mRNA_M-pyrifera_M_contig119877.4107.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119877.4107.1
Unique NamemRNA_M-pyrifera_M_contig119877.4107.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119877.4107.1 vs. uniprot
Match: A0A3D5DGB3_9GAMM (Enoyl-CoA hydratase (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DGB3_9GAMM)

HSP 1 Score: 93.6 bits (231), Expect = 1.210e-23
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 MQYENLTVRRDGATTIVTIHRPEKANALNYATLLELEHVALGFRDDIETRAVIFTGSGKHFSAGFDLT 204
            M Y+ +T+  +G    VT +RP KANALNYA L E+EH AL FR+DI+TR V+FTG+GKHFS+GFDLT
Sbjct:    1 MDYKYITIDHNGHVASVTFNRPHKANALNYAMLAEIEHAALAFREDIKTRVVVFTGAGKHFSSGFDLT 68          
BLAST of mRNA_M-pyrifera_M_contig119877.4107.1 vs. uniprot
Match: A0A2E4UPT7_9GAMM (Enoyl-CoA hydratase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E4UPT7_9GAMM)

HSP 1 Score: 96.3 bits (238), Expect = 9.250e-23
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 MQYENLTVRRDGATTIVTIHRPEKANALNYATLLELEHVALGFRDDIETRAVIFTGSGKHFSAGFDLT 204
            M+Y+NL V RDGA  IVT +RP+KANALNY  L E+E VAL FRDD +TR VIF G+GKHFS+G DLT
Sbjct:    1 MKYKNLKVNRDGAIAIVTFNRPDKANALNYEHLSEIEDVALSFRDDADTRVVIFAGAGKHFSSGADLT 68          
BLAST of mRNA_M-pyrifera_M_contig119877.4107.1 vs. uniprot
Match: A0A381WNW2_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381WNW2_9ZZZZ)

HSP 1 Score: 87.0 bits (214), Expect = 5.550e-21
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 MQYENLTVRRDGATTIVTIHRPEKANALNYATLLELEHVALGFRDDIETRAVIFTGSGKHFSAGFDLT 204
            M+Y+ + V R G   +VT +RPEKANALNY  + E+EH AL FRDD   R VIFTG+GKHF++G DLT
Sbjct:    1 MEYDCIQVERGGEVAVVTFNRPEKANALNYRHIEEIEHAALSFRDDEAARVVIFTGAGKHFNSGADLT 68          
BLAST of mRNA_M-pyrifera_M_contig119877.4107.1 vs. uniprot
Match: A0A356K541_9GAMM (Enoyl-CoA hydratase/isomerase family protein n=4 Tax=root TaxID=1 RepID=A0A356K541_9GAMM)

HSP 1 Score: 90.9 bits (224), Expect = 1.500e-20
Identity = 41/66 (62.12%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    7 YENLTVRRDGATTIVTIHRPEKANALNYATLLELEHVALGFRDDIETRAVIFTGSGKHFSAGFDLT 204
            YENLTV ++G+   VT +RP+KANAL++  LL++E+VAL FRDD +TRAV+FTG GKHFS+G DL+
Sbjct:   21 YENLTVEKNGSVATVTFNRPDKANALDHGHLLDIENVALSFRDDPDTRAVVFTGKGKHFSSGADLS 86          
BLAST of mRNA_M-pyrifera_M_contig119877.4107.1 vs. uniprot
Match: A0A2D8ZXH9_9CHLR (Enoyl-CoA hydratase n=4 Tax=root TaxID=1 RepID=A0A2D8ZXH9_9CHLR)

HSP 1 Score: 91.7 bits (226), Expect = 1.650e-20
Identity = 40/66 (60.61%), Postives = 56/66 (84.85%), Query Frame = 1
Query:    7 YENLTVRRDGATTIVTIHRPEKANALNYATLLELEHVALGFRDDIETRAVIFTGSGKHFSAGFDLT 204
            YENLT+ ++G+   +T +RP+KANAL++A LL++E+VAL FRDD +TRAV+FTG GKHFS+G DL+
Sbjct:   78 YENLTIEKNGSVATITFNRPDKANALDHAHLLDIENVALSFRDDPDTRAVVFTGKGKHFSSGADLS 143          
BLAST of mRNA_M-pyrifera_M_contig119877.4107.1 vs. uniprot
Match: A0A2E3WCZ0_9GAMM (Enoyl-CoA hydratase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E3WCZ0_9GAMM)

HSP 1 Score: 90.5 bits (223), Expect = 1.890e-20
Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 MQYENLTVRRDGATTIVTIHRPEKANALNYATLLELEHVALGFRDDIETRAVIFTGSGKHFSAGFDLT 204
            M YENL V +     +VT +RPEKANALNYA L E+EH+AL FRD+ + R VIFTG+GKHFS+G DLT
Sbjct:   14 MDYENLLVEQMEHVALVTFNRPEKANALNYAHLAEIEHLALSFRDEADIRVVIFTGTGKHFSSGADLT 81          
BLAST of mRNA_M-pyrifera_M_contig119877.4107.1 vs. uniprot
Match: A0A6N9C2H8_9GAMM (Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6N9C2H8_9GAMM)

HSP 1 Score: 89.4 bits (220), Expect = 4.280e-20
Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    7 YENLTVRRDGATTIVTIHRPEKANALNYATLLELEHVALGFRDDIETRAVIFTGSGKHFSAGFDL 201
            YENLTV RDG   +VT +RP +ANAL++A L+++E  AL FR+D ETRA++FTG+GKHFS+G DL
Sbjct:    5 YENLTVDRDGHVAVVTFNRPTRANALDHAHLVDIEAAALSFREDTETRAIVFTGAGKHFSSGHDL 69          
BLAST of mRNA_M-pyrifera_M_contig119877.4107.1 vs. uniprot
Match: A0A523M133_9GAMM (Enoyl-CoA hydratase/isomerase family protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523M133_9GAMM)

HSP 1 Score: 87.8 bits (216), Expect = 1.630e-19
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 MQYENLTVRRDGATTIVTIHRPEKANALNYATLLELEHVALGFRDDIETRAVIFTGSGKHFSAGFDLT 204
            M YE++ + R+G    VT +RPEKANALN+  L+E+E VAL FR+D +TR VIFTG+GKHFS+G DLT
Sbjct:    1 MSYEHIRLTREGHIATVTFNRPEKANALNFEHLVEIEDVALSFREDPDTRVVIFTGAGKHFSSGADLT 68          
BLAST of mRNA_M-pyrifera_M_contig119877.4107.1 vs. uniprot
Match: A0A6L7XUB9_9GAMM (Enoyl-CoA hydratase/isomerase family protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7XUB9_9GAMM)

HSP 1 Score: 88.2 bits (217), Expect = 2.690e-19
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    7 YENLTVRRDGATTIVTIHRPEKANALNYATLLELEHVALGFRDDIETRAVIFTGSGKHFSAGFDLT 204
            YE+L V RDGA   VT +RP KANAL++A L E+E  AL FRDD +TR VIFTG+GKHFS+G DLT
Sbjct:   61 YEHLRVARDGAVATVTFNRPHKANALHHAHLAEIEAAALSFRDDGDTRVVIFTGAGKHFSSGADLT 126          
BLAST of mRNA_M-pyrifera_M_contig119877.4107.1 vs. uniprot
Match: A0A2E6J4L2_9BACT (Enoyl-CoA hydratase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2E6J4L2_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 3.300e-19
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    1 MQYENLTVRRDGATTIVTIHRPEKANALNYATLLELEHVALGFRDDIETRAVIFTGSGKHFSAGFDLT 204
            M YE + V R G   +VT +RPEKANALNY  + E+EH AL FRDD   R VIFTG+GKHF++G DLT
Sbjct:   26 MDYECIQVERGGEVAVVTFNRPEKANALNYRHIEEIEHAALSFRDDEAARVVIFTGAGKHFNSGADLT 93          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119877.4107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DGB3_9GAMM1.210e-2361.76Enoyl-CoA hydratase (Fragment) n=1 Tax=Gammaproteo... [more]
A0A2E4UPT7_9GAMM9.250e-2367.65Enoyl-CoA hydratase n=1 Tax=Gammaproteobacteria ba... [more]
A0A381WNW2_9ZZZZ5.550e-2158.82Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A356K541_9GAMM1.500e-2062.12Enoyl-CoA hydratase/isomerase family protein n=4 T... [more]
A0A2D8ZXH9_9CHLR1.650e-2060.61Enoyl-CoA hydratase n=4 Tax=root TaxID=1 RepID=A0A... [more]
A0A2E3WCZ0_9GAMM1.890e-2063.24Enoyl-CoA hydratase n=1 Tax=Gammaproteobacteria ba... [more]
A0A6N9C2H8_9GAMM4.280e-2061.54Enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A523M133_9GAMM1.630e-1960.29Enoyl-CoA hydratase/isomerase family protein n=2 T... [more]
A0A6L7XUB9_9GAMM2.690e-1965.15Enoyl-CoA hydratase/isomerase family protein n=2 T... [more]
A0A2E6J4L2_9BACT3.300e-1960.29Enoyl-CoA hydratase n=1 Tax=Acidobacteria bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119877contigM-pyrifera_M_contig119877:329..532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.9
Seed ortholog evalue3.3e-08
Seed eggNOG ortholog1416760.AYMS01000046_gene2674
Preferred namecrt
KEGG rclassRC00831
KEGG koko:K01715
KEGG ReactionR03026
KEGG Pathwayko00650,ko01200,map00650,map01200
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Enoyl-CoA hydratase/isomerase
EggNOG OGs1HWQA@117743,47HR9@76831,4NFEM@976,COG1024@1,COG1024@2
EC4.2.1.17
COG Functional cat.I
Best tax levelMyroides
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.9013574-CDS-M-pyrifera_M_contig119877:328..5321622815718.9013574-CDS-M-pyrifera_M_contig119877:328..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119877 329..532 -
1692277536.9277532-CDS-M-pyrifera_M_contig119877:328..5321692277536.9277532-CDS-M-pyrifera_M_contig119877:328..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119877 329..532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119877.4107.1prot_M-pyrifera_M_contig119877.4107.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119877 329..532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119877.4107.1

>prot_M-pyrifera_M_contig119877.4107.1 ID=prot_M-pyrifera_M_contig119877.4107.1|Name=mRNA_M-pyrifera_M_contig119877.4107.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
MQYENLTVRRDGATTIVTIHRPEKANALNYATLLELEHVALGFRDDIETR
AVIFTGSGKHFSAGFDLT
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mRNA from alignment at M-pyrifera_M_contig119877:329..532-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119877.4107.1 ID=mRNA_M-pyrifera_M_contig119877.4107.1|Name=mRNA_M-pyrifera_M_contig119877.4107.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig119877:329..532- (Macrocystis pyrifera P11B4 male)
ATGCAATACGAAAACCTCACGGTCCGCCGCGACGGCGCGACTACGATTGT GACTATTCATCGACCCGAGAAGGCGAATGCGTTGAATTACGCCACCTTGC TCGAACTGGAGCATGTTGCGCTGGGGTTTCGCGATGACATCGAAACTCGT GCCGTTATCTTTACCGGCAGTGGCAAGCATTTCAGCGCCGGGTTCGATCT GACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119877:329..532-

>mRNA_M-pyrifera_M_contig119877.4107.1 ID=mRNA_M-pyrifera_M_contig119877.4107.1|Name=mRNA_M-pyrifera_M_contig119877.4107.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig119877:329..532- (Macrocystis pyrifera P11B4 male)
ATGCAATACGAAAACCTCACGGTCCGCCGCGACGGCGCGACTACGATTGT
GACTATTCATCGACCCGAGAAGGCGAATGCGTTGAATTACGCCACCTTGC
TCGAACTGGAGCATGTTGCGCTGGGGTTTCGCGATGACATCGAAACTCGT
GCCGTTATCTTTACCGGCAGTGGCAAGCATTTCAGCGCCGGGTTCGATCT
GACGATGCAATACGAAAACCTCACGGTCCGCCGCGACGGCGCGACTACGA
TTGTGACTATTCATCGACCCGAGAAGGCGAATGCGTTGAATTACGCCACC
TTGCTCGAACTGGAGCATGTTGCGCTGGGGTTTCGCGATGACATCGAAAC
TCGTGCCGTTATCTTTACCGGCAGTGGCAAGCATTTCAGCGCCGGGTTCG
ATCTGACG
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