mRNA_M-pyrifera_M_contig119981.4122.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119981.4122.1
Unique NamemRNA_M-pyrifera_M_contig119981.4122.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig119981.4122.1 vs. uniprot
Match: L8GHJ4_ACACA (Cation efflux family superfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GHJ4_ACACA)

HSP 1 Score: 97.1 bits (240), Expect = 2.160e-20
Identity = 48/83 (57.83%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    7 KATRRGMSDDMTFGWARTEILGALINGTFLLSLCLYIFLESIPEIISPSEDISGGWLIGVGAAGVFVNTLGTVVFAITGQAHG 255
            +A++R  SD M++GW R+EILG L NG FLLSLCLY+ LESIP  I P E  SG   I V A G+ +NT GT+VFA TG +HG
Sbjct:   93 QASKRESSDQMSYGWVRSEILGGLTNGCFLLSLCLYVALESIPRFIDPPEFDSGWPFIIVAACGLGINTFGTIVFAFTGLSHG 175
[Close]
BLAST of mRNA_M-pyrifera_M_contig119981.4122.1 vs. uniprot
Match: UPI000645204B (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000645204B)

HSP 1 Score: 91.7 bits (226), Expect = 1.390e-18
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 AGKATRRGMSDDMTFGWARTEILGALINGTFLLSLCLYIFLESIPEIISPSEDISGGWLIGVGAAGVFVNTLGTVVFAITGQAH 252
            A  A +RG  D M++GWAR E+LG L NG FL+S+ +Y+ LE+IP  I P     G   I + A+G+ +NTLGT+VFA TGQAH
Sbjct:  100 AQNAAKRGSDDQMSYGWARAEVLGGLTNGCFLISMGIYVALEAIPRFIHPQPMEQGIVFISIAASGLAINTLGTIVFACTGQAH 183
[Close]
BLAST of mRNA_M-pyrifera_M_contig119981.4122.1 vs. uniprot
Match: A0A8J4Q0R0_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q0R0_9MYCE)

HSP 1 Score: 90.9 bits (224), Expect = 2.760e-18
Identity = 49/85 (57.65%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:    1 AGKATRRGMSDDMTFGWARTEILGALINGTFLLSLCLYIFLESIPEIISPSEDISGGWLIGVGA-AGVFVNTLGTVVFAITGQAH 252
            A KA  R   D M++GWARTEILG L NG FLLSL LY+ L++IP+II P E I GG +  + A AG+ +N LGT+VFA+TG AH
Sbjct:   73 AQKAAERDSDDIMSYGWARTEILGGLTNGCFLLSLSLYVGLDAIPKIIRP-EPIEGGLIFMIVAGAGLAINVLGTIVFALTGMAH 156
[Close]
BLAST of mRNA_M-pyrifera_M_contig119981.4122.1 vs. uniprot
Match: D3BGD2_POLPP (Putative zinc transporter n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BGD2_POLPP)

HSP 1 Score: 89.7 bits (221), Expect = 7.290e-18
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    1 AGKATRRGMSDDMTFGWARTEILGALINGTFLLSLCLYIFLESIPEIISPSEDISGGWLIGVGAAGVFVNTLGTVVFAITGQAH 252
            A +A +R   D M++GWAR E+LG L NG FL+S+ LY+ LE++P II P     G   + V  AG+ +NT+GT+VFA+TGQ+H
Sbjct:   75 AQRAAKRESDDSMSYGWARAEVLGGLTNGCFLISMGLYVALEAVPRIIRPEPMDEGLIFMAVAGAGLAINTIGTIVFAVTGQSH 158
[Close]
BLAST of mRNA_M-pyrifera_M_contig119981.4122.1 vs. uniprot
Match: A0A6B2LHH1_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LHH1_9EUKA)

HSP 1 Score: 84.7 bits (208), Expect = 3.390e-17
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:    7 KATRRGMSDDMTFGWARTEILGALINGTFLLSLCLYIFLESIPEIISPSEDISGGW-LIGVGAAGVFVNTLGTVVFAITGQAH 252
            K++    S  MT+GW R EILGA++NG FL+SLC+YI LE+IP+II     +   W  IG+ A+G  +NT+GT++F++    H
Sbjct:   44 KSSNENKSVSMTYGWRRAEILGAVMNGCFLISLCVYIVLEAIPKIIKNPTPLDSSWYFIGISASGFVINTIGTILFSLISGGH 126
[Close]
BLAST of mRNA_M-pyrifera_M_contig119981.4122.1 vs. uniprot
Match: A0A2P6NGS8_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NGS8_9EUKA)

HSP 1 Score: 85.1 bits (209), Expect = 2.760e-16
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:    1 AGKATRRGMSDDMTFGWARTEILGALINGTFLLSLCLYIFLESIPEIISPSEDISGGWLIGVGAAGVFVNTLGTVVFA 234
            A KA++  MS  M++GWAR+E LGAL NG FLLSLCLY+ L++IP  ISP         I V AAG+ +NT GT +FA
Sbjct:   98 ARKASKWNMSHSMSYGWARSETLGALTNGMFLLSLCLYVILQTIPRFISPEPVTDSLMFIIVAAAGLLINTFGTAIFA 175
[Close]
BLAST of mRNA_M-pyrifera_M_contig119981.4122.1 vs. uniprot
Match: F0ZXF1_DICPU (Uncharacterized protein (Fragment) n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZXF1_DICPU)

HSP 1 Score: 80.1 bits (196), Expect = 9.720e-15
Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    1 AGKATRRGMSDDMTFGWARTEILGALINGTFLLSLCLYIFLESIPEIISPSE-DISGGW----LIGVGAAGVFVNTLGTV 225
            A KA +R   + M++GWARTE+LG L NG FLLS+CLY+ LESIP  I P+E ++ G +     + V AAG+F+N LGT+
Sbjct:   47 AAKAAKRDSDNLMSYGWARTELLGGLTNGIFLLSMCLYVALESIPRFIEPAELELKGQYHGYIFMIVAAAGLFINILGTI 126
[Close]
BLAST of mRNA_M-pyrifera_M_contig119981.4122.1 vs. uniprot
Match: A0A152A7S5_9MYCE (Putative zinc transporter n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A7S5_9MYCE)

HSP 1 Score: 79.7 bits (195), Expect = 2.160e-14
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1 
Query:    1 AGKATRRGMSDDMTFGWARTEILGALINGTFLLSLCLYIFLESIPEIISPSEDISGGWLIGVGAAGVFVNTLGTVVFAITG 243
            A KA +R   ++M++GWARTEILG L NG FLLS+ LY+ LE+IP++I P     G   + V  AG+ +N  GT+VFA +G
Sbjct:   78 AQKAAQRDSDNNMSYGWARTEILGGLTNGCFLLSMSLYVALEAIPKMIHPVPMEGGIIFMSVAGAGLVINITGTLVFAFSG 158
[Close]
BLAST of mRNA_M-pyrifera_M_contig119981.4122.1 vs. uniprot
Match: U4KX42_PYROM (Similar to Zinc/cadmium resistance protein acc. no. P20107 n=1 Tax=Pyronema omphalodes (strain CBS 100304) TaxID=1076935 RepID=U4KX42_PYROM)

HSP 1 Score: 79.7 bits (195), Expect = 2.320e-14
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:    7 KATRRGMSDDMTFGWARTEILGALINGTFLLSLCLYIFLESIPEIISPSEDISGGWLIGVGAAGVFVNTLGTVVFAITGQAHG 255
            K  +   ++D T+GW R E+LGAL+NG FLL+LCL IFLE+I   + P+E  S   + GVG AG+  N LG  +F   G +HG
Sbjct:   57 KLAKSKRTNDYTYGWQRAEVLGALVNGVFLLALCLSIFLEAIQRFVDPTEIKSPQLVFGVGCAGLASNILGLFLFHDHGHSHG 139
[Close]
BLAST of mRNA_M-pyrifera_M_contig119981.4122.1 vs. uniprot
Match: T1L0U3_TETUR (Uncharacterized protein n=4 Tax=Tetranychus urticae TaxID=32264 RepID=T1L0U3_TETUR)

HSP 1 Score: 75.5 bits (184), Expect = 6.010e-13
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:   40 TFGWARTEILGALINGTFLLSLCLYIFLESIPEIISPSEDISGGWLIGVGAAGVFVNTLGTVVF-AITGQAHG 255
            TFGWAR E+LGAL+N  FL++LC  IF+ESI    +P E  +   L+GVG AG+ VN +G ++F    G +HG
Sbjct:   70 TFGWARAEVLGALVNAVFLIALCFSIFVESIKRFYNPEELHAPSLLLGVGVAGLIVNIIGLILFHGAGGHSHG 142
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119981.4122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8GHJ4_ACACA2.160e-2057.83Cation efflux family superfamily protein n=1 Tax=A... [more]
UPI000645204B1.390e-1851.19hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A8J4Q0R0_9MYCE2.760e-1857.65Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
D3BGD2_POLPP7.290e-1848.81Putative zinc transporter n=1 Tax=Polysphondylium ... [more]
A0A6B2LHH1_9EUKA3.390e-1745.78Uncharacterized protein (Fragment) n=1 Tax=Arcella... [more]
A0A2P6NGS8_9EUKA2.760e-1653.85Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
F0ZXF1_DICPU9.720e-1551.25Uncharacterized protein (Fragment) n=1 Tax=Dictyos... [more]
A0A152A7S5_9MYCE2.160e-1449.38Putative zinc transporter n=1 Tax=Tieghemostelium ... [more]
U4KX42_PYROM2.320e-1446.99Similar to Zinc/cadmium resistance protein acc. no... [more]
T1L0U3_TETUR6.010e-1349.32Uncharacterized protein n=4 Tax=Tetranychus urtica... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119981contigM-pyrifera_M_contig119981:44..535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score76.6
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog337075.U4KX42
Preferred nameZRC1
KEGG koko:K14688
KEGG TC2.A.4.2
KEGG Pathwayko04978,map04978
Hectar predicted targeting categorysignal anchor
GOsGO:0000041,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006810,GO:0006811,GO:0006812,GO:0006824,GO:0006829,GO:0006873,GO:0006875,GO:0006877,GO:0006882,GO:0006950,GO:0008150,GO:0008324,GO:0009636,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0012505,GO:0015075,GO:0015087,GO:0015318,GO:0016020,GO:0016021,GO:0019725,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0031090,GO:0031224,GO:0031984,GO:0032879,GO:0034220,GO:0042175,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0046873,GO:0046915,GO:0046916,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055065,GO:0055068,GO:0055069,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0061088,GO:0061687,GO:0065007,GO:0065008,GO:0070838,GO:0070887,GO:0071241,GO:0071248,GO:0071276,GO:0071577,GO:0071585,GO:0072503,GO:0072507,GO:0072509,GO:0072511,GO:0097237,GO:0097501,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098754,GO:0098771,GO:0098805,GO:0098827,GO:0098849,GO:0098852,GO:1990170,GO:1990748
EggNOG free text desc.Zinc cadmium resistance protein
EggNOG OGs38CHY@33154,3NV9V@4751,3QKVF@4890,COG1230@1,KOG1483@2759
COG Functional cat.P
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size492
Cds size468
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.576683-UTR-M-pyrifera_M_contig119981:43..671622815719.576683-UTR-M-pyrifera_M_contig119981:43..67Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119981 44..67 +
1692277537.225628-UTR-M-pyrifera_M_contig119981:43..671692277537.225628-UTR-M-pyrifera_M_contig119981:43..67Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119981 44..67 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.5889175-CDS-M-pyrifera_M_contig119981:67..5351622815719.5889175-CDS-M-pyrifera_M_contig119981:67..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119981 68..535 +
1692277537.2372954-CDS-M-pyrifera_M_contig119981:67..5351692277537.2372954-CDS-M-pyrifera_M_contig119981:67..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119981 68..535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119981.4122.1prot_M-pyrifera_M_contig119981.4122.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119981 68..535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119981.4122.1

>prot_M-pyrifera_M_contig119981.4122.1 ID=prot_M-pyrifera_M_contig119981.4122.1|Name=mRNA_M-pyrifera_M_contig119981.4122.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp
MSDDMTFGWARTEILGALINGTFLLSLCLYIFLESIPEIISPSEDISGGW
LIGVGAAGVFVNTLGTVVFAITGQAHGHSHAHGHGHGHGGDDHGHAHGGD
DHASEKSKLLDHGHSHGGDDHGHAHGGESDHDDHGHAHGGGDDHGHGHGP
KKGMV*
back to top

mRNA from alignment at M-pyrifera_M_contig119981:44..535+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119981.4122.1 ID=mRNA_M-pyrifera_M_contig119981.4122.1|Name=mRNA_M-pyrifera_M_contig119981.4122.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig119981:44..535+ (Macrocystis pyrifera P11B4 male)
GCTGGGAAGGCTACTCGCCGAGGAATGAGCGACGACATGACGTTCGGCTG
GGCTCGCACAGAGATCCTCGGAGCGCTCATCAACGGCACCTTCCTTCTTT
CCCTGTGCCTGTACATTTTCTTGGAGTCTATCCCCGAGATCATCTCTCCA
AGCGAGGATATCTCGGGCGGCTGGCTCATTGGTGTCGGTGCCGCTGGAGT
GTTCGTGAACACACTTGGAACCGTTGTATTCGCTATCACGGGCCAGGCCC
ACGGCCACTCCCATGCTCACGGACATGGACATGGCCATGGAGGCGACGAC
CACGGACATGCCCATGGCGGTGACGACCATGCGTCTGAGAAGTCCAAGCT
GCTCGACCACGGCCACTCCCACGGTGGGGACGATCACGGCCACGCCCATG
GAGGCGAGAGTGACCACGATGACCATGGCCATGCGCACGGCGGCGGCGAC
GACCACGGCCATGGCCATGGTCCTAAGAAGGGAATGGTATGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig119981:44..535+

>mRNA_M-pyrifera_M_contig119981.4122.1 ID=mRNA_M-pyrifera_M_contig119981.4122.1|Name=mRNA_M-pyrifera_M_contig119981.4122.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig119981:44..535+ (Macrocystis pyrifera P11B4 male)
ATGAGCGACGACATGACGTTCGGCTGGGCTCGCACAGAGATCCTCGGAGC
GCTCATCAACGGCACCTTCCTTCTTTCCCTGTGCCTGTACATTTTCTTGG
AGTCTATCCCCGAGATCATCTCTCCAAGCGAGGATATCTCGGGCGGCTGG
CTCATTGGTGTCGGTGCCGCTGGAGTGTTCGTGAACACACTTGGAACCGT
TGTATTCGCTATCACGGGCCAGGCCCACGGCCACTCCCATGCTCACGGAC
ATGGACATGGCCATGGAGGCGACGACCACGGACATGCCCATGGCGGTGAC
GACCATGCGTCTGAGAAGTCCAAGCTGCTCGACCACGGCCACTCCCACGG
TGGGGACGATCACGGCCACGCCCATGGAGGCGAGAGTGACCACGATGACC
ATGGCCATGCGCACGGCGGCGGCGACGACCACGGCCATGGCCATGGTCCT
AAGAAGGGAATGGTATGAATGAGCGACGACATGACGTTCGGCTGGGCTCG
CACAGAGATCCTCGGAGCGCTCATCAACGGCACCTTCCTTCTTTCCCTGT
GCCTGTACATTTTCTTGGAGTCTATCCCCGAGATCATCTCTCCAAGCGAG
GATATCTCGGGCGGCTGGCTCATTGGTGTCGGTGCCGCTGGAGTGTTCGT
GAACACACTTGGAACCGTTGTATTCGCTATCACGGGCCAGGCCCACGGCC
ACTCCCATGCTCACGGACATGGACATGGCCATGGAGGCGACGACCACGGA
CATGCCCATGGCGGTGACGACCATGCGTCTGAGAAGTCCAAGCTGCTCGA
CCACGGCCACTCCCACGGTGGGGACGATCACGGCCACGCCCATGGAGGCG
AGAGTGACCACGATGACCATGGCCATGCGCACGGCGGCGGCGACGACCAC
GGCCATGGCCATGGTCCTAAGAAGGGAATGGTATGA
back to top