mRNA_M-pyrifera_M_contig11984.4090.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11984.4090.1
Unique NamemRNA_M-pyrifera_M_contig11984.4090.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11984.4090.1 vs. uniprot
Match: A0A7T8G5K4_SCYLO (Photosystem II reaction center protein L n=10 Tax=Phaeophyceae TaxID=2870 RepID=A0A7T8G5K4_SCYLO)

HSP 1 Score: 133 bits (335), Expect = 4.830e-38
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 3 
Query:   48 LACYTWFSCSNDILYRCNYINAIYPTIGVYSMTGPNPNKQEVEISRTSLYWGLLLFFILAVLFSSYFFN 254
            +AC +WFSCSN+IL+RCNYINAIY TIG YSMTGPNPNKQEVEISRTSLYWGLLLFF+LAVLFSSYFFN
Sbjct:    1 MACSSWFSCSNNILFRCNYINAIYSTIGGYSMTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 69
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BLAST of mRNA_M-pyrifera_M_contig11984.4090.1 vs. uniprot
Match: A0A1L1YA62_9FLOR (Photosystem II reaction center protein L n=6 Tax=Florideophyceae TaxID=2806 RepID=A0A1L1YA62_9FLOR)

HSP 1 Score: 94.4 bits (233), Expect = 1.440e-22
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 3 
Query:   48 LACYTWFSCSNDILYRCNYINAIYPTIGV-YSMTGPNPNKQEVEISRTSLYWGLLLFFILAVLFSSYFFN 254
            +A YTWFS S  I +RC YI AIY  IG  + M+GPNPNK+ VE++RTSL+WGLLL  +LAVLFSSYFFN
Sbjct:    1 MASYTWFSYSYYIFFRCYYIYAIYSKIGDNFIMSGPNPNKEPVELNRTSLFWGLLLILVLAVLFSSYFFN 70
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BLAST of mRNA_M-pyrifera_M_contig11984.4090.1 vs. uniprot
Match: A0A0S0GJY0_COSCS (Cytochrome b559 subunit beta n=68 Tax=Stramenopiles TaxID=33634 RepID=A0A0S0GJY0_COSCS)

HSP 1 Score: 90.9 bits (224), Expect = 1.750e-21
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    1 TRNTNQPVAYPIFTFRWLAIHGLAVPTIFFIGAITSMQFIQR 126
            TRNTNQPVAYPIFTFRWLAIHGLAVPTIFFIGAITSMQFIQR
Sbjct:    2 TRNTNQPVAYPIFTFRWLAIHGLAVPTIFFIGAITSMQFIQR 43
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BLAST of mRNA_M-pyrifera_M_contig11984.4090.1 vs. uniprot
Match: A0A8K1YUB7_9FLOR (Photosystem II protein L n=2 Tax=Kumanoa TaxID=644269 RepID=A0A8K1YUB7_9FLOR)

HSP 1 Score: 88.2 bits (217), Expect = 3.740e-20
Identity = 43/67 (64.18%), Postives = 51/67 (76.12%), Query Frame = 3 
Query:   57 YTWFSCSNDILYRCNYINAIYPTIGV-YSMTGPNPNKQEVEISRTSLYWGLLLFFILAVLFSSYFFN 254
            YTWFS S +      YI AIY  +G  Y+M+GPNPNK  VE++RTSL+WGLLL F+LAVLFSSYFFN
Sbjct:    4 YTWFSYSYNFFLGSYYIYAIYTKVGENYNMSGPNPNKVPVELNRTSLFWGLLLIFVLAVLFSSYFFN 70
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BLAST of mRNA_M-pyrifera_M_contig11984.4090.1 vs. uniprot
Match: A0A3R5UAF7_9STRA (Cytochrome b559 subunit beta n=2 Tax=Eustigmatales TaxID=425074 RepID=A0A3R5UAF7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.580e-18
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    4 RNTNQPVAYPIFTFRWLAIHGLAVPTIFFIGAITSMQFIQR 126
            R+TNQPV YPIFTFRWLA+HGLAVPTIFF+G ITSMQFIQR
Sbjct:    3 RSTNQPVVYPIFTFRWLAVHGLAVPTIFFLGGITSMQFIQR 43
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BLAST of mRNA_M-pyrifera_M_contig11984.4090.1 vs. uniprot
Match: A0A1C9CCM0_9RHOD (Cytochrome b559 subunit beta n=2 Tax=Rhodophyta TaxID=2763 RepID=A0A1C9CCM0_9RHOD)

HSP 1 Score: 82.4 bits (202), Expect = 3.730e-18
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    7 NTNQPVAYPIFTFRWLAIHGLAVPTIFFIGAITSMQFIQR 126
            NTNQP+ YPIFTFRWLAIHGL VPT+FF+GAITSMQFIQR
Sbjct:    5 NTNQPITYPIFTFRWLAIHGLGVPTVFFLGAITSMQFIQR 44
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BLAST of mRNA_M-pyrifera_M_contig11984.4090.1 vs. uniprot
Match: PSBF_NEOYE (Cytochrome b559 subunit beta n=17 Tax=Eukaryota TaxID=2759 RepID=PSBF_NEOYE)

HSP 1 Score: 82.4 bits (202), Expect = 3.730e-18
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    7 NTNQPVAYPIFTFRWLAIHGLAVPTIFFIGAITSMQFIQR 126
            N NQPV+YPIFTFRWLAIHGLA+PT+FF+GAITSMQFIQR
Sbjct:    5 NANQPVSYPIFTFRWLAIHGLAIPTVFFLGAITSMQFIQR 44
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BLAST of mRNA_M-pyrifera_M_contig11984.4090.1 vs. uniprot
Match: PSBF_EMIHU (Cytochrome b559 subunit beta n=11 Tax=Eukaryota TaxID=2759 RepID=PSBF_EMIHU)

HSP 1 Score: 82.0 bits (201), Expect = 5.060e-18
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    7 NTNQPVAYPIFTFRWLAIHGLAVPTIFFIGAITSMQFIQR 126
            NTNQPVAYPIFTFRWL IH LAVPT+FF+GAITSMQFIQR
Sbjct:    3 NTNQPVAYPIFTFRWLTIHALAVPTVFFLGAITSMQFIQR 42
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BLAST of mRNA_M-pyrifera_M_contig11984.4090.1 vs. uniprot
Match: A0A0D3M5G8_9STRA (Cytochrome b559 subunit beta n=3 Tax=cellular organisms TaxID=131567 RepID=A0A0D3M5G8_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.060e-18
Identity = 34/41 (82.93%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    4 RNTNQPVAYPIFTFRWLAIHGLAVPTIFFIGAITSMQFIQR 126
            +NTNQPV YPIFTFRWLA+HGLAVPT+FF+G+IT+MQFIQR
Sbjct:    2 QNTNQPVVYPIFTFRWLAVHGLAVPTVFFLGSITAMQFIQR 42
[Close]
BLAST of mRNA_M-pyrifera_M_contig11984.4090.1 vs. uniprot
Match: A0A3R5TZL4_9STRA (Cytochrome b559 subunit beta n=1 Tax=Characiopsis acuta TaxID=2040456 RepID=A0A3R5TZL4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.160e-18
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    4 RNTNQPVAYPIFTFRWLAIHGLAVPTIFFIGAITSMQFIQR 126
            R TNQPV YPIFTFRWLA+HGLA+PT+FF+GAIT+MQFIQR
Sbjct:    3 RGTNQPVVYPIFTFRWLAVHGLAIPTVFFLGAITAMQFIQR 43
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11984.4090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7T8G5K4_SCYLO4.830e-3888.41Photosystem II reaction center protein L n=10 Tax=... [more]
A0A1L1YA62_9FLOR1.440e-2265.71Photosystem II reaction center protein L n=6 Tax=F... [more]
A0A0S0GJY0_COSCS1.750e-21100.00Cytochrome b559 subunit beta n=68 Tax=Stramenopile... [more]
A0A8K1YUB7_9FLOR3.740e-2064.18Photosystem II protein L n=2 Tax=Kumanoa TaxID=644... [more]
A0A3R5UAF7_9STRA2.580e-1887.80Cytochrome b559 subunit beta n=2 Tax=Eustigmatales... [more]
A0A1C9CCM0_9RHOD3.730e-1887.50Cytochrome b559 subunit beta n=2 Tax=Rhodophyta Ta... [more]
PSBF_NEOYE3.730e-1887.50Cytochrome b559 subunit beta n=17 Tax=Eukaryota Ta... [more]
PSBF_EMIHU5.060e-1890.00Cytochrome b559 subunit beta n=11 Tax=Eukaryota Ta... [more]
A0A0D3M5G8_9STRA5.060e-1882.93Cytochrome b559 subunit beta n=3 Tax=cellular orga... [more]
A0A3R5TZL4_9STRA5.160e-1882.93Cytochrome b559 subunit beta n=1 Tax=Characiopsis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11984contigM-pyrifera_M_contig11984:8995..9483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size489
Cds size120
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11984.4090.1prot_M-pyrifera_M_contig11984.4090.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11984 9319..9438 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.1212564-UTR-M-pyrifera_M_contig11984:8994..93181622815718.1212564-UTR-M-pyrifera_M_contig11984:8994..9318Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11984 8995..9318 +
1692277536.59995-UTR-M-pyrifera_M_contig11984:8994..93181692277536.59995-UTR-M-pyrifera_M_contig11984:8994..9318Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11984 8995..9318 +
1622815718.1486769-UTR-M-pyrifera_M_contig11984:9438..94831622815718.1486769-UTR-M-pyrifera_M_contig11984:9438..9483Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11984 9439..9483 +
1692277536.616691-UTR-M-pyrifera_M_contig11984:9438..94831692277536.616691-UTR-M-pyrifera_M_contig11984:9438..9483Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11984 9439..9483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.136005-CDS-M-pyrifera_M_contig11984:9318..94381622815718.136005-CDS-M-pyrifera_M_contig11984:9318..9438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11984 9319..9438 +
1692277536.608694-CDS-M-pyrifera_M_contig11984:9318..94381692277536.608694-CDS-M-pyrifera_M_contig11984:9318..9438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11984 9319..9438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11984.4090.1

>prot_M-pyrifera_M_contig11984.4090.1 ID=prot_M-pyrifera_M_contig11984.4090.1|Name=mRNA_M-pyrifera_M_contig11984.4090.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=40bp
MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL*
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mRNA from alignment at M-pyrifera_M_contig11984:8995..9483+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11984.4090.1 ID=mRNA_M-pyrifera_M_contig11984.4090.1|Name=mRNA_M-pyrifera_M_contig11984.4090.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig11984:8995..9483+ (Macrocystis pyrifera P11B4 male)
ACTAGAAATACAAATCAACCTGTAGCTTACCCTATTTTTACTTTTCGTTG
GCTTGCTATACATGGTTTAGCTGTTCCAACGATATTCTTTATAGGTGCAA
TTACATCAATGCAATTTATCCAACGATAGGAGTTTATTCAATGACAGGTC
CAAATCCTAATAAGCAAGAAGTTGAAATAAGTCGTACGTCTTTATACTGG
GGGTTATTATTATTTTTCATATTAGCAGTACTTTTCTCTAGTTACTTCTT
TAACTAAGGAATTTTGTAATTATTAGGTAGAATTTTTATAAGGTTAAGAA
AAGATATAGGAGCAAGAGAATATTATGGCAGGAACAGGAAGAATACCACT
TTGGTTAGTCGCATTAGTTGGTGGCCTAGGAGTTATAGTCGTTGTAGGTA
CTTTTATTTTTGGTTCTTATTCTGGGTTAGGGTCTTCACTTTAACAAGCA
ATTGCTATGGGCTTATTATTTATCTACATTGAAAAAGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11984:8995..9483+

>mRNA_M-pyrifera_M_contig11984.4090.1 ID=mRNA_M-pyrifera_M_contig11984.4090.1|Name=mRNA_M-pyrifera_M_contig11984.4090.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig11984:8995..9483+ (Macrocystis pyrifera P11B4 male)
ATGGCAGGAACAGGAAGAATACCACTTTGGTTAGTCGCATTAGTTGGTGG
CCTAGGAGTTATAGTCGTTGTAGGTACTTTTATTTTTGGTTCTTATTCTG
GGTTAGGGTCTTCACTTTAAATGGCAGGAACAGGAAGAATACCACTTTGG
TTAGTCGCATTAGTTGGTGGCCTAGGAGTTATAGTCGTTGTAGGTACTTT
TATTTTTGGTTCTTATTCTGGGTTAGGGTCTTCACTTTAA
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