mRNA_M-pyrifera_M_contig119803.4071.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119803.4071.1
Unique NamemRNA_M-pyrifera_M_contig119803.4071.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119803.4071.1 vs. uniprot
Match: A0A3D5DF37_9GAMM (Cell division protein ZapD n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DF37_9GAMM)

HSP 1 Score: 107 bits (266), Expect = 1.030e-26
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 REIRVDDGFYQQQLDPALQCQLIRLFLDDGLDVFPEIRGGKHRFVVRFFRQPATQGRPSQAREPLQFELQCCGF 222
            R I V++GF+QQQLDP ++ QLIR+ + D L VFPEI GGKHRFV+RF RQP T GRP+ ARE L F+LQCCG 
Sbjct:  198 RCIPVENGFFQQQLDPGIRYQLIRVSIADNLGVFPEISGGKHRFVIRFLRQPHTVGRPTPARESLSFDLQCCGI 271          
BLAST of mRNA_M-pyrifera_M_contig119803.4071.1 vs. uniprot
Match: A0A523PBC1_9PROT (Cell division protein ZapD n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523PBC1_9PROT)

HSP 1 Score: 103 bits (256), Expect = 3.150e-25
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 REIRVDDGFYQQQLDPALQCQLIRLFLDDGLDVFPEIRGGKHRFVVRFFRQPATQGRPSQAREPLQFELQCCGF 222
            +++ V+DG +Q+Q+DPA+ CQLIRL + D L VFPEI GGKHRFV+RF RQP T  RP+  RE + F LQCCG 
Sbjct:  198 QQVSVEDGLFQRQIDPAMPCQLIRLHVADKLAVFPEISGGKHRFVIRFSRQPNTTNRPTLTRESISFGLQCCGI 271          
BLAST of mRNA_M-pyrifera_M_contig119803.4071.1 vs. uniprot
Match: A0A661CE38_9GAMM (Cell division protein ZapD n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661CE38_9GAMM)

HSP 1 Score: 87.4 bits (215), Expect = 2.950e-19
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 1
Query:   16 DDGFYQQQLDPALQCQLIRLFLDDGLDVFPEIRGGKHRFVVRFFRQPATQGRPSQAREPLQFELQCC 216
            + GFYQQ ++  L CQLIR+FL D  + FPEI GGKHRF +RF  Q +T  RP Q  + ++FEL CC
Sbjct:  192 ESGFYQQPIESKLPCQLIRVFLPDDCNYFPEISGGKHRFTIRFMEQSSTSSRPVQTDDAVEFELHCC 258          
BLAST of mRNA_M-pyrifera_M_contig119803.4071.1 vs. uniprot
Match: A0A4R2L810_9GAMM (Cell division protein ZapD n=1 Tax=Plasticicumulans lactativorans TaxID=1133106 RepID=A0A4R2L810_9GAMM)

HSP 1 Score: 77.4 bits (189), Expect = 1.640e-15
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   22 GFYQQQLDPALQCQLIRLFLDDGLDVFPEIRGGKHRFVVRFFRQPATQGRPSQAREPLQFELQCC 216
            GFYQQ LD +   QL+R+ L   +DVFPEI GG+HRF +RF RQP    RP Q  + + F L CC
Sbjct:  184 GFYQQSLDASAPSQLVRVALPGAVDVFPEISGGRHRFSIRFMRQPNPAQRPFQTDDDVGFALACC 248          
BLAST of mRNA_M-pyrifera_M_contig119803.4071.1 vs. uniprot
Match: UPI0013EA0BFF (cell division protein ZapD n=2 Tax=unclassified Thioalkalivibrio TaxID=2621013 RepID=UPI0013EA0BFF)

HSP 1 Score: 71.6 bits (174), Expect = 3.050e-13
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   22 GFYQQQLDPALQCQLIRLFLDDGLDVFPEIRGGKHRFVVRFFRQPATQGRPSQAREPLQFELQCC 216
            G +Q Q+D ++ CQL+R+ L  G++ +PEI GG+HRF VRF      + RP Q +  + FEL CC
Sbjct:  203 GMFQYQIDRSIGCQLVRISLPAGVEYYPEISGGQHRFTVRFLTWSGPEQRPVQVQGDVHFELTCC 267          
BLAST of mRNA_M-pyrifera_M_contig119803.4071.1 vs. uniprot
Match: A0A2G6PG19_9GAMM (Cell division protein ZapD n=1 Tax=Candidatus Contendobacter odensis TaxID=1400860 RepID=A0A2G6PG19_9GAMM)

HSP 1 Score: 70.9 bits (172), Expect = 5.970e-13
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   22 GFYQQQLDPALQCQLIRLFLDDGLDVFPEIRGGKHRFVVRFFRQPATQGRPSQAREPLQFELQCCGF 222
            GF+QQ LD +   QLIR+ L     VFPEI GGKHRF +RF +QP    R +Q+   + F+L CC  
Sbjct:  202 GFFQQSLDLSAPNQLIRVLLSRQDTVFPEISGGKHRFTIRFLKQPDPNQRATQSETDVAFKLACCAI 268          
BLAST of mRNA_M-pyrifera_M_contig119803.4071.1 vs. uniprot
Match: A0A3N1XXP8_9GAMM (Cell division protein ZapD n=1 Tax=Inmirania thermothiophila TaxID=1750597 RepID=A0A3N1XXP8_9GAMM)

HSP 1 Score: 70.5 bits (171), Expect = 7.050e-13
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   19 DGFYQQQLDPALQCQLIRLFLDDGLDVFPEIRGGKHRFVVRFFRQPATQGRPSQAREPLQFELQCC 216
            +GFYQ+ LD A  C+L+R+ L   L ++PEI  G+HRF +RF  +PA++GRP Q    + F L  C
Sbjct:  187 EGFYQEYLDSATPCRLLRVILPADLALYPEISAGRHRFTIRFM-EPASEGRPQQTEREVAFRLARC 251          
BLAST of mRNA_M-pyrifera_M_contig119803.4071.1 vs. uniprot
Match: A0A7C1A2W9_9GAMM (Cell division protein ZapD n=2 Tax=Bacteria TaxID=2 RepID=A0A7C1A2W9_9GAMM)

HSP 1 Score: 70.5 bits (171), Expect = 7.810e-13
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 1
Query:   22 GFYQQQLDPALQCQLIRLFLDDGLDVFPEIRGGKHRFVVRFFRQPATQGRPSQAREPLQFELQCC 216
            GF QQ LDP+L  Q++R+ L DG   FPEI  G+HR+ +RF  Q + + R   A   + FEL CC
Sbjct:  196 GFLQQNLDPSLPYQMMRVALPDGAACFPEISAGRHRYTIRFLEQASPEARAVPADRDVHFELACC 260          
BLAST of mRNA_M-pyrifera_M_contig119803.4071.1 vs. uniprot
Match: D0KYI5_HALNC (Cell division protein ZapD n=6 Tax=Halothiobacillus TaxID=109262 RepID=D0KYI5_HALNC)

HSP 1 Score: 68.9 bits (167), Expect = 3.370e-12
Identity = 33/72 (45.83%), Postives = 42/72 (58.33%), Query Frame = 1
Query:    4 EIRV-DDGFYQQQLDPALQCQLIRLFLDDGLDVFPEIRGGKHRFVVRFFRQPATQGRPSQAREPLQFELQCC 216
            EIR  +DGF+Q  L+     QL+R+ LDDG +V+PEI   KHR +VRF R     G P Q    + FEL  C
Sbjct:  203 EIRTAEDGFFQLNLELGTPYQLVRVLLDDGSNVYPEISASKHRVIVRFMRLDRQTGHPFQVNHDVAFELAIC 274          
BLAST of mRNA_M-pyrifera_M_contig119803.4071.1 vs. uniprot
Match: A0A1A6C3C3_9GAMM (Cell division protein ZapD n=1 Tax=Acidihalobacter prosperus TaxID=160660 RepID=A0A1A6C3C3_9GAMM)

HSP 1 Score: 68.2 bits (165), Expect = 5.350e-12
Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 1
Query:   10 RVDDGFYQQQLDPALQCQLIRLFLDDGLDVFPEIRGGKHRFVVRFFRQPATQGRPSQAREPLQFELQCCGF 222
            R   GF+QQ L+     Q++R+ ++  L V+PEI  GKHRF +RF RQP    R SQ  E + FEL  C  
Sbjct:  186 RASQGFFQQTLNLETPTQILRVRVEASLPVYPEISAGKHRFSIRFLRQPDIAERASQTDEDVSFELATCAL 256          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119803.4071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DF37_9GAMM1.030e-2664.86Cell division protein ZapD n=1 Tax=Gammaproteobact... [more]
A0A523PBC1_9PROT3.150e-2559.46Cell division protein ZapD n=1 Tax=Proteobacteria ... [more]
A0A661CE38_9GAMM2.950e-1953.73Cell division protein ZapD n=1 Tax=Gammaproteobact... [more]
A0A4R2L810_9GAMM1.640e-1552.31Cell division protein ZapD n=1 Tax=Plasticicumulan... [more]
UPI0013EA0BFF3.050e-1344.62cell division protein ZapD n=2 Tax=unclassified Th... [more]
A0A2G6PG19_9GAMM5.970e-1347.76Cell division protein ZapD n=1 Tax=Candidatus Cont... [more]
A0A3N1XXP8_9GAMM7.050e-1345.45Cell division protein ZapD n=1 Tax=Inmirania therm... [more]
A0A7C1A2W9_9GAMM7.810e-1346.15Cell division protein ZapD n=2 Tax=Bacteria TaxID=... [more]
D0KYI5_HALNC3.370e-1245.83Cell division protein ZapD n=6 Tax=Halothiobacillu... [more]
A0A1A6C3C3_9GAMM5.350e-1243.66Cell division protein ZapD n=1 Tax=Acidihalobacter... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119803contigM-pyrifera_M_contig119803:310..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score72.8
Seed ortholog evalue7.7e-11
Seed eggNOG ortholog1249627.D779_1249
Preferred namezapD
KEGG koko:K18778
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0007049,GO:0008150,GO:0009987,GO:0019954,GO:0022402,GO:0022414,GO:0032153,GO:0032505,GO:0042802,GO:0043093,GO:0044424,GO:0044444,GO:0044464,GO:0051301
EggNOG free text desc.Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
EggNOG OGs1MW69@1224,1RNPD@1236,1WWH6@135613,COG4582@1,COG4582@2
COG Functional cat.D
Best tax levelChromatiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.220442-CDS-M-pyrifera_M_contig119803:309..5341622815717.220442-CDS-M-pyrifera_M_contig119803:309..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119803 310..534 -
1692277536.2097492-CDS-M-pyrifera_M_contig119803:309..5341692277536.2097492-CDS-M-pyrifera_M_contig119803:309..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119803 310..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119803.4071.1prot_M-pyrifera_M_contig119803.4071.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119803 310..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119803.4071.1

>prot_M-pyrifera_M_contig119803.4071.1 ID=prot_M-pyrifera_M_contig119803.4071.1|Name=mRNA_M-pyrifera_M_contig119803.4071.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
REIRVDDGFYQQQLDPALQCQLIRLFLDDGLDVFPEIRGGKHRFVVRFFR
QPATQGRPSQAREPLQFELQCCGF*
back to top

mRNA from alignment at M-pyrifera_M_contig119803:310..534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119803.4071.1 ID=mRNA_M-pyrifera_M_contig119803.4071.1|Name=mRNA_M-pyrifera_M_contig119803.4071.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig119803:310..534- (Macrocystis pyrifera P11B4 male)
CGCGAAATACGTGTCGACGACGGCTTTTATCAACAACAGCTCGATCCGGC GCTGCAGTGCCAGCTGATCCGCCTGTTTCTCGATGACGGGCTCGATGTGT TTCCCGAGATCCGCGGGGGCAAACACCGTTTCGTCGTGCGCTTTTTCCGC CAGCCGGCGACCCAGGGGCGGCCGAGCCAGGCACGTGAACCGCTGCAGTT CGAACTGCAGTGCTGCGGATTCTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig119803:310..534-

>mRNA_M-pyrifera_M_contig119803.4071.1 ID=mRNA_M-pyrifera_M_contig119803.4071.1|Name=mRNA_M-pyrifera_M_contig119803.4071.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig119803:310..534- (Macrocystis pyrifera P11B4 male)
CGCGAAATACGTGTCGACGACGGCTTTTATCAACAACAGCTCGATCCGGC
GCTGCAGTGCCAGCTGATCCGCCTGTTTCTCGATGACGGGCTCGATGTGT
TTCCCGAGATCCGCGGGGGCAAACACCGTTTCGTCGTGCGCTTTTTCCGC
CAGCCGGCGACCCAGGGGCGGCCGAGCCAGGCACGTGAACCGCTGCAGTT
CGAACTGCAGTGCTGCGGATTCTAGCGCGAAATACGTGTCGACGACGGCT
TTTATCAACAACAGCTCGATCCGGCGCTGCAGTGCCAGCTGATCCGCCTG
TTTCTCGATGACGGGCTCGATGTGTTTCCCGAGATCCGCGGGGGCAAACA
CCGTTTCGTCGTGCGCTTTTTCCGCCAGCCGGCGACCCAGGGGCGGCCGA
GCCAGGCACGTGAACCGCTGCAGTTCGAACTGCAGTGCTGCGGATTCTAG
back to top