mRNA_M-pyrifera_M_contig119535.4037.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119535.4037.1
Unique NamemRNA_M-pyrifera_M_contig119535.4037.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119535.4037.1 vs. uniprot
Match: A0A6H5KIX2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIX2_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 5.530e-37
Identity = 66/96 (68.75%), Postives = 77/96 (80.21%), Query Frame = 1 
Query:    1 MCVPYLRSANVVMSASEKRFNSQQRRFRVVVENTIGQIKKWKAIG-GKAFRHHRDFENEVFDVSSKLTARIMRVRSQYPRSLQWTTEVMEAWESKL 285
            MCVPY +     +S  E+RFN++QRRFRVVVENT+GQIKKWKA+G GKAFRH RDFE +VFDV ++LTARIMRVR  YPRS +WT  V EAWE KL
Sbjct:  158 MCVPYRKPQQGDLSNEERRFNTEQRRFRVVVENTVGQIKKWKAVGNGKAFRHRRDFEKDVFDVCARLTARIMRVRDGYPRSPEWTGRVKEAWEVKL 253
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BLAST of mRNA_M-pyrifera_M_contig119535.4037.1 vs. uniprot
Match: A0A6H5KI20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI20_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 6.470e-33
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:   37 MSASEKRFNSQQRRFRVVVENTIGQIKKWKAIG-GKAFRHHRDFENEVFDVSSKLTARIMRVRSQYPRSLQWTTEVMEAWESKL 285
            +S  E+RFN++QRRFRVV ENTIG+IKKWKA+G GKAFRH RDFE +VFDV ++LTARIMRVR +YPRS +WT  V EAWE KL
Sbjct:  224 LSNEERRFNTEQRRFRVVAENTIGKIKKWKAVGNGKAFRHRRDFEKDVFDVCARLTARIMRVRDRYPRSPEWTGRVKEAWEVKL 307
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BLAST of mRNA_M-pyrifera_M_contig119535.4037.1 vs. uniprot
Match: A0A6H5JLH9_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH9_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 9.460e-28
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:    1 MCVPYLRSANVVMSASEKRFNSQQRRFRVVVENTIGQIKKWKAIGGKAFRHHRDFENEVFDVSSKLTARIMRVRSQYPRSLQWTTEVMEAWESKL 285
            MCVP LR  +  ++ +E+ FN++QRR RVVVENTIGQ+KKW+ IG   FRHHRD E  VF++ +KLTARIMRVR ++PRS +W  +  E WE+KL
Sbjct:  188 MCVP-LRGGH--LTEAERGFNARQRRIRVVVENTIGQVKKWRVIGTGKFRHHRDLEPAVFELCTKLTARIMRVRDKFPRSKEWLWKEYEEWEAKL 279
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BLAST of mRNA_M-pyrifera_M_contig119535.4037.1 vs. uniprot
Match: A0A6H5JMX0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX0_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.650e-26
Identity = 53/79 (67.09%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:   52 KRFNSQQRRFRVVVENTIGQIKKWKAIG-GKAFRHHRDFENEVFDVSSKLTARIMRVRSQYPRSLQWTTEVMEAWESKL 285
            +R+N +QRRFRVVVENTIGQIKK+K +G GKAFRH RDFE  VF+V ++LTARIMRVR++YPRS  W  +  E WE+KL
Sbjct:  303 RRYNREQRRFRVVVENTIGQIKKFKTVGNGKAFRHQRDFEKHVFNVCARLTARIMRVRNKYPRSEAWIGDKKEEWEAKL 381
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BLAST of mRNA_M-pyrifera_M_contig119535.4037.1 vs. uniprot
Match: A0A7S4JHP5_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4JHP5_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 2.690e-14
Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 1 
Query:   10 PYLRSANVVMSASEKRFNSQQRRFRVVVENTIGQIKKWKAIGGKAFRHHRDFENEVFDVSSKLTARIMRVRSQYPRSLQWTTEVMEAWESK 282
            P LR A   M     + N QQR  R  +E T G IK+W  +    FR   D + + F + ++LTAR+MRVR QYPR  +W     EAWE +
Sbjct:   18 PELRKAAPPMRKMLAKMNKQQRYLRCPIEQTFGMIKQWGIVSDTVFRGSLDQQGDNFLLCTQLTARLMRVRDQYPRGAKWMRGEKEAWEEE 108
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BLAST of mRNA_M-pyrifera_M_contig119535.4037.1 vs. uniprot
Match: A0A7S4JHM0_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4JHM0_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 8.040e-13
Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 1 
Query:   10 PYLRSANVVMSASEKRFNSQQRRFRVVVENTIGQIKKWKAIGGKAFRHHRDFENEVFDVSSKLTARIMRVRSQYPRSLQWTTEVMEAWESK 282
            P LR A   M     + N QQR  R  +E T G IK+W  +    FR   D + + F + ++LTAR+MRVR QYPR  +W     EAWE +
Sbjct:  333 PELRKAAPPMRKMLAKMNKQQRYLRCPIEQTFGMIKQWGIVSDTVFRGSLDQQGDNFLLCTQLTARLMRVRDQYPRGAKWMRGEKEAWEEE 423
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119535.4037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KIX2_9PHAE5.530e-3768.75DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KI20_9PHAE6.470e-3371.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLH9_9PHAE9.460e-2857.89DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JMX0_9PHAE1.650e-2667.09DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S4JHP5_9EUKA2.690e-1440.66Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S4JHM0_9EUKA8.040e-1340.66Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119535contigM-pyrifera_M_contig119535:105..389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size285
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815715.5200262-CDS-M-pyrifera_M_contig119535:104..3891622815715.5200262-CDS-M-pyrifera_M_contig119535:104..389Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119535 105..389 +
1692277535.4997618-CDS-M-pyrifera_M_contig119535:104..3891692277535.4997618-CDS-M-pyrifera_M_contig119535:104..389Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119535 105..389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119535.4037.1prot_M-pyrifera_M_contig119535.4037.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119535 105..389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119535.4037.1

>prot_M-pyrifera_M_contig119535.4037.1 ID=prot_M-pyrifera_M_contig119535.4037.1|Name=mRNA_M-pyrifera_M_contig119535.4037.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
MCVPYLRSANVVMSASEKRFNSQQRRFRVVVENTIGQIKKWKAIGGKAFR
HHRDFENEVFDVSSKLTARIMRVRSQYPRSLQWTTEVMEAWESKL
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mRNA from alignment at M-pyrifera_M_contig119535:105..389+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119535.4037.1 ID=mRNA_M-pyrifera_M_contig119535.4037.1|Name=mRNA_M-pyrifera_M_contig119535.4037.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig119535:105..389+ (Macrocystis pyrifera P11B4 male)
ATGTGCGTGCCGTATCTCAGGTCTGCTAACGTCGTGATGTCTGCATCAGA
GAAGAGGTTCAACAGCCAGCAGCGCCGCTTCAGGGTAGTGGTTGAAAACA
CCATCGGGCAGATCAAGAAGTGGAAGGCCATCGGAGGCAAGGCGTTCAGG
CACCACCGTGATTTTGAGAATGAGGTGTTCGATGTTAGCTCAAAGCTTAC
AGCTCGCATTATGCGGGTCCGGAGCCAGTACCCCCGTAGTCTACAGTGGA
CTACGGAAGTGATGGAGGCATGGGAGTCCAAGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119535:105..389+

>mRNA_M-pyrifera_M_contig119535.4037.1 ID=mRNA_M-pyrifera_M_contig119535.4037.1|Name=mRNA_M-pyrifera_M_contig119535.4037.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig119535:105..389+ (Macrocystis pyrifera P11B4 male)
ATGTGCGTGCCGTATCTCAGGTCTGCTAACGTCGTGATGTCTGCATCAGA
GAAGAGGTTCAACAGCCAGCAGCGCCGCTTCAGGGTAGTGGTTGAAAACA
CCATCGGGCAGATCAAGAAGTGGAAGGCCATCGGAGGCAAGGCGTTCAGG
CACCACCGTGATTTTGAGAATGAGGTGTTCGATGTTAGCTCAAAGCTTAC
AGCTCGCATTATGCGGGTCCGGAGCCAGTACCCCCGTAGTCTACAGTGGA
CTACGGAAGTGATGGAGGCATGGGAGTCCAAGCTGATGTGCGTGCCGTAT
CTCAGGTCTGCTAACGTCGTGATGTCTGCATCAGAGAAGAGGTTCAACAG
CCAGCAGCGCCGCTTCAGGGTAGTGGTTGAAAACACCATCGGGCAGATCA
AGAAGTGGAAGGCCATCGGAGGCAAGGCGTTCAGGCACCACCGTGATTTT
GAGAATGAGGTGTTCGATGTTAGCTCAAAGCTTACAGCTCGCATTATGCG
GGTCCGGAGCCAGTACCCCCGTAGTCTACAGTGGACTACGGAAGTGATGG
AGGCATGGGAGTCCAAGCTG
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