mRNA_M-pyrifera_M_contig119973.4118.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119973.4118.1
Unique NamemRNA_M-pyrifera_M_contig119973.4118.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119973.4118.1 vs. uniprot
Match: A0A7S4HJ52_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HJ52_9EUKA)

HSP 1 Score: 124 bits (312), Expect = 1.600e-32
Identity = 56/102 (54.90%), Postives = 82/102 (80.39%), Query Frame = 1 
Query:    4 EQNAFWFLLRMMKGYSLERLYPNSTCALQECFTQFERLVELHLPDLYQLLTTNTMTSSSLYLPQWFQTVFLYSQRMDLSIRVMDLIIIRGIEALFRVGLAIL 309
            E++AFW L+R+MKG+SLER+YP+    + ECF ++E+L++++ P +YQ L+ N   S S Y+ QWFQT+FLYSQRMDL++RV+DL++IR IEALF V +AI+
Sbjct:  166 EEHAFWLLMRLMKGFSLERIYPSQYSVINECFIKYEKLLQIYSPAVYQHLSINLDVSPSFYMQQWFQTIFLYSQRMDLTLRVLDLMMIRKIEALFSVSIAII 267
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BLAST of mRNA_M-pyrifera_M_contig119973.4118.1 vs. uniprot
Match: A0A811LJZ2_9BILA (Hypothetical protein n=1 Tax=Bursaphelenchus okinawaensis TaxID=465554 RepID=A0A811LJZ2_9BILA)

HSP 1 Score: 71.2 bits (173), Expect = 2.500e-12
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = 1 
Query:    4 EQNAFWFLLRMMKGYSLERLYPNSTCALQECFTQFERLVELHLPDLYQLLTTNTMTSSSLYLPQWFQTVFLYSQRMDLSIRVMDLIIIRGIEALFRVGLAIL 309
            E+ AF   +++M+ Y L  LY  +   L  C  Q E LV+  +PDLY     N    +S+Y   WF T+F  +  +DL+ R+MDL ++ G++A+FR+ +AIL
Sbjct:  211 EEEAFAVFVKLMENYRLRELYKPTMTELGLCMFQLECLVQEQMPDLYMHFN-NMGFDTSMYASSWFLTLFTTTLPLDLTNRIMDLFLVDGMDAIFRIAMAIL 311
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BLAST of mRNA_M-pyrifera_M_contig119973.4118.1 vs. uniprot
Match: A0A060TAX8_BLAAD (ARAD1D23628p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060TAX8_BLAAD)

HSP 1 Score: 70.5 bits (171), Expect = 5.540e-12
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 1 
Query:    4 EQNAFWFLLRMMKGYSLERLYPNSTCALQECFTQFERLVELHLPDLYQLLTTNTMTSSSLYLPQWFQTVFLYSQRMDLSIRVMDLIIIRGIEALFRVGLAIL 309
            E  AF  L+R+MK Y L  LY      L     QF+R++E  LPD++  L    + SS +Y  QWF T+F Y   + L +R++D+II  G+EA+ R G+A++
Sbjct:  433 EPEAFCLLVRLMKDYDLRSLYLPEMPGLHLRLYQFDRILEDTLPDVHIHLARQGVRSS-MYASQWFLTLFAYKFPLPLVLRILDIIIAEGVEAILRFGVALM 533
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BLAST of mRNA_M-pyrifera_M_contig119973.4118.1 vs. uniprot
Match: A0A0K0EI46_STRER (Rab-GAP TBC domain-containing protein n=5 Tax=Strongyloididae TaxID=6246 RepID=A0A0K0EI46_STRER)

HSP 1 Score: 70.5 bits (171), Expect = 5.650e-12
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:    4 EQNAFWFLLRMMKGYSLERLYPNSTCALQECFTQFERLVELHLPDLYQLLTTNTMTSSSLYLPQWFQTVFLYSQRMDLSIRVMDLIIIRGIEALFRVGLAIL 309
            E+ AF   +R+M+ Y L  LY  +   L  C  Q E +V+  +PDLY     N    +S+Y   WF T+F  S  +DL+ R+MD  ++ G++A+FR+ +AIL
Sbjct:  375 EEEAFAVFIRLMEDYRLRELYKPTMTDLGLCMFQLECMVQEQMPDLYTHFN-NMGFDTSMYASSWFLTLFTTSLPLDLANRIMDFFLVDGMDAIFRIAMAIL 475
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BLAST of mRNA_M-pyrifera_M_contig119973.4118.1 vs. uniprot
Match: A0A7M7RHT1_STRPU (Rab-GAP TBC domain-containing protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7RHT1_STRPU)

HSP 1 Score: 69.3 bits (168), Expect = 1.430e-11
Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    4 EQNAFWFLLRMMKGYSLERLYPNSTCALQECFTQFERLVELHLPDLYQLLTTNTMTSSSLYLPQWFQTVFLYSQRMDLSIRVMDLIIIRGIEALFRVGLAIL 309
            E+ AF  L+++M+ Y +  L+  +   L  C  QFE +++  LPDL++  T      +S+Y   WF T+F     + LS+R+MDL I  G+EA+F++G A+L
Sbjct:  365 EEEAFCVLVKIMQEYGMRELFKPNMAHLGLCMFQFECMIQDLLPDLFKHFTAQGF-HTSMYASSWFLTLFAVCLPISLSMRIMDLFISEGMEAIFKIGAAML 465
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BLAST of mRNA_M-pyrifera_M_contig119973.4118.1 vs. uniprot
Match: A0A7I8XAH2_BURXY ((pine wood nematode) hypothetical protein n=1 Tax=Bursaphelenchus xylophilus TaxID=6326 RepID=A0A7I8XAH2_BURXY)

HSP 1 Score: 68.9 bits (167), Expect = 1.940e-11
Identity = 37/102 (36.27%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:    4 EQNAFWFLLRMMKGYSLERLYPNSTCALQECFTQFERLVELHLPDLYQLLTTNTMTSSSLYLPQWFQTVFLYSQRMDLSIRVMDLIIIRGIEALFRVGLAIL 309
            E+ AF   +++M+ Y L  LY  +   L  C  Q E LV+  +PD+Y     N    +S+Y   WF T+F  +  +DL+ R+MD  ++ G++A+FR+ LAIL
Sbjct:  211 EEEAFAVFVKLMENYRLRELYKPTMTELGLCMFQLECLVQEQMPDMYMHFN-NMGFDTSMYASSWFLTLFTTTLPLDLTNRIMDWFLVDGMDAIFRIALAIL 311
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BLAST of mRNA_M-pyrifera_M_contig119973.4118.1 vs. uniprot
Match: A0A6G0V4L9_9BILA (Rab-GAP TBC domain-containing protein n=1 Tax=Halicephalobus sp. NKZ332 TaxID=2598192 RepID=A0A6G0V4L9_9BILA)

HSP 1 Score: 68.6 bits (166), Expect = 2.680e-11
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:    4 EQNAFWFLLRMMKGYSLERLYPNSTCALQECFTQFERLVELHLPDLYQLLTTNTMTSSSLYLPQWFQTVFLYSQRMDLSIRVMDLIIIRGIEALFRVGLAIL 309
            E+ AF   +++M+ Y L  LY  +   L  C  Q E +V+  +PDLY     N    +S+Y   WF T+F  +  ++L+ R+MDL ++ GI A+FRV +AIL
Sbjct:  413 EEEAFAVFVKLMEQYRLRELYKPAMTELGLCMFQLECIVQEQMPDLYTHFN-NMGFDTSMYASSWFLTLFTTTLPLELANRIMDLFLVDGISAIFRVAIAIL 513
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BLAST of mRNA_M-pyrifera_M_contig119973.4118.1 vs. uniprot
Match: A0A813HJZ4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HJZ4_POLGL)

HSP 1 Score: 65.9 bits (159), Expect = 1.760e-10
Identity = 33/102 (32.35%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:    4 EQNAFWFLLRMMKGYSLERLYPNSTCALQECFTQFERLVELHLPDLYQLLTTNTMTSSSLYLPQWFQTVFLYSQRMDLSIRVMDLIIIRGIEALFRVGLAIL 309
            E +AF  L+ +++ Y +  L+  +   L + F Q +RL+E+H+P LY  L    +   ++Y  QWF TV +Y+      +RV D+ +  G++ +FR+ LA+L
Sbjct:  166 EDDAFLMLISLLENYRMAGLFMPNLPLLNKYFFQLQRLLEMHMPQLYNHLAEQGV-EPTMYASQWFMTVCIYNFPFATVVRVWDIFLAEGVKIIFRIALALL 266
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BLAST of mRNA_M-pyrifera_M_contig119973.4118.1 vs. uniprot
Match: A0A4P9XAY3_9FUNG (Rab-GAP TBC domain-containing protein n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9XAY3_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 2.240e-10
Identity = 33/102 (32.35%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:    4 EQNAFWFLLRMMKGYSLERLYPNSTCALQECFTQFERLVELHLPDLYQLLTTNTMTSSSLYLPQWFQTVFLYSQRMDLSIRVMDLIIIRGIEALFRVGLAIL 309
            ++ AF  L+++M  Y    ++      LQ    QF+RL+E   P L++ L    +  SS+Y+ QWF T+F Y   +D+ +R++D++I  G E +F+   A+L
Sbjct:  161 DEEAFSLLVKLMSDYGFRDMFAPDMAGLQLRLFQFDRLLEEQFPALHRHLLAQDI-KSSMYVSQWFMTLFAYRFPLDMVLRIVDIVIAEGFEIIFKFAFALL 261
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BLAST of mRNA_M-pyrifera_M_contig119973.4118.1 vs. uniprot
Match: A0A813IYK8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IYK8_POLGL)

HSP 1 Score: 65.9 bits (159), Expect = 2.260e-10
Identity = 33/102 (32.35%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:    4 EQNAFWFLLRMMKGYSLERLYPNSTCALQECFTQFERLVELHLPDLYQLLTTNTMTSSSLYLPQWFQTVFLYSQRMDLSIRVMDLIIIRGIEALFRVGLAIL 309
            E +AF  L+ +++ Y +  L+  +   L + F Q +RL+E+H+P LY  L    +   ++Y  QWF TV +Y+      +RV D+ +  G++ +FR+ LA+L
Sbjct:  380 EDDAFLMLISLLENYRMAGLFMPNLPLLNKYFFQLQRLLEMHMPQLYNHLAEQGV-EPTMYASQWFMTVCIYNFPFATVVRVWDIFLAEGVKIIFRIALALL 480
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119973.4118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HJ52_9EUKA1.600e-3254.90Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A811LJZ2_9BILA2.500e-1237.25Hypothetical protein n=1 Tax=Bursaphelenchus okina... [more]
A0A060TAX8_BLAAD5.540e-1239.22ARAD1D23628p n=1 Tax=Blastobotrys adeninivorans Ta... [more]
A0A0K0EI46_STRER5.650e-1237.25Rab-GAP TBC domain-containing protein n=5 Tax=Stro... [more]
A0A7M7RHT1_STRPU1.430e-1136.27Rab-GAP TBC domain-containing protein n=2 Tax=Echi... [more]
A0A7I8XAH2_BURXY1.940e-1136.27(pine wood nematode) hypothetical protein n=1 Tax=... [more]
A0A6G0V4L9_9BILA2.680e-1137.25Rab-GAP TBC domain-containing protein n=1 Tax=Hali... [more]
A0A813HJZ4_POLGL1.760e-1032.35Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A4P9XAY3_9FUNG2.240e-1032.35Rab-GAP TBC domain-containing protein n=1 Tax=Caul... [more]
A0A813IYK8_POLGL2.260e-1032.35Hypothetical protein n=1 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119973contigM-pyrifera_M_contig119973:48..356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score77.8
Seed ortholog evalue3.3e-12
Seed eggNOG ortholog10224.XP_006818008.1
Preferred nameEVI5L
KEGG koko:K20242
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001667,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006810,GO:0006886,GO:0006928,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0008047,GO:0008104,GO:0008150,GO:0008283,GO:0009888,GO:0009987,GO:0010631,GO:0010639,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016192,GO:0016197,GO:0016477,GO:0016482,GO:0017016,GO:0017137,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030234,GO:0030334,GO:0030695,GO:0030707,GO:0030855,GO:0031267,GO:0031338,GO:0031344,GO:0031345,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0033036,GO:0033043,GO:0034613,GO:0040011,GO:0040012,GO:0042147,GO:0042886,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043547,GO:0044087,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0046907,GO:0048468,GO:0048477,GO:0048519,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051049,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051270,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0060429,GO:0060491,GO:0060589,GO:0060627,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0090130,GO:0090132,GO:0090630,GO:0098772,GO:0120032,GO:0120033,GO:0120035,GO:1902017,GO:1902018,GO:1902115,GO:1902116,GO:2000145
EggNOG free text desc.Ecotropic viral integration site
EggNOG OGs3AM61@33154,3BEDT@33208,3CR7Q@33213,KOG4436@1,KOG4436@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.396243-CDS-M-pyrifera_M_contig119973:47..3561622815719.396243-CDS-M-pyrifera_M_contig119973:47..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119973 48..356 +
1692277537.158508-CDS-M-pyrifera_M_contig119973:47..3561692277537.158508-CDS-M-pyrifera_M_contig119973:47..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119973 48..356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119973.4118.1prot_M-pyrifera_M_contig119973.4118.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119973 48..356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119973.4118.1

>prot_M-pyrifera_M_contig119973.4118.1 ID=prot_M-pyrifera_M_contig119973.4118.1|Name=mRNA_M-pyrifera_M_contig119973.4118.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
VEQNAFWFLLRMMKGYSLERLYPNSTCALQECFTQFERLVELHLPDLYQL
LTTNTMTSSSLYLPQWFQTVFLYSQRMDLSIRVMDLIIIRGIEALFRVGL
AIL
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mRNA from alignment at M-pyrifera_M_contig119973:48..356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119973.4118.1 ID=mRNA_M-pyrifera_M_contig119973.4118.1|Name=mRNA_M-pyrifera_M_contig119973.4118.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig119973:48..356+ (Macrocystis pyrifera P11B4 male)
GTGGAACAGAATGCCTTTTGGTTCCTCTTGCGGATGATGAAAGGATATTC
TCTGGAGCGGCTCTATCCCAACAGCACGTGCGCGCTGCAGGAGTGTTTCA
CGCAGTTCGAGCGCCTGGTGGAGCTGCACCTGCCAGATCTCTACCAACTG
CTCACCACCAACACTATGACCTCTTCCTCGCTCTATCTCCCCCAATGGTT
TCAAACAGTCTTCTTGTACAGCCAGAGAATGGACCTTTCCATCCGCGTCA
TGGACCTCATCATCATCCGCGGCATAGAAGCACTCTTCAGAGTGGGCCTC
GCCATCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119973:48..356+

>mRNA_M-pyrifera_M_contig119973.4118.1 ID=mRNA_M-pyrifera_M_contig119973.4118.1|Name=mRNA_M-pyrifera_M_contig119973.4118.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig119973:48..356+ (Macrocystis pyrifera P11B4 male)
GTGGAACAGAATGCCTTTTGGTTCCTCTTGCGGATGATGAAAGGATATTC
TCTGGAGCGGCTCTATCCCAACAGCACGTGCGCGCTGCAGGAGTGTTTCA
CGCAGTTCGAGCGCCTGGTGGAGCTGCACCTGCCAGATCTCTACCAACTG
CTCACCACCAACACTATGACCTCTTCCTCGCTCTATCTCCCCCAATGGTT
TCAAACAGTCTTCTTGTACAGCCAGAGAATGGACCTTTCCATCCGCGTCA
TGGACCTCATCATCATCCGCGGCATAGAAGCACTCTTCAGAGTGGGCCTC
GCCATCCTCGTGGAACAGAATGCCTTTTGGTTCCTCTTGCGGATGATGAA
AGGATATTCTCTGGAGCGGCTCTATCCCAACAGCACGTGCGCGCTGCAGG
AGTGTTTCACGCAGTTCGAGCGCCTGGTGGAGCTGCACCTGCCAGATCTC
TACCAACTGCTCACCACCAACACTATGACCTCTTCCTCGCTCTATCTCCC
CCAATGGTTTCAAACAGTCTTCTTGTACAGCCAGAGAATGGACCTTTCCA
TCCGCGTCATGGACCTCATCATCATCCGCGGCATAGAAGCACTCTTCAGA
GTGGGCCTCGCCATCCTC
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