAGCGAGGAGCTCCTCCAGAAGCTCACC
GCCGAGCTGTCTACTGCCAAGGAAGAAACTGCCACCGCGCTGGAGGACGA
CAACGAGAACTGGCGCAACCGCGTGCAGTCGCTTCTCAACAAGTACGAGC
GTATCGATCCCGAGGAGTACCGTCTCCTCCAGGAGAACGCCGCCACCACC
TCCAGAGCACTGGAGGAGACGAAGGCTGAGGTGCAGAGGCTCACCACTGA
GTGGAGTGAGTCGGTGGCTGCTCGAGATAAGTTCAGGAGTGCGCTCGGTG
CCACAGTGGCTGTGAAGAAGCGCCAGCAGCAAGAGTTGGCCACGCAGACG
GAGGAGCTGGCCAAGCAGACGGCGCTCATCGCCAGCCGCGACCAAAAGGT
CGAGCAGCTCAGAGCACTGGCGAAGAAGAAGGTAAGCGACAGGAAGGAGC
TGCAGACCAAGTACCACGAGCTGGAGGTGACCTTCACCATGGCAGAGAAG
CGGGCGAAGGATAGCGAGGAGCTCCTCCAGAAGCTCACCGCCGAGCTGTC
TACTGCCAAGGAAGAAACTGCCACCGCG
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