mRNA_M-pyrifera_M_contig11992.4113.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11992.4113.1
Unique NamemRNA_M-pyrifera_M_contig11992.4113.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11992.4113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11992contigM-pyrifera_M_contig11992:2820..3193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size374
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11992.4113.1prot_M-pyrifera_M_contig11992.4113.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11992 2831..3142 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.161258-UTR-M-pyrifera_M_contig11992:2819..28301622815719.161258-UTR-M-pyrifera_M_contig11992:2819..2830Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11992 2820..2830 +
1692277537.050421-UTR-M-pyrifera_M_contig11992:2819..28301692277537.050421-UTR-M-pyrifera_M_contig11992:2819..2830Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11992 2820..2830 +
1622815719.18957-UTR-M-pyrifera_M_contig11992:3142..31931622815719.18957-UTR-M-pyrifera_M_contig11992:3142..3193Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11992 3143..3193 +
1692277537.0830598-UTR-M-pyrifera_M_contig11992:3142..31931692277537.0830598-UTR-M-pyrifera_M_contig11992:3142..3193Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11992 3143..3193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.176685-CDS-M-pyrifera_M_contig11992:2830..31421622815719.176685-CDS-M-pyrifera_M_contig11992:2830..3142Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11992 2831..3142 +
1692277537.0690787-CDS-M-pyrifera_M_contig11992:2830..31421692277537.0690787-CDS-M-pyrifera_M_contig11992:2830..3142Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11992 2831..3142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11992.4113.1

>prot_M-pyrifera_M_contig11992.4113.1 ID=prot_M-pyrifera_M_contig11992.4113.1|Name=mRNA_M-pyrifera_M_contig11992.4113.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MPPLWRLVLHVTCARMACLHSIERGRNREQLYIHRSRRSMENTAARSRNH
FSRRTERGLLVMEDVFLCVCTLTFWTGCYGICFVLYIPERAATFLFLMVS
EYE*
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mRNA from alignment at M-pyrifera_M_contig11992:2820..3193+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11992.4113.1 ID=mRNA_M-pyrifera_M_contig11992.4113.1|Name=mRNA_M-pyrifera_M_contig11992.4113.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=374bp|location=Sequence derived from alignment at M-pyrifera_M_contig11992:2820..3193+ (Macrocystis pyrifera P11B4 male)
AGAACTTGCGGATGCCGCCCTTATGGAGGCTTGTTTTGCACGTCACATGT
GCACGGATGGCATGCCTCCATAGTATCGAACGGGGGAGAAATCGAGAGCA
GCTATATATACATAGGAGTAGGCGTAGTATGGAAAACACGGCCGCACGCT
CCCGCAATCATTTTTCCCGTCGCACAGAGCGAGGTTTACTCGTGATGGAA
GATGTATTTTTATGCGTGTGTACACTAACGTTCTGGACTGGCTGTTATGG
TATCTGCTTCGTGCTGTATATTCCAGAAAGAGCGGCTACTTTTCTCTTCT
TGATGGTCTCGGAATACGAGTGACGATCAACACGTCCGCATTTCCAATCG
TAGGCACGAATATACACGCTGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11992:2820..3193+

>mRNA_M-pyrifera_M_contig11992.4113.1 ID=mRNA_M-pyrifera_M_contig11992.4113.1|Name=mRNA_M-pyrifera_M_contig11992.4113.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig11992:2820..3193+ (Macrocystis pyrifera P11B4 male)
ATGCCGCCCTTATGGAGGCTTGTTTTGCACGTCACATGTGCACGGATGGC
ATGCCTCCATAGTATCGAACGGGGGAGAAATCGAGAGCAGCTATATATAC
ATAGGAGTAGGCGTAGTATGGAAAACACGGCCGCACGCTCCCGCAATCAT
TTTTCCCGTCGCACAGAGCGAGGTTTACTCGTGATGGAAGATGTATTTTT
ATGCGTGTGTACACTAACGTTCTGGACTGGCTGTTATGGTATCTGCTTCG
TGCTGTATATTCCAGAAAGAGCGGCTACTTTTCTCTTCTTGATGGTCTCG
GAATACGAGTGAATGCCGCCCTTATGGAGGCTTGTTTTGCACGTCACATG
TGCACGGATGGCATGCCTCCATAGTATCGAACGGGGGAGAAATCGAGAGC
AGCTATATATACATAGGAGTAGGCGTAGTATGGAAAACACGGCCGCACGC
TCCCGCAATCATTTTTCCCGTCGCACAGAGCGAGGTTTACTCGTGATGGA
AGATGTATTTTTATGCGTGTGTACACTAACGTTCTGGACTGGCTGTTATG
GTATCTGCTTCGTGCTGTATATTCCAGAAAGAGCGGCTACTTTTCTCTTC
TTGATGGTCTCGGAATACGAGTGA
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