mRNA_M-pyrifera_M_contig119618.4046.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119618.4046.1
Unique NamemRNA_M-pyrifera_M_contig119618.4046.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119618.4046.1 vs. uniprot
Match: A0A7S4IQ10_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IQ10_9EUKA)

HSP 1 Score: 133 bits (334), Expect = 1.460e-35
Identity = 64/119 (53.78%), Postives = 93/119 (78.15%), Query Frame = 1
Query:    1 WIESFALGVALMRSAVRTLPMACLITFFSVMAPIGIIVGMIVASIVENA--ETLEAYCISFAAGTFIYVAVVDILLEEFEIARDKWVKVLFVLIGFAMDAAIIITFEHLGHSEEEDHGH 351
            W+ESFALGV ++R++V   PMA L+ FFS MAP GII+G ++ + + N+  E LEAY ++ AAG+F+YVA+VDIL+EEF I RDKW+K LF++IGFA++A +++ FE L H +++DH H
Sbjct:  211 WVESFALGVNILRASVHIRPMAMLVLFFSTMAPAGIIIGTLLNTFMSNSAGEALEAYSVAIAAGSFLYVAIVDILVEEFLIIRDKWMKTLFLVIGFALEAGVVLIFEELAH-KDQDHDH 328          
BLAST of mRNA_M-pyrifera_M_contig119618.4046.1 vs. uniprot
Match: L8GSU8_ACACA (Metal cation transporter, ZIP subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GSU8_ACACA)

HSP 1 Score: 91.3 bits (225), Expect = 1.180e-19
Identity = 46/109 (42.20%), Postives = 74/109 (67.89%), Query Frame = 1
Query:    1 WIESFALGVALMRSAVRTLPMACLITFFSVMAPIGIIVGMIVASIVENA---ETLEAYCISFAAGTFIYVAVVDILLEEFEIARDKWVKVLFVLIGFAMDAAIIITFEH 318
            WIE+FALGV+L+++  + L     +  F++M P+GI++G  + + V  +   E   A   + A+GTF+YVA+VDILLEEF+ ARDK++K L  ++GFA  A+++  F+H
Sbjct:  192 WIEAFALGVSLLKAGKQGLSFFKFLMLFAIMCPLGILLGSGLYTAVAGSTAGELTTAVLTAIASGTFVYVAIVDILLEEFQTARDKYIKFLLAVVGFAAMASLLFAFDH 300          
BLAST of mRNA_M-pyrifera_M_contig119618.4046.1 vs. uniprot
Match: UPI0015540913 (ZIP family metal transporter n=1 Tax=unclassified Lentimicrobium TaxID=2677434 RepID=UPI0015540913)

HSP 1 Score: 72.4 bits (176), Expect = 6.610e-13
Identity = 42/101 (41.58%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   10 SFALGVALMRSAVRTLPMACLITFFSVMAPIGIIVGMIVASIVENAETL--EAYCISFAAGTFIYVAVVDILLEEFEIARDKWVKVLFVLIGFAMDAAIII 306
            SFALGV++ +S  +       I FFS+M PIGII+G +++ I  +   L  EA   + AAGTF+Y+AV+DI+ E FE  + +W K   +++GF + A I I
Sbjct:  154 SFALGVSMAQSNTQKSLFIKTILFFSIMTPIGIIIGSVLSQIDSSRTALWFEAIFDALAAGTFVYIAVLDIIHEVFEAPKKRWGKFAILILGFLLMAGIAI 254          
BLAST of mRNA_M-pyrifera_M_contig119618.4046.1 vs. uniprot
Match: UPI000F83DBB4 (ZIP family metal transporter n=1 Tax=Sulfuriflexus mobilis TaxID=1811807 RepID=UPI000F83DBB4)

HSP 1 Score: 71.6 bits (174), Expect = 1.300e-12
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 1
Query:   10 SFALGVALMRSAVRTLPMACLITFFSVMAPIGIIVGMIVASIVE-NAET-LEAYCISFAAGTFIYVAVVDILLEEFEIARDKWVKVLFVLIGFAMDAAIII 306
            +FALGV+L  S   T     +I FF+ M P+G+++G   ++ +  NA    EA     AAGTF+YVAVVDI+ + FE A D+WVK L +  GF + A I I
Sbjct:  155 AFALGVSLKESDFPTFRHVVIIGFFAAMTPLGVVIGTAFSTTLSSNANAAFEAVFDGLAAGTFLYVAVVDIIKDVFEKADDRWVKALLITGGFGLMALIAI 255          
BLAST of mRNA_M-pyrifera_M_contig119618.4046.1 vs. uniprot
Match: UPI001C35E9EE ((large yellow croaker) hypothetical protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI001C35E9EE)

HSP 1 Score: 66.6 bits (161), Expect = 3.060e-11
Identity = 38/97 (39.18%), Postives = 65/97 (67.01%), Query Frame = 1
Query:   13 FALGVALMRSAVRTLPMACLITFFSVMAPIGIIVGM-IVASIVENAETLEAYCISFAAGTFIYVAVVDILLEEFEIARDKWVKVLFVLIGFAMDAAI 300
            F+L V L++SAVR L +A  I  F++M+PIGI +G+ ++ + +E+   ++A     AAGTF+Y+  ++IL  E      + +KVLF+L+GF++ AA+
Sbjct:   77 FSLSVKLVQSAVRPLWLAAYIGVFALMSPIGIAIGISVMEAQLESGALIQAVLEGLAAGTFVYITFLEILPHELNSPGKQLLKVLFILLGFSIMAAL 173          
BLAST of mRNA_M-pyrifera_M_contig119618.4046.1 vs. uniprot
Match: F4PPW2_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PPW2_CAVFA)

HSP 1 Score: 68.6 bits (166), Expect = 4.020e-11
Identity = 41/119 (34.45%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 WIESFALGVALMRSAVRTLPMACLITFFSVMAPIGIIVGMIVASIVENAETLEAYCISFAAGTFIYVAVVDILLEEF-----EIARDKWVKVLFVLIGFAMDAAIIITFEHLGHSEEED 342
            W+E+ +LGV+L+R+         L++ +S+  P+GI++G + AS+   + T  +  ++F++GTFIY+A++DIL+ EF     +    K VK+ F +IGF   +A+ + F    HSE+E+
Sbjct:  293 WLEAMSLGVSLVRNKSSFYETLKLVSLYSLTEPLGIVLG-VAASVSVASTTATSLVLAFSSGTFIYIALMDILVVEFNESIKQSRLTKLVKLAFCIIGFLGMSALTLAF----HSEDEE 406          
BLAST of mRNA_M-pyrifera_M_contig119618.4046.1 vs. uniprot
Match: A0A524MFW6_9BACT (ZIP family metal transporter n=1 Tax=Candidatus Atribacteria bacterium TaxID=2053509 RepID=A0A524MFW6_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 1.340e-10
Identity = 38/101 (37.62%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   10 SFALGVALMRSAVRTLPMACLITFFSVMAPIGIIVGMIVASIVEN--AETLEAYCISFAAGTFIYVAVVDILLEEFEIARDKWVKVLFVLIGFAMDAAIII 306
            +FALGV+L+RS +  L +  ++  F++M P GI++G  V+S ++   ++ +     + AAGTF+YVA+VDI+ EEFE     W K   ++ G A  A + I
Sbjct:  157 AFALGVSLVRSGMDALHLRRVLLLFALMTPFGILLGEFVSSRIQGQTSDLVSGIVNAIAAGTFLYVAIVDIIHEEFESQERLWEKFALLVCGLAFMALLAI 257          
BLAST of mRNA_M-pyrifera_M_contig119618.4046.1 vs. uniprot
Match: A0A7S4IDT9_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IDT9_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 1.420e-10
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 1
Query:    1 WIESFALGVALMRSAVRTLPMACLITFFSVMAPIGIIVGMIVASIVENAETL--EAYCISFAAGTFIYVAVVDILLEEFEIARDKWVKVLFVLIGFAMDAAIIITF 312
            W+ + ALG++L RS V       +   +  M PIGI++G ++   + N   L  + + +S AAGTFIYVAVVD++L+EF     K+ K   ++IGF     +++ F
Sbjct:  200 WVMALALGISLHRSKVSPKVHFVVALVWPSMQPIGILIGSLLVLFLANNILLAIQGFFVSLAAGTFIYVAVVDVILQEFTAQEYKYQKFALLMIGFIAMVGLLLLF 305          
BLAST of mRNA_M-pyrifera_M_contig119618.4046.1 vs. uniprot
Match: A0A518B1X7_9BACT (Zinc transporter ZupT n=1 Tax=Planctomycetes bacterium Pan216 TaxID=2527975 RepID=A0A518B1X7_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 2.870e-10
Identity = 35/101 (34.65%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   10 SFALGVALMRSAVRTLPMACLITFFSVMAPIGIIVGMIVASIVENAET--LEAYCISFAAGTFIYVAVVDILLEEFEIARDKWVKVLFVLIGFAMDAAIII 306
            +FAL V+++R  +    +  L+  FS+M P+G+  G ++  +++ ++   + +  ++FAAGTF+Y+A +DIL  EF    D++ K L V +GFA+ AA+ I
Sbjct:  169 AFALAVSMLRVGMPRGTIFILVMVFSLMTPLGVGGGYLLGELLQGSDVHAVSSMVLAFAAGTFLYIAAIDILHAEFAFPLDRYPKFLAVCLGFALTAAVAI 269          
BLAST of mRNA_M-pyrifera_M_contig119618.4046.1 vs. uniprot
Match: A0A553Q184_9TELE (Uncharacterized protein n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553Q184_9TELE)

HSP 1 Score: 65.1 bits (157), Expect = 4.690e-10
Identity = 38/97 (39.18%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   13 FALGVALMRSAVRTLPMACLITFFSVMAPIGIIVGMIVASI-VENAETLEAYCISFAAGTFIYVAVVDILLEEFEIARDKWVKVLFVLIGFAMDAAI 300
            F+L V L++SAV+   +   IT F+VM+P+GI +G+I+    +E+   ++A     AAGTF+Y+  ++IL  E   A    +KVLF+L GF++ AA+
Sbjct:  194 FSLSVKLVQSAVKPAWVLLYITVFAVMSPLGIAIGIIIIEAELESGAFIQAVLEGMAAGTFVYITFMEILPHELNSAERPLLKVLFLLFGFSVMAAL 290          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119618.4046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IQ10_9EUKA1.460e-3553.78Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
L8GSU8_ACACA1.180e-1942.20Metal cation transporter, ZIP subfamily protein n=... [more]
UPI00155409136.610e-1341.58ZIP family metal transporter n=1 Tax=unclassified ... [more]
UPI000F83DBB41.300e-1243.56ZIP family metal transporter n=1 Tax=Sulfuriflexus... [more]
UPI001C35E9EE3.060e-1139.18(large yellow croaker) hypothetical protein n=1 Ta... [more]
F4PPW2_CAVFA4.020e-1134.45Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
A0A524MFW6_9BACT1.340e-1037.62ZIP family metal transporter n=1 Tax=Candidatus At... [more]
A0A7S4IDT9_9EUKA1.420e-1035.85Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A518B1X7_9BACT2.870e-1034.65Zinc transporter ZupT n=1 Tax=Planctomycetes bacte... [more]
A0A553Q184_9TELE4.690e-1039.18Uncharacterized protein n=1 Tax=Danionella translu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119618contigM-pyrifera_M_contig119618:190..543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score68.2
Seed ortholog evalue3e-09
Seed eggNOG ortholog1167006.UWK_01335
Preferred namezupT
KEGG koko:K07238,ko:K11021
KEGG TC2.A.5.5
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.ZIP Zinc transporter
EggNOG OGs1RF7H@1224,2WSUS@28221,42Y2I@68525,COG0428@1,COG0428@2
COG Functional cat.P
Best tax levelDeltaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko02042
Exons1
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815716.0177891-CDS-M-pyrifera_M_contig119618:189..5431622815716.0177891-CDS-M-pyrifera_M_contig119618:189..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119618 190..543 -
1692277535.7250419-CDS-M-pyrifera_M_contig119618:189..5431692277535.7250419-CDS-M-pyrifera_M_contig119618:189..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119618 190..543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119618.4046.1prot_M-pyrifera_M_contig119618.4046.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119618 190..543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119618.4046.1

>prot_M-pyrifera_M_contig119618.4046.1 ID=prot_M-pyrifera_M_contig119618.4046.1|Name=mRNA_M-pyrifera_M_contig119618.4046.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
WIESFALGVALMRSAVRTLPMACLITFFSVMAPIGIIVGMIVASIVENAE
TLEAYCISFAAGTFIYVAVVDILLEEFEIARDKWVKVLFVLIGFAMDAAI
IITFEHLGHSEEEDHGH*
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mRNA from alignment at M-pyrifera_M_contig119618:190..543-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119618.4046.1 ID=mRNA_M-pyrifera_M_contig119618.4046.1|Name=mRNA_M-pyrifera_M_contig119618.4046.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig119618:190..543- (Macrocystis pyrifera P11B4 male)
TGGATTGAATCCTTTGCCCTGGGTGTCGCTCTCATGCGGTCGGCTGTTCG TACCCTACCCATGGCCTGTCTCATTACCTTCTTCTCCGTAATGGCACCGA TCGGCATCATCGTTGGAATGATCGTGGCGAGCATTGTTGAGAACGCTGAG ACTCTCGAGGCGTACTGCATCTCCTTCGCCGCTGGCACGTTCATCTACGT CGCTGTGGTGGATATTCTCTTGGAGGAGTTTGAGATCGCCAGAGATAAGT GGGTCAAGGTCCTCTTTGTGCTCATTGGCTTTGCCATGGACGCAGCGATC ATCATTACATTCGAGCATCTCGGCCATTCAGAGGAAGAGGACCACGGCCA CTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119618:190..543-

>mRNA_M-pyrifera_M_contig119618.4046.1 ID=mRNA_M-pyrifera_M_contig119618.4046.1|Name=mRNA_M-pyrifera_M_contig119618.4046.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig119618:190..543- (Macrocystis pyrifera P11B4 male)
TGGATTGAATCCTTTGCCCTGGGTGTCGCTCTCATGCGGTCGGCTGTTCG
TACCCTACCCATGGCCTGTCTCATTACCTTCTTCTCCGTAATGGCACCGA
TCGGCATCATCGTTGGAATGATCGTGGCGAGCATTGTTGAGAACGCTGAG
ACTCTCGAGGCGTACTGCATCTCCTTCGCCGCTGGCACGTTCATCTACGT
CGCTGTGGTGGATATTCTCTTGGAGGAGTTTGAGATCGCCAGAGATAAGT
GGGTCAAGGTCCTCTTTGTGCTCATTGGCTTTGCCATGGACGCAGCGATC
ATCATTACATTCGAGCATCTCGGCCATTCAGAGGAAGAGGACCACGGCCA
CTAGTGGATTGAATCCTTTGCCCTGGGTGTCGCTCTCATGCGGTCGGCTG
TTCGTACCCTACCCATGGCCTGTCTCATTACCTTCTTCTCCGTAATGGCA
CCGATCGGCATCATCGTTGGAATGATCGTGGCGAGCATTGTTGAGAACGC
TGAGACTCTCGAGGCGTACTGCATCTCCTTCGCCGCTGGCACGTTCATCT
ACGTCGCTGTGGTGGATATTCTCTTGGAGGAGTTTGAGATCGCCAGAGAT
AAGTGGGTCAAGGTCCTCTTTGTGCTCATTGGCTTTGCCATGGACGCAGC
GATCATCATTACATTCGAGCATCTCGGCCATTCAGAGGAAGAGGACCACG
GCCACTAG
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