mRNA_M-pyrifera_M_contig119710.4062.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119710.4062.1
Unique NamemRNA_M-pyrifera_M_contig119710.4062.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119710.4062.1 vs. uniprot
Match: A0A6L4ZRY6_9BACT (Ankyrin n=1 Tax=bacterium TaxID=1869227 RepID=A0A6L4ZRY6_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.120e-6
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:   16 LHAASISGDAKLVEALLEAGSDPNAKTNTGYTPLVFAASRGNSDVCALLL 165
            L  A+  GD KL +  L AG++PNAK +TGYTPL+FAA    SD+  +L+
Sbjct:   45 LFDAAYLGDVKLAKEALAAGANPNAKNDTGYTPLIFAADSNQSDIIKILI 94          
BLAST of mRNA_M-pyrifera_M_contig119710.4062.1 vs. uniprot
Match: A0A1J4JQR7_9EUKA (26S proteasome non-ATPase regulatory subunit 10 n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4JQR7_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 2.800e-6
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 1
Query:   16 LHAASISGDAKLVEALLEAGSDPNAKTNTGYTPLVFAASRGNSDVCALLLRFGA 177
            LH A ++GD  LV  L+++G DPN    +G+TPL+ AAS G + +C  LL+ GA
Sbjct:   10 LHWAVMNGDLPLVNKLIQSGDDPNTSDESGWTPLMSAASAGFAQICDSLLQAGA 63          
BLAST of mRNA_M-pyrifera_M_contig119710.4062.1 vs. uniprot
Match: A0A3D8R4B6_9EURO (Uncharacterized protein n=1 Tax=Aspergillus mulundensis TaxID=1810919 RepID=A0A3D8R4B6_9EURO)

HSP 1 Score: 53.5 bits (127), Expect = 4.400e-6
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    4 GLNLLHAASISGDAKLVEALLEAGSDPNAKTNTGYTPLVFAASRGNSDVCALLLRFGASPFLAD 195
            G N    A++ G   +VEAL+EAG DP+   ++G TPL FAA RG+ +   LLL +G    L D
Sbjct:   79 GWNATILAAVGGKTDIVEALVEAGGDPDFLDHSGRTPLSFAAERGHVETVQLLLGYGVEVALRD 142          
BLAST of mRNA_M-pyrifera_M_contig119710.4062.1 vs. uniprot
Match: F2UMR1_SALR5 (3'-5' exonuclease domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UMR1_SALR5)

HSP 1 Score: 53.5 bits (127), Expect = 4.870e-6
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 1
Query:    1 NGLNLLHAASISGDAKLVEALLEAGSDPNAKTNTGYTPLVFAASRGNSDVCALLLRFG 174
            N   L+ A+ +     LV  LLE G++PNA TN G+TP+VFAA +G  +   +L  FG
Sbjct:   72 NKTALMFASQLKNGHDLVRFLLERGAEPNASTNRGHTPVVFAAGKGREETLRVLFEFG 129          
BLAST of mRNA_M-pyrifera_M_contig119710.4062.1 vs. uniprot
Match: A0A811LM23_9BILA (Hypothetical protein n=1 Tax=Bursaphelenchus okinawaensis TaxID=465554 RepID=A0A811LM23_9BILA)

HSP 1 Score: 53.1 bits (126), Expect = 6.110e-6
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    1 NGLNLLHAASISGDAKLVEALLEAGSD-PNAKTNTGYTPLVFAASRGNSDVCALLLRFGA 177
            +G+NLL   S  GD   V+ L++ G++  N   N G+T L+FAA RGN D+C LLL  GA
Sbjct:   46 SGMNLLDQGSHKGDVNFVQKLIDRGANVDNRAQNDGFTCLMFAALRGNPDLCDLLLTHGA 105          
BLAST of mRNA_M-pyrifera_M_contig119710.4062.1 vs. uniprot
Match: A0A7S1CQV8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQV8_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 6.510e-6
Identity = 37/84 (44.05%), Postives = 44/84 (52.38%), Query Frame = 1
Query:    4 GLNLLHAASISGDAKLVEALLEAGSDPNAKTN-TGYTPLVFAASRGNSDVCALLLRFG--ASPFLAD--GMIPPHATTATSSTT 240
            G N LH A  +G   +V+ALLEAG+DPN +T   G TPL+ A   G   V   LLR    ASP   D  G  P HA    S+ T
Sbjct:   62 GFNALHVACSNGRLSMVQALLEAGADPNCRTRINGETPLILAVQCGKDRVVECLLRADPPASPLKPDFLGGTPLHAAALRSNAT 145          
BLAST of mRNA_M-pyrifera_M_contig119710.4062.1 vs. uniprot
Match: UPI00053CA6C9 (ADP-ribosylation factor GTPase-activating protein AGD4 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053CA6C9)

HSP 1 Score: 52.4 bits (124), Expect = 1.220e-5
Identity = 28/65 (43.08%), Postives = 37/65 (56.92%), Query Frame = 1
Query:    4 GLNLLHAASISGDAKLVEALLEAGSDPNAKTNTGYTPLVFAASRGNSDVCALLLRFGASPFLADG 198
            G  LLH A  SGDA ++E LL+ G+D N +   G TPL    + GN+    +LLR G  P + DG
Sbjct:  688 GCTLLHVACHSGDAVMLELLLQFGADLNMRDFHGRTPLHHCIASGNNTFAKILLRRGGRPSIEDG 752          
BLAST of mRNA_M-pyrifera_M_contig119710.4062.1 vs. uniprot
Match: A0A7J7PLP0_9CHLO (Nucleotide-diphospho-sugar transferase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PLP0_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 5.810e-5
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 1
Query:    4 GLNLLHAASISGDAKLVEALLEAGSDPNAKTNTGY--TPLVFAASRGNSDVCALLLRFGASPFLADGMIPPHATTATSSTTPSQLANQSGHAAL 279
            G   LHAA++ G A     L +AG+D  A  + G+  T L +AA+RG+++VC +LL FGA          P      +  TP+++A +SGH+ L
Sbjct:  268 GFTALHAAAVEGQALAALWLCQAGADVTALKDDGWQDTALHYAAARGHTEVCKVLLAFGA----------PVEAKNYAGLTPAKIAARSGHSRL 351          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119710.4062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6L4ZRY6_9BACT1.120e-650.00Ankyrin n=1 Tax=bacterium TaxID=1869227 RepID=A0A6... [more]
A0A1J4JQR7_9EUKA2.800e-646.3026S proteasome non-ATPase regulatory subunit 10 n=... [more]
A0A3D8R4B6_9EURO4.400e-643.75Uncharacterized protein n=1 Tax=Aspergillus mulund... [more]
F2UMR1_SALR54.870e-643.103'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A811LM23_9BILA6.110e-646.67Hypothetical protein n=1 Tax=Bursaphelenchus okina... [more]
A0A7S1CQV8_9STRA6.510e-644.05Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
UPI00053CA6C91.220e-543.08ADP-ribosylation factor GTPase-activating protein ... [more]
A0A7J7PLP0_9CHLO5.810e-536.17Nucleotide-diphospho-sugar transferase n=1 Tax=Sce... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119710contigM-pyrifera_M_contig119710:2..307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815716.7749903-CDS-M-pyrifera_M_contig119710:1..3071622815716.7749903-CDS-M-pyrifera_M_contig119710:1..307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119710 2..307 +
1692277536.0391362-CDS-M-pyrifera_M_contig119710:1..3071692277536.0391362-CDS-M-pyrifera_M_contig119710:1..307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119710 2..307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119710.4062.1prot_M-pyrifera_M_contig119710.4062.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119710 2..307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119710.4062.1

>prot_M-pyrifera_M_contig119710.4062.1 ID=prot_M-pyrifera_M_contig119710.4062.1|Name=mRNA_M-pyrifera_M_contig119710.4062.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
NGLNLLHAASISGDAKLVEALLEAGSDPNAKTNTGYTPLVFAASRGNSDV
CALLLRFGASPFLADGMIPPHATTATSSTTPSQLANQSGHAALAAELRRA
EQ
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mRNA from alignment at M-pyrifera_M_contig119710:2..307+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119710.4062.1 ID=mRNA_M-pyrifera_M_contig119710.4062.1|Name=mRNA_M-pyrifera_M_contig119710.4062.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig119710:2..307+ (Macrocystis pyrifera P11B4 male)
AATGGATTAAACCTATTGCATGCTGCTTCTATCTCAGGAGATGCGAAACT TGTAGAAGCATTATTGGAAGCAGGAAGTGATCCAAATGCAAAGACAAACA CAGGATATACTCCTCTTGTCTTTGCAGCTTCCCGTGGAAATTCAGATGTT TGTGCTTTACTTCTTCGTTTTGGTGCTTCTCCATTCCTAGCTGATGGAAT GATTCCTCCTCATGCTACCACTGCCACATCATCCACCACACCATCACAAC TTGCAAATCAATCTGGCCATGCAGCACTCGCAGCAGAACTCCGTCGCGCA GAGCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119710:2..307+

>mRNA_M-pyrifera_M_contig119710.4062.1 ID=mRNA_M-pyrifera_M_contig119710.4062.1|Name=mRNA_M-pyrifera_M_contig119710.4062.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig119710:2..307+ (Macrocystis pyrifera P11B4 male)
AATGGATTAAACCTATTGCATGCTGCTTCTATCTCAGGAGATGCGAAACT
TGTAGAAGCATTATTGGAAGCAGGAAGTGATCCAAATGCAAAGACAAACA
CAGGATATACTCCTCTTGTCTTTGCAGCTTCCCGTGGAAATTCAGATGTT
TGTGCTTTACTTCTTCGTTTTGGTGCTTCTCCATTCCTAGCTGATGGAAT
GATTCCTCCTCATGCTACCACTGCCACATCATCCACCACACCATCACAAC
TTGCAAATCAATCTGGCCATGCAGCACTCGCAGCAGAACTCCGTCGCGCA
GAGCAAAATGGATTAAACCTATTGCATGCTGCTTCTATCTCAGGAGATGC
GAAACTTGTAGAAGCATTATTGGAAGCAGGAAGTGATCCAAATGCAAAGA
CAAACACAGGATATACTCCTCTTGTCTTTGCAGCTTCCCGTGGAAATTCA
GATGTTTGTGCTTTACTTCTTCGTTTTGGTGCTTCTCCATTCCTAGCTGA
TGGAATGATTCCTCCTCATGCTACCACTGCCACATCATCCACCACACCAT
CACAACTTGCAAATCAATCTGGCCATGCAGCACTCGCAGCAGAACTCCGT
CGCGCAGAGCAA
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