mRNA_M-pyrifera_M_contig11984.4084.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11984.4084.1
Unique NamemRNA_M-pyrifera_M_contig11984.4084.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11984.4084.1 vs. uniprot
Match: A0A2Z4HGD5_9EUKA (Uncharacterized protein n=1 Tax=Cyanophora sudae TaxID=1522369 RepID=A0A2Z4HGD5_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 4.140e-22
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 1
Query:    1 YAALAIVSNCYSPPKGKFSRVTHPSATKVLTLSYDLHV*SIPPAFILSQDQTL 159
            Y  LA+VSNC  PPKG+FSRVTHPSATK+L  S+DLHV SIPPAFILSQDQTL
Sbjct:   35 YGVLAVVSNCCPPPKGRFSRVTHPSATKILRSSFDLHVLSIPPAFILSQDQTL 87          
BLAST of mRNA_M-pyrifera_M_contig11984.4084.1 vs. uniprot
Match: A0A212LM72_9HYPH (Uncharacterized protein n=1 Tax=uncultured Pleomorphomonas sp. TaxID=442121 RepID=A0A212LM72_9HYPH)

HSP 1 Score: 70.5 bits (171), Expect = 1.540e-13
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    1 YAALAIVSNCYSPPKGKFSRVTHPSATKVLTLSYDLHV*SIPPAFILSQDQTL 159
            +  LA +S  YS PKG F RVTHPSAT  L  ++DLHV S+PPAF+LSQDQTL
Sbjct:   41 HPVLAEISLSYSEPKGMFPRVTHPSATPALLRAFDLHVLSLPPAFVLSQDQTL 93          
BLAST of mRNA_M-pyrifera_M_contig11984.4084.1 vs. uniprot
Match: A0A212LKU8_9HYPH (Uncharacterized protein n=2 Tax=uncultured Pleomorphomonas sp. TaxID=442121 RepID=A0A212LKU8_9HYPH)

HSP 1 Score: 70.5 bits (171), Expect = 2.110e-13
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    1 YAALAIVSNCYSPPKGKFSRVTHPSATKVLTLSYDLHV*SIPPAFILSQDQTL 159
            +  LA +S  YS PKG F RVTHPSAT  L  ++DLHV S+PPAF+LSQDQTL
Sbjct:   41 HPVLAEISLSYSEPKGMFPRVTHPSATPALLRAFDLHVLSLPPAFVLSQDQTL 93          
BLAST of mRNA_M-pyrifera_M_contig11984.4084.1 vs. uniprot
Match: A0A7J8PTL5_GOSRA (Uncharacterized protein (Fragment) n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A7J8PTL5_GOSRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.860e-9
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    1 YAALAIVSNCYSPPKGKFSRVTHPSATKVLTLSYDLHV*SIPPAFILSQDQTL 159
            Y  LA+VSN  S PKG+F RVTHPS         DLH+ S+ P FILSQDQTL
Sbjct:   50 YEVLAVVSNYCSTPKGRFLRVTHPS---------DLHMLSMSPTFILSQDQTL 93          
BLAST of mRNA_M-pyrifera_M_contig11984.4084.1 vs. uniprot
Match: A0A0D2T5Z7_GOSRA (Uncharacterized protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2T5Z7_GOSRA)

HSP 1 Score: 57.0 bits (136), Expect = 5.220e-9
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    1 YAALAIVSNCYSPPKGKFSRVTHPSATKVLTLSYDLHV*SIPPAFILSQDQTL 159
            Y  LA+VSN  S PKG+F RVTHPS         DLH+ S+ P FILSQDQTL
Sbjct:   16 YEVLAVVSNYCSTPKGRFLRVTHPS---------DLHMLSMSPTFILSQDQTL 59          
BLAST of mRNA_M-pyrifera_M_contig11984.4084.1 vs. uniprot
Match: A0A1F7QY20_9BACT (Uncharacterized protein n=1 Tax=Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_12_FULL_42_8 TaxID=1802139 RepID=A0A1F7QY20_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 4.260e-8
Identity = 31/55 (56.36%), Postives = 34/55 (61.82%), Query Frame = 1
Query:    1 YAALAIVSNCYSPPKGKFSRVTHPSATKV--LTLSYDLHV*SIPPAFILSQDQTL 159
            YA L  VS+ Y    G+F RVT P A +V    L  DLHV   PPAFILSQDQTL
Sbjct:    5 YAVLDTVSDAYPSLWGEFPRVTQPFAARVPRRALPLDLHVLGTPPAFILSQDQTL 59          
BLAST of mRNA_M-pyrifera_M_contig11984.4084.1 vs. uniprot
Match: A0A1H9GND4_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonas ureae TaxID=44577 RepID=A0A1H9GND4_9PROT)

HSP 1 Score: 50.8 bits (120), Expect = 2.730e-7
Identity = 29/51 (56.86%), Postives = 34/51 (66.67%), Query Frame = -1
Query:   13 LILAQDERWRYALHMQVVRK--C*NF--SGGRVSNT*EFTFRRGITVGNDC 153
            +ILAQ ERWR+ALHMQV R+  C +   SGGRVSNT E   + GIT    C
Sbjct:    1 MILAQIERWRHALHMQVERQHGCLHLVASGGRVSNTSERVLKWGITHRKMC 51          
BLAST of mRNA_M-pyrifera_M_contig11984.4084.1 vs. uniprot
Match: A0A2N9CJ98_9BURK (Uncharacterized protein n=1 Tax=Burkholderia cenocepacia TaxID=95486 RepID=A0A2N9CJ98_9BURK)

HSP 1 Score: 51.6 bits (122), Expect = 5.080e-7
Identity = 29/56 (51.79%), Postives = 33/56 (58.93%), Query Frame = 3
Query:    3 CGISNRFQLLFPS*R*ILTCYSPVRH*----SFNTFVRLACVKHTASVHPEPGSNS 158
            CGI+  F  L P+   +   YSPVRH     S    VRLACV+H ASV  EPGSNS
Sbjct:   46 CGINPAFAGLSPTTGHVPMYYSPVRHSPPGASTRAAVRLACVRHAASVQSEPGSNS 101          
BLAST of mRNA_M-pyrifera_M_contig11984.4084.1 vs. uniprot
Match: A0A8D6XTT1_STRTR (Uncharacterized protein n=2 Tax=Streptococcus thermophilus TaxID=1308 RepID=A0A8D6XTT1_STRTR)

HSP 1 Score: 51.2 bits (121), Expect = 7.490e-7
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    1 YAALAIVSNCYSPPKGK----FSRVTHPSA-TKVLTLSYDLHV*SIPPAFILSQDQTL 159
            YA LAIVSN Y P +G+    +S V + S  +K+L+ ++ LHV   PPAF+LSQDQTL
Sbjct:    8 YAVLAIVSNSYPPLQGRLPTRYSPVRNSSKKSKLLSSAFYLHVLGTPPAFVLSQDQTL 65          
BLAST of mRNA_M-pyrifera_M_contig11984.4084.1 vs. uniprot
Match: A0A653VA00_9MICC (Uncharacterized protein n=1 Tax=Arthrobacter sp. 8AJ TaxID=2653130 RepID=A0A653VA00_9MICC)

HSP 1 Score: 50.4 bits (119), Expect = 1.490e-6
Identity = 23/36 (63.89%), Postives = 25/36 (69.44%), Query Frame = 3
Query:   51 ILTCYSPVRH*SFNTFVRLACVKHTASVHPEPGSNS 158
            +L   SP+ H      VRLACVKH ASVHPEPGSNS
Sbjct:   66 VLLTRSPLIHPQVGIIVRLACVKHAASVHPEPGSNS 101          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11984.4084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z4HGD5_9EUKA4.140e-2279.25Uncharacterized protein n=1 Tax=Cyanophora sudae T... [more]
A0A212LM72_9HYPH1.540e-1364.15Uncharacterized protein n=1 Tax=uncultured Pleomor... [more]
A0A212LKU8_9HYPH2.110e-1364.15Uncharacterized protein n=2 Tax=uncultured Pleomor... [more]
A0A7J8PTL5_GOSRA3.860e-958.49Uncharacterized protein (Fragment) n=1 Tax=Gossypi... [more]
A0A0D2T5Z7_GOSRA5.220e-958.49Uncharacterized protein n=1 Tax=Gossypium raimondi... [more]
A0A1F7QY20_9BACT4.260e-856.36Uncharacterized protein n=1 Tax=Candidatus Sacchar... [more]
A0A1H9GND4_9PROT2.730e-756.86Uncharacterized protein n=1 Tax=Nitrosomonas ureae... [more]
A0A2N9CJ98_9BURK5.080e-751.79Uncharacterized protein n=1 Tax=Burkholderia cenoc... [more]
A0A8D6XTT1_STRTR7.490e-751.72Uncharacterized protein n=2 Tax=Streptococcus ther... [more]
A0A653VA00_9MICC1.490e-663.89Uncharacterized protein n=1 Tax=Arthrobacter sp. 8... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11984contigM-pyrifera_M_contig11984:4248..4406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size117
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.871645-CDS-M-pyrifera_M_contig11984:4247..43641622815717.871645-CDS-M-pyrifera_M_contig11984:4247..4364Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11984 4248..4364 +
1692277536.5060434-CDS-M-pyrifera_M_contig11984:4247..43641692277536.5060434-CDS-M-pyrifera_M_contig11984:4247..4364Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11984 4248..4364 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.88191-UTR-M-pyrifera_M_contig11984:4364..44061622815717.88191-UTR-M-pyrifera_M_contig11984:4364..4406Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11984 4365..4406 +
1692277536.5143352-UTR-M-pyrifera_M_contig11984:4364..44061692277536.5143352-UTR-M-pyrifera_M_contig11984:4364..4406Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11984 4365..4406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11984.4084.1prot_M-pyrifera_M_contig11984.4084.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11984 4248..4364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11984.4084.1

>prot_M-pyrifera_M_contig11984.4084.1 ID=prot_M-pyrifera_M_contig11984.4084.1|Name=mRNA_M-pyrifera_M_contig11984.4084.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=39bp
YAALAIVSNCYSPPKGKFSRVTHPSATKVLTLSYDLHV*
back to top

mRNA from alignment at M-pyrifera_M_contig11984:4248..4406+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11984.4084.1 ID=mRNA_M-pyrifera_M_contig11984.4084.1|Name=mRNA_M-pyrifera_M_contig11984.4084.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig11984:4248..4406+ (Macrocystis pyrifera P11B4 male)
TATGCGGCATTAGCAATCGTTTCCAACTGTTATTCCCCTCCTAAAGGTAA ATTCTCACGTGTTACTCACCCGTCCGCCACTAAAGTTTTAACACTTTCGT ACGACTTGCATGTGTAAAGCATACCGCCAGCGTTCATCCTGAGCCAGGAT CAAACTCTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11984:4248..4406+

>mRNA_M-pyrifera_M_contig11984.4084.1 ID=mRNA_M-pyrifera_M_contig11984.4084.1|Name=mRNA_M-pyrifera_M_contig11984.4084.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig11984:4248..4406+ (Macrocystis pyrifera P11B4 male)
TATGCGGCATTAGCAATCGTTTCCAACTGTTATTCCCCTCCTAAAGGTAA
ATTCTCACGTGTTACTCACCCGTCCGCCACTAAAGTTTTAACACTTTCGT
ACGACTTGCATGTGTAATATGCGGCATTAGCAATCGTTTCCAACTGTTAT
TCCCCTCCTAAAGGTAAATTCTCACGTGTTACTCACCCGTCCGCCACTAA
AGTTTTAACACTTTCGTACGACTTGCATGTGTAA
back to top