mRNA_M-pyrifera_M_contig119673.4055.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119673.4055.1
Unique NamemRNA_M-pyrifera_M_contig119673.4055.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119673.4055.1 vs. uniprot
Match: A0A5A8C9G6_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C9G6_CAFRO)

HSP 1 Score: 111 bits (277), Expect = 1.080e-26
Identity = 54/100 (54.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:    1 RKGMVEAVDSYSGFGDATETKELEETPLRALLTERGVKNVFVAGLAADYCVAFTAKDALRFGFNTWLITDATKEIDRAVRDKEWATCSELGGKFIKAEHV 300
            RKG V  VDSYSGFGDATE K  E TPLRALL  RG++ V V GLA D+CVAFTA+D+ RFGF T+++ D T+ I     DKE   C   G + +++  V
Sbjct:  262 RKGTVRGVDSYSGFGDATEDKRQELTPLRALLAARGIEVVVVVGLALDFCVAFTARDSQRFGFETYMVLDGTRGITSEGVDKELELCEGAGVRLVRSSQV 361
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BLAST of mRNA_M-pyrifera_M_contig119673.4055.1 vs. uniprot
Match: L8JI00_9BACT (Nicotinamidase n=1 Tax=Fulvivirga imtechensis AK7 TaxID=1237149 RepID=L8JI00_9BACT)

HSP 1 Score: 92.8 bits (229), Expect = 1.970e-21
Identity = 53/97 (54.64%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 RKGMVEAVDSYSGFGDATETKELEETPLRALLTERGVKNVFVAGLAADYCVAFTAKDALRFGFNTWLITDATKEIDRAVRDKEWATCSELGGKFIKA 291
            RKGM   +DSYSGF D    K    T L   L ER VK+V+V GLAADYCV FTAKDAL   F+T+LI DATK ID A  +K  A    LGG+ +K+
Sbjct:  105 RKGMDREIDSYSGFYDNGHKKS---TGLAGYLRERNVKSVYVCGLAADYCVFFTAKDALLEKFDTYLIEDATKPIDPAGFEKAKAELVALGGRVVKS 198
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BLAST of mRNA_M-pyrifera_M_contig119673.4055.1 vs. uniprot
Match: UPI00192E1305 (bifunctional nicotinamidase/pyrazinamidase n=1 Tax=Fulvivirga marina TaxID=2494733 RepID=UPI00192E1305)

HSP 1 Score: 91.3 bits (225), Expect = 8.940e-21
Identity = 51/100 (51.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:    1 RKGMVEAVDSYSGFGDATETKELEETPLRALLTERGVKNVFVAGLAADYCVAFTAKDALRFGFNTWLITDATKEIDRAVRDKEWATCSELGGKFIKAEHV 300
            RKGM   +DSYSGF D    K    T L   L ER VKNV++ GLAAD+CV +TAKDALR GF T++I DAT+ ID+    K       LGGK IK++ +
Sbjct:  105 RKGMNPEIDSYSGFYDNGHKKS---TGLSGYLKERKVKNVYICGLAADFCVFYTAKDALREGFGTYVIEDATRAIDQNGFLKAKYEIKALGGKTIKSKDI 201
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BLAST of mRNA_M-pyrifera_M_contig119673.4055.1 vs. uniprot
Match: UPI00104C2F20 (bifunctional nicotinamidase/pyrazinamidase n=2 Tax=Chitinophagaceae TaxID=563835 RepID=UPI00104C2F20)

HSP 1 Score: 90.1 bits (222), Expect = 2.300e-20
Identity = 51/100 (51.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    1 RKGMVEAVDSYSGFGDATETKELEETPLRALLTERGVKNVFVAGLAADYCVAFTAKDALRFGFNTWLITDATKEIDRAVRDKEWATCSELGGKFIKAEHV 300
            RKGM   +DSYSGF D    K    T L   L E+G+K+VFV GLAADYCV FTA DALR GFNT +I DAT+ ID    +       + GG  I A+ V
Sbjct:  105 RKGMDPQIDSYSGFYDNGHRKA---TGLSGYLKEKGIKDVFVCGLAADYCVYFTAIDALREGFNTTIIVDATRPIDATGFETAKTELVQKGGHIIAAQFV 201
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BLAST of mRNA_M-pyrifera_M_contig119673.4055.1 vs. uniprot
Match: UPI001F4851AA (bifunctional nicotinamidase/pyrazinamidase n=2 Tax=Fulvivirga TaxID=396811 RepID=UPI001F4851AA)

HSP 1 Score: 90.1 bits (222), Expect = 2.300e-20
Identity = 49/100 (49.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 RKGMVEAVDSYSGFGDATETKELEETPLRALLTERGVKNVFVAGLAADYCVAFTAKDALRFGFNTWLITDATKEIDRAVRDKEWATCSELGGKFIKAEHV 300
            RKGM   +DSYSGF D      ++ T L   L ER VKNV++ GLAAD+CV +TAKDAL+ GF T++I DAT+ ID     K       LGGK I +  V
Sbjct:  105 RKGMDTEIDSYSGFYD---NGHMKSTGLAGYLRERKVKNVYICGLAADFCVFYTAKDALKEGFGTYVIEDATRAIDPEGFSKAKEEIKALGGKVIMSSDV 201
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BLAST of mRNA_M-pyrifera_M_contig119673.4055.1 vs. uniprot
Match: UPI00082E59AA (bifunctional nicotinamidase/pyrazinamidase n=1 Tax=Rufibacter roseus TaxID=1567108 RepID=UPI00082E59AA)

HSP 1 Score: 89.0 bits (219), Expect = 7.180e-20
Identity = 47/100 (47.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 RKGMVEAVDSYSGFGDATETKELEETPLRALLTERGVKNVFVAGLAADYCVAFTAKDALRFGFNTWLITDATKEIDRAVRDKEWATCSELGGKFIKAEHV 300
            RKG    +DSYSGF D      L+ T L   L  +GVK V++ GLAADYCV F+AKDAL+ GF+T+ I DAT+ ID++  +K  A   + GGK I+++ +
Sbjct:  105 RKGTDPEIDSYSGFYD---NGHLKSTALADYLKGKGVKEVYLVGLAADYCVYFSAKDALQEGFSTYFIEDATRAIDQSGFEKAKADILQKGGKIIQSQQL 201
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BLAST of mRNA_M-pyrifera_M_contig119673.4055.1 vs. uniprot
Match: A0A7H0GVI9_9BACT (Bifunctional nicotinamidase/pyrazinamidase n=4 Tax=Hymenobacter TaxID=89966 RepID=A0A7H0GVI9_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 8.320e-20
Identity = 50/97 (51.55%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:    1 RKGMVEAVDSYSGFGDATETKELEETPLRALLTERGVKNVFVAGLAADYCVAFTAKDALRFGFNTWLITDATKEIDRAVRDKEWATCSELGGKFIKA 291
            RKG    +DSYSGF D  + K    T L A L  RG+ +V+VAGLAADYCV FTAKDAL  GF T+LI DAT+ I     ++  A    LGGK I +
Sbjct:  105 RKGTDPEIDSYSGFYDNGQRKA---TGLAAYLAGRGITSVYVAGLAADYCVYFTAKDALNEGFETFLIEDATRPISPEGFERAKANLENLGGKIISS 198
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BLAST of mRNA_M-pyrifera_M_contig119673.4055.1 vs. uniprot
Match: D5BCK5_ZUNPS (Bifunctional pyrazinamidase/nicotinamidase n=5 Tax=Flavobacteriaceae TaxID=49546 RepID=D5BCK5_ZUNPS)

HSP 1 Score: 86.7 bits (213), Expect = 4.960e-19
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    1 RKGMVEAVDSYSGFGDATETKELEETPLRALLTERGVKNVFVAGLAADYCVAFTAKDALRFGFNTWLITDATKEIDRAVRDKEWATCSELGGKFIKAEHV 300
            RKG    +DSYSGF D      L+ T L   L E+G+  ++ AGLA D+CVAF+ KDAL  GF  +LI DAT+ ID A  +K  A   E GGK + A+ V
Sbjct:  104 RKGTDPEIDSYSGFYD---NAHLKSTGLSGYLKEKGINELYFAGLAGDFCVAFSVKDALAEGFAAFLIEDATRAIDAAGFEKAKAEIVEKGGKILYADEV 200
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BLAST of mRNA_M-pyrifera_M_contig119673.4055.1 vs. uniprot
Match: A0A1I1DVW6_9FLAO (Nicotinamidase/pyrazinamidase n=2 Tax=Zunongwangia TaxID=417127 RepID=A0A1I1DVW6_9FLAO)

HSP 1 Score: 86.7 bits (213), Expect = 4.960e-19
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    1 RKGMVEAVDSYSGFGDATETKELEETPLRALLTERGVKNVFVAGLAADYCVAFTAKDALRFGFNTWLITDATKEIDRAVRDKEWATCSELGGKFIKAEHV 300
            RKG    +DSYSGF D      L+ T L   L E+GV  ++ AGLA D+CVAF+ KDAL  GF ++LI DAT+ ID    +K  A   E GGK + A+ +
Sbjct:  104 RKGTNPEIDSYSGFYD---NAHLKSTGLSGYLKEKGVTELYFAGLAGDFCVAFSVKDALNEGFTSFLIEDATRAIDAEGFEKAKAEIVEKGGKILNADEI 200
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BLAST of mRNA_M-pyrifera_M_contig119673.4055.1 vs. uniprot
Match: A0A6I7QJ11_9BACT (Bifunctional nicotinamidase/pyrazinamidase n=1 Tax=Bacteroidia bacterium TaxID=2044936 RepID=A0A6I7QJ11_9BACT)

HSP 1 Score: 85.9 bits (211), Expect = 1.010e-18
Identity = 48/100 (48.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 RKGMVEAVDSYSGFGDATETKELEETPLRALLTERGVKNVFVAGLAADYCVAFTAKDALRFGFNTWLITDATKEIDRAVRDKEWATCSELGGKFIKAEHV 300
            RKGM   +DSYS F D    K    T L   L  RGVK V+++GLA D+CV F+A DAL  GF+T+LI DATK ID    +K      +LGGK I A+++
Sbjct:  105 RKGMDPEIDSYSTFYDNEHKKN---TGLADYLKGRGVKQVYLSGLAGDFCVGFSALDALNEGFDTFLIEDATKPIDNEGFEKMKERIKKLGGKIIHADNI 201
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119673.4055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8C9G6_CAFRO1.080e-2654.00Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
L8JI00_9BACT1.970e-2154.64Nicotinamidase n=1 Tax=Fulvivirga imtechensis AK7 ... [more]
UPI00192E13058.940e-2151.00bifunctional nicotinamidase/pyrazinamidase n=1 Tax... [more]
UPI00104C2F202.300e-2051.00bifunctional nicotinamidase/pyrazinamidase n=2 Tax... [more]
UPI001F4851AA2.300e-2049.00bifunctional nicotinamidase/pyrazinamidase n=2 Tax... [more]
UPI00082E59AA7.180e-2047.00bifunctional nicotinamidase/pyrazinamidase n=1 Tax... [more]
A0A7H0GVI9_9BACT8.320e-2051.55Bifunctional nicotinamidase/pyrazinamidase n=4 Tax... [more]
D5BCK5_ZUNPS4.960e-1947.00Bifunctional pyrazinamidase/nicotinamidase n=5 Tax... [more]
A0A1I1DVW6_9FLAO4.960e-1946.00Nicotinamidase/pyrazinamidase n=2 Tax=Zunongwangia... [more]
A0A6I7QJ11_9BACT1.010e-1848.00Bifunctional nicotinamidase/pyrazinamidase n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119673contigM-pyrifera_M_contig119673:3..302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score86.3
Seed ortholog evalue8.7e-15
Seed eggNOG ortholog1237149.C900_00330
Preferred namepncA
KEGG rclassRC00100
KEGG koko:K08281,ko:K12132
KEGG ReactionR01268
KEGG Pathwayko00760,ko01100,map00760,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006766,GO:0006767,GO:0006769,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008936,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009820,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0017144,GO:0018130,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0030145,GO:0034641,GO:0034654,GO:0043094,GO:0043167,GO:0043169,GO:0043173,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Isochorismatase family
EggNOG OGs47PIR@768503,4NKPP@976,COG1335@1,COG1335@2
EC2.7.11.1,3.5.1.19
COG Functional cat.Q
BiGG ReactioniE2348C_1286.E2348C_1895,iECs_1301.ECs2475,iZ_1308.Z2802
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons1
Model size300
Cds size291
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815716.382023-UTR-M-pyrifera_M_contig119673:2..111622815716.382023-UTR-M-pyrifera_M_contig119673:2..11Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119673 3..11 +
1692277535.8527892-UTR-M-pyrifera_M_contig119673:2..111692277535.8527892-UTR-M-pyrifera_M_contig119673:2..11Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119673 3..11 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815716.392167-CDS-M-pyrifera_M_contig119673:11..3021622815716.392167-CDS-M-pyrifera_M_contig119673:11..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119673 12..302 +
1692277535.8626547-CDS-M-pyrifera_M_contig119673:11..3021692277535.8626547-CDS-M-pyrifera_M_contig119673:11..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119673 12..302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119673.4055.1prot_M-pyrifera_M_contig119673.4055.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119673 12..302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119673.4055.1

>prot_M-pyrifera_M_contig119673.4055.1 ID=prot_M-pyrifera_M_contig119673.4055.1|Name=mRNA_M-pyrifera_M_contig119673.4055.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
MVEAVDSYSGFGDATETKELEETPLRALLTERGVKNVFVAGLAADYCVAF
TAKDALRFGFNTWLITDATKEIDRAVRDKEWATCSELGGKFIKAEHV
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mRNA from alignment at M-pyrifera_M_contig119673:3..302+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119673.4055.1 ID=mRNA_M-pyrifera_M_contig119673.4055.1|Name=mRNA_M-pyrifera_M_contig119673.4055.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig119673:3..302+ (Macrocystis pyrifera P11B4 male)
CGGAAAGGAATGGTTGAAGCTGTAGACTCCTACTCTGGCTTTGGAGATGC
AACTGAGACAAAAGAGTTGGAAGAGACTCCGCTTCGCGCCCTTCTTACCG
AGAGAGGCGTCAAGAATGTCTTCGTCGCAGGACTTGCAGCAGACTACTGT
GTCGCATTCACAGCAAAAGATGCCCTCCGCTTTGGCTTCAATACCTGGCT
TATCACAGATGCCACGAAGGAAATTGACAGAGCTGTCAGAGACAAGGAGT
GGGCCACTTGCAGTGAACTTGGTGGGAAGTTCATCAAGGCAGAGCATGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119673:3..302+

>mRNA_M-pyrifera_M_contig119673.4055.1 ID=mRNA_M-pyrifera_M_contig119673.4055.1|Name=mRNA_M-pyrifera_M_contig119673.4055.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig119673:3..302+ (Macrocystis pyrifera P11B4 male)
ATGGTTGAAGCTGTAGACTCCTACTCTGGCTTTGGAGATGCAACTGAGAC
AAAAGAGTTGGAAGAGACTCCGCTTCGCGCCCTTCTTACCGAGAGAGGCG
TCAAGAATGTCTTCGTCGCAGGACTTGCAGCAGACTACTGTGTCGCATTC
ACAGCAAAAGATGCCCTCCGCTTTGGCTTCAATACCTGGCTTATCACAGA
TGCCACGAAGGAAATTGACAGAGCTGTCAGAGACAAGGAGTGGGCCACTT
GCAGTGAACTTGGTGGGAAGTTCATCAAGGCAGAGCATGTCATGGTTGAA
GCTGTAGACTCCTACTCTGGCTTTGGAGATGCAACTGAGACAAAAGAGTT
GGAAGAGACTCCGCTTCGCGCCCTTCTTACCGAGAGAGGCGTCAAGAATG
TCTTCGTCGCAGGACTTGCAGCAGACTACTGTGTCGCATTCACAGCAAAA
GATGCCCTCCGCTTTGGCTTCAATACCTGGCTTATCACAGATGCCACGAA
GGAAATTGACAGAGCTGTCAGAGACAAGGAGTGGGCCACTTGCAGTGAAC
TTGGTGGGAAGTTCATCAAGGCAGAGCATGTC
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