mRNA_M-pyrifera_M_contig1198.4069.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1198.4069.1
Unique NamemRNA_M-pyrifera_M_contig1198.4069.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1198.4069.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.200e-17
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:    4 IMSLLAELLS-NQHVLFAGVSKEWRNVWGERPKITQAITADTSVSQLRWSFDSGLKKGTVICESIAEHCGVEW---AHAHDCPWDASTC 258
            ++S LAE +  NQH+ FA VS+ WR+VWG+RP +T+A+TADTSV QL  SF+ GL++   +CE++A    ++    A A  CPW+ +TC
Sbjct:   27 LLSYLAEFVDDNQHLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLQRARAMGCPWNENTC 115
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BLAST of mRNA_M-pyrifera_M_contig1198.4069.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 5.630e-17
Identity = 42/90 (46.67%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:    1 DIMSLLAELLS-NQHVLFAGVSKEWRNVWGERPKITQAITADTSVSQLRWSFDSGLKKGTVICESIAEHCGVEW---AHAHDCPWDASTC 258
            DI+S + E +  NQ++ FA VS+ WR+VWG+RP +T+A+TADTSVSQL  SF+ GL++   +CE++A    ++    A A  CPW+ +TC
Sbjct:   10 DIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCPWNENTC 99
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BLAST of mRNA_M-pyrifera_M_contig1198.4069.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.680e-16
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:    1 DIMSLLAELLS-NQHVLFAGVSKEWRNVWGERPKITQAITADTSVSQLRWSFDSGLKKGTVICESIAEHCGVEW---AHAHDCPWDASTC 258
            DI+S +AE +  NQ++ FA VS+ WR+VWG+RP +T+A+TADTSV QL  SF+ GL++   +CE++A    ++    A A  C W+ +TC
Sbjct:    8 DIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCQWNENTC 97
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BLAST of mRNA_M-pyrifera_M_contig1198.4069.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.010e-9
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:    4 IMSLLAELLSNQHVLFAGVSKEWRNVWGERPKITQAITADTSVSQLRWSFDSGLKKGTV-ICESIAEHCGVEW---AHAHDCPWDASTCSEAA 270
            + S++  +   Q + FA VS+ WR  WG RP +T  +T D+SVSQLR+SF+ GL +    +C +IA    +E    A    C W+  T SEAA
Sbjct:   64 LRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCAWNGLTFSEAA 156
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BLAST of mRNA_M-pyrifera_M_contig1198.4069.1 vs. uniprot
Match: D8LGC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC4_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 4.390e-7
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   16 LAELLSN-QHVLFAGVSKEWRNVWGERPKITQAITADTSVSQLRWSFDSGLKK 171
            +AE + + Q++ FA VS++WR+ WG RP +T   T  TS+SQLRWS D GLKK
Sbjct:    1 MAEFVGDKQYLFFAPVSQDWRSAWGGRPTVTSYATPYTSLSQLRWSLDCGLKK 53
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1198.4069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L0K8_9PHAE2.200e-1747.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS7_ECTSI5.630e-1746.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0J7_9PHAE1.680e-1645.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPZ6_9PHAE1.010e-939.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LGC4_ECTSI4.390e-752.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1198contigM-pyrifera_M_contig1198:15268..16242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size804
Cds size798
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1198.4069.1prot_M-pyrifera_M_contig1198.4069.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1198 15274..16242 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.0877345-UTR-M-pyrifera_M_contig1198:15267..152731622815717.0877345-UTR-M-pyrifera_M_contig1198:15267..15273Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1198 15268..15273 +
1692277536.1493587-UTR-M-pyrifera_M_contig1198:15267..152731692277536.1493587-UTR-M-pyrifera_M_contig1198:15267..15273Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1198 15268..15273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.0987432-CDS-M-pyrifera_M_contig1198:15273..154831622815717.0987432-CDS-M-pyrifera_M_contig1198:15273..15483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1198 15274..15483 +
1692277536.1577723-CDS-M-pyrifera_M_contig1198:15273..154831692277536.1577723-CDS-M-pyrifera_M_contig1198:15273..15483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1198 15274..15483 +
1622815717.109489-CDS-M-pyrifera_M_contig1198:15654..162421622815717.109489-CDS-M-pyrifera_M_contig1198:15654..16242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1198 15655..16242 +
1692277536.167566-CDS-M-pyrifera_M_contig1198:15654..162421692277536.167566-CDS-M-pyrifera_M_contig1198:15654..16242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1198 15655..16242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1198.4069.1

>prot_M-pyrifera_M_contig1198.4069.1 ID=prot_M-pyrifera_M_contig1198.4069.1|Name=mRNA_M-pyrifera_M_contig1198.4069.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=266bp
MSLLAELLSNQHVLFAGVSKEWRNVWGERPKITQAITADTSVSQLRWSFD
SGLKKGTVICESIAEHCGVEWAHAHDCPWDASTCSEAAGSGRQDILQWAR
SENCPWNSETCSRAAKGGHLDILQWARAHGCPWDSTTCSEAAGAGYLDVL
WRARYENCPWDTRTCSKAAEGGHLEILRWARTYGCPWDHRTCSGAAAGGH
LRVLQWARANGAIWGEDTTYWAAQGGHLELLQWARAESCPWDPRALLIAI
RRGHLETMEWMLANGC
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mRNA from alignment at M-pyrifera_M_contig1198:15268..16242+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1198.4069.1 ID=mRNA_M-pyrifera_M_contig1198.4069.1|Name=mRNA_M-pyrifera_M_contig1198.4069.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=975bp|location=Sequence derived from alignment at M-pyrifera_M_contig1198:15268..16242+ (Macrocystis pyrifera P11B4 male)
GACATCATGAGCTTGCTGGCGGAACTACTGAGCAACCAACATGTCCTGTT
CGCCGGGGTGTCCAAGGAGTGGAGAAACGTTTGGGGAGAGCGTCCAAAAA
TCACGCAAGCGATAACCGCCGACACCTCTGTATCGCAGCTGCGGTGGAGC
TTCGACAGCGGCCTGAAAAAGGGAACGGTTATATGCGAAAGCATCGCCGA
GCATTGCGGTGTTGAAGTTTTGAAGTTTGCACACGCGAACGGATGCGCTT
TGTCCGAAAAGGCTTGCTTCAAGGCTGCCGCCCGGGGTCAGCTCGAAATG
ATCCAATGGGCACTCGATAAGAAATGTGATTGGCGCGAAGTGCTCTGCAG
GGCGGCCACGACCGGTGGCAACCTGCGCATCCTGAAGTGGGCCCACGCTC
ACGATTGCCCGTGGGACGCCTCTACTTGCAGCGAGGCCGCCGGTTCAGGG
CGTCAAGATATCCTGCAGTGGGCACGTTCCGAAAACTGTCCTTGGAATAG
CGAGACGTGCTCGAGGGCGGCCAAGGGGGGACACCTCGATATTCTCCAGT
GGGCCCGAGCTCACGGCTGCCCCTGGGACAGCACTACTTGCAGCGAAGCC
GCCGGCGCAGGTTATCTCGATGTTCTGTGGCGGGCTCGTTACGAAAACTG
TCCTTGGGATACCCGAACGTGCTCTAAGGCTGCTGAGGGCGGTCACCTCG
AGATTCTACGGTGGGCACGGACTTACGGCTGCCCTTGGGATCATCGAACG
TGCTCCGGTGCAGCCGCTGGCGGGCACTTGAGGGTCCTTCAATGGGCGAG
GGCAAACGGTGCCATTTGGGGGGAAGACACGACGTATTGGGCTGCCCAGG
GGGGGCATCTAGAGCTGCTGCAGTGGGCGAGGGCAGAAAGCTGTCCCTGG
GACCCGCGGGCGCTATTGATCGCCATTCGACGTGGCCACCTGGAAACGAT
GGAGTGGATGCTGGCGAACGGATGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1198:15268..16242+

>mRNA_M-pyrifera_M_contig1198.4069.1 ID=mRNA_M-pyrifera_M_contig1198.4069.1|Name=mRNA_M-pyrifera_M_contig1198.4069.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1596bp|location=Sequence derived from alignment at M-pyrifera_M_contig1198:15268..16242+ (Macrocystis pyrifera P11B4 male)
ATGAGCTTGCTGGCGGAACTACTGAGCAACCAACATGTCCTGTTCGCCGG
GGTGTCCAAGGAGTGGAGAAACGTTTGGGGAGAGCGTCCAAAAATCACGC
AAGCGATAACCGCCGACACCTCTGTATCGCAGCTGCGGTGGAGCTTCGAC
AGCGGCCTGAAAAAGGGAACGGTTATATGCGAAAGCATCGCCGAGCATTG
CGGTGTTGAAATGAGCTTGCTGGCGGAACTACTGAGCAACCAACATGTCC
TGTTCGCCGGGGTGTCCAAGGAGTGGAGAAACGTTTGGGGAGAGCGTCCA
AAAATCACGCAAGCGATAACCGCCGACACCTCTGTATCGCAGCTGCGGTG
GAGCTTCGACAGCGGCCTGAAAAAGGGAACGGTTATATGCGAAAGCATCG
CCGAGCATTGCGGTGTTGAATGGGCCCACGCTCACGATTGCCCGTGGGAC
GCCTCTACTTGCAGCGAGGCCGCCGGTTCAGGGCGTCAAGATATCCTGCA
GTGGGCACGTTCCGAAAACTGTCCTTGGAATAGCGAGACGTGCTCGAGGG
CGGCCAAGGGGGGACACCTCGATATTCTCCAGTGGGCCCGAGCTCACGGC
TGCCCCTGGGACAGCACTACTTGCAGCGAAGCCGCCGGCGCAGGTTATCT
CGATGTTCTGTGGCGGGCTCGTTACGAAAACTGTCCTTGGGATACCCGAA
CGTGCTCTAAGGCTGCTGAGGGCGGTCACCTCGAGATTCTACGGTGGGCA
CGGACTTACGGCTGCCCTTGGGATCATCGAACGTGCTCCGGTGCAGCCGC
TGGCGGGCACTTGAGGGTCCTTCAATGGGCGAGGGCAAACGGTGCCATTT
GGGGGGAAGACACGACGTATTGGGCTGCCCAGGGGGGGCATCTAGAGCTG
CTGCAGTGGGCGAGGGCAGAAAGCTGTCCCTGGGACCCGCGGGCGCTATT
GATCGCCATTCGACGTGGCCACCTGGAAACGATGGAGTGGATGCTGGCGA
ACGGATGTTGGGCCCACGCTCACGATTGCCCGTGGGACGCCTCTACTTGC
AGCGAGGCCGCCGGTTCAGGGCGTCAAGATATCCTGCAGTGGGCACGTTC
CGAAAACTGTCCTTGGAATAGCGAGACGTGCTCGAGGGCGGCCAAGGGGG
GACACCTCGATATTCTCCAGTGGGCCCGAGCTCACGGCTGCCCCTGGGAC
AGCACTACTTGCAGCGAAGCCGCCGGCGCAGGTTATCTCGATGTTCTGTG
GCGGGCTCGTTACGAAAACTGTCCTTGGGATACCCGAACGTGCTCTAAGG
CTGCTGAGGGCGGTCACCTCGAGATTCTACGGTGGGCACGGACTTACGGC
TGCCCTTGGGATCATCGAACGTGCTCCGGTGCAGCCGCTGGCGGGCACTT
GAGGGTCCTTCAATGGGCGAGGGCAAACGGTGCCATTTGGGGGGAAGACA
CGACGTATTGGGCTGCCCAGGGGGGGCATCTAGAGCTGCTGCAGTGGGCG
AGGGCAGAAAGCTGTCCCTGGGACCCGCGGGCGCTATTGATCGCCATTCG
ACGTGGCCACCTGGAAACGATGGAGTGGATGCTGGCGAACGGATGT
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