mRNA_M-pyrifera_M_contig119495.4028.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119495.4028.1
Unique NamemRNA_M-pyrifera_M_contig119495.4028.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119495.4028.1 vs. uniprot
Match: A0A7V2Y3Q6_9BACT (Dna2/Cas4 domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2Y3Q6_9BACT)

HSP 1 Score: 127 bits (320), Expect = 7.670e-31
Identity = 68/180 (37.78%), Postives = 96/180 (53.33%), Query Frame = 1
Query:    1 PSHRLVLSRRDQFLASTQTVGVLGSPFKTFDQLASEVLEREGECAETLSDFQRTLLIQDVVSQLRDADDLGPLDDACATPGFAAHALRIITQLKQAGIDHERFAEIAGKRERGSGFDPIISRLYAGYQEAVIATHVYDRVGVIWKAETLARNGAPRALSGIDVLLLDAFDDFTPSELRLI 540
            P+ +    R ++ L      G  G P  T D   + +L  EG     L D +R +L+  V+++L     L  L  A  T GFA H LR+ITQLKQA I+   FAE   +R   S  D +++ +Y  YQ  ++    YD  G+ W+A  +AR G P  L  +++LLLD FDDFTPSE RL+
Sbjct:   35 PTRQFASRRLERLLIEGGLSGAWGRPVSTMDDFVAALLHAEGRRPIRLGDLERRILLDRVIARLEAGGALEVLGPAARTNGFATHVLRMITQLKQAAIEPAVFAERVSRRIHPSPLDGVVASVYTEYQRTLLDMGAYDLPGLFWEANLIARAGRPAILEDVEMLLLDGFDDFTPSEFRLL 214          
BLAST of mRNA_M-pyrifera_M_contig119495.4028.1 vs. uniprot
Match: A0A7Y5C7Y5_9BACT (PD-(D/E)XK nuclease family protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5C7Y5_9BACT)

HSP 1 Score: 119 bits (299), Expect = 5.060e-28
Identity = 64/180 (35.56%), Postives = 89/180 (49.44%), Query Frame = 1
Query:    1 PSHRLVLSRRDQFLASTQTVGVLGSPFKTFDQLASEVLEREGECAETLSDFQRTLLIQDVVSQLRDADDLGPLDDACATPGFAAHALRIITQLKQAGIDHERFAEIAGKRERGSGFDPIISRLYAGYQEAVIATHVYDRVGVIWKAETLARNGAPRALSGIDVLLLDAFDDFTPSELRLI 540
            P+      R  + + S    G  G+   +F+     +L   G     + + +R +L+  V+ +L     L  L DA  +PGFA H LR I +LKQA ID   F +    R R S  DPI++ +Y  YQ  +  +  YDRVGV W+A  L   G P      D +L D FDDFTPSE R+I
Sbjct:   35 PTRHEANERAARIIQSHALPGGWGASVVSFEDFVLALLREAGIYPHEMDEVERRMLVSSVLDRLHANGALNELGDAARSPGFANHVLRAIAKLKQAAIDPATFRQFVAARSRTSWIDPIVASIYEAYQSTLHQSDAYDRVGVYWRAHVLLCEGKPSLFDRADCVLFDGFDDFTPSEFRVI 214          
BLAST of mRNA_M-pyrifera_M_contig119495.4028.1 vs. uniprot
Match: A0A847GAE7_9BACT (PDDEXK_1 domain-containing protein n=1 Tax=Candidatus Hydrogenedens sp. TaxID=2654184 RepID=A0A847GAE7_9BACT)

HSP 1 Score: 106 bits (265), Expect = 1.850e-23
Identity = 59/181 (32.60%), Postives = 97/181 (53.59%), Query Frame = 1
Query:    1 PSHRLVLSRRDQFLASTQTVGVLGSPFKTFDQLASEVLEREGECAETLSDFQRTLLIQDVVSQLRDADDLGPLDDACATPGFAAHALRIITQLKQAGIDHERFAE-IAGKRERGSGFDPIISRLYAGYQEAVIATHVYDRVGVIWKAETLARNGAPRALSGIDVLLLDAFDDFTPSELRLI 540
            P+      R +  L         G+P   F+   + +L   G     +S  +RTLL++D +++L+    L  L  A   PG   H L +ITQLKQ  ++ E+F E + G+++ G  +D +++ +Y  YQEA+I   ++D  G+ W A      G P+AL  ++++  D FDDFTPS+LRL+
Sbjct:   35 PNRASATRRMESLLLEGGLPPCFGAPVAEFNDFVAGLLSTAGVSVRLVSGLERTLLMEDCLARLQAEGRLAGLAAAPDAPGLVRHLLEVITQLKQGAVEPEQFRERVLGQKQPGL-WDLMVADVYTAYQEALIGGGLHDVPGLYWLAHEQCAAGRPKALETLELMAFDGFDDFTPSQLRLM 214          
BLAST of mRNA_M-pyrifera_M_contig119495.4028.1 vs. uniprot
Match: A0A1V6D047_9BACT (DNA helicase n=1 Tax=Planctomycetes bacterium ADurb.Bin126 TaxID=1852903 RepID=A0A1V6D047_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 1.270e-10
Identity = 55/185 (29.73%), Postives = 80/185 (43.24%), Query Frame = 1
Query:    1 PSHRLVLSRRDQFLASTQTVGVLGSPFKTFDQLASEVLEREGECAETLSDFQRTLLIQDVVSQLRDADDLGPLDDACATPGFAAHALRIITQLKQAGIDHERFAEIAGKRERGSGFDPIISRLYAGYQEAVIATHVYDRVGVIWKAETLAR-----NGAPRALSGIDVLLLDAFDDFTPSELRLI 540
            P+   V   R + L  +    V+     TF  LA  VL   G  +   S F   LL++ +V +L  A  L  L     TPG      R I +LK+A  D        G R RG   D  +  +Y  YQ  + A +++D  G  W A    R     +  P AL  + +L +D F DFTP++L ++
Sbjct:   32 PNSAAVNDLRRRLLEQSPAGVVMNPQVTTFAGLAQRVLRAAGATSRPASAFHLHLLLRGIVGELATAGKLPALRAVADTPGVIDALERAIGELKRAAFDTPDLRRALGAR-RGRTGD--LLEVYERYQTQLQARNLHDTEGEAWLARDELRRCIEASQPPPALQNVQLLAVDGFTDFTPTQLEML 213          
BLAST of mRNA_M-pyrifera_M_contig119495.4028.1 vs. uniprot
Match: A0A1J5AB68_9CHLR (DNA helicase n=1 Tax=Anaerolineae bacterium CG2_30_64_16 TaxID=1805005 RepID=A0A1J5AB68_9CHLR)

HSP 1 Score: 62.8 bits (151), Expect = 3.110e-8
Identity = 55/172 (31.98%), Postives = 83/172 (48.26%), Query Frame = 1
Query:   61 GVLGSPFKTFDQLASEVL--------EREGECAETLSDFQ---RTLLIQDVVSQLRDADDLGPLDDACATPGFAAHALRIITQLKQAGIDHERFAEI-AGKRERGSGFDPIISRLYAGYQEAVIATHVYDRVGVIWKAETLARNGAPRALSGIDVLLLDAFDDFTPSELRLI 540
            G LG   +TF  L ++VL           GE  + L+      R  LIQ +  +L  A +L     AC  PGFA     +  +LK+A +  +    + AG+  R S     ++RLYA YQ  ++ T   D  G  W A  +A    P  LS + +L +D+FD+F P++LRL+
Sbjct:   53 GALGVVVQTFYGLYADVLALAAGAGARGPGESDQGLARLLPAVRHRLIQRLAERLSAAGELPYYAPACRAPGFARMLGDLFGELKRARVFPDELTPVLAGREPRLSE----LARLYAAYQAWLLDTGWVDADGQGWLA-AIALEEHPELLSDLALLAVDSFDEFNPTQLRLL 219          
BLAST of mRNA_M-pyrifera_M_contig119495.4028.1 vs. uniprot
Match: A0A2M8P026_9CHLR (UvrD-like helicase ATP-binding domain-containing protein n=1 Tax=Phototrophicales bacterium TaxID=2364211 RepID=A0A2M8P026_9CHLR)

HSP 1 Score: 58.2 bits (139), Expect = 1.200e-6
Identity = 43/155 (27.74%), Postives = 75/155 (48.39%), Query Frame = 1
Query:   79 FKTFDQLASEVLEREGECAETLSDFQRTLLIQDVVSQLRDADDLGPLDDACATPGFAAHALRIITQLKQAGIDHERFAEIAGKRERGSGFDPIISRLYAGYQEAVIATHVYDRVGVIWKA-ETLARNGAPRALSGIDVLLLDAFDDFTPSELRLI 540
            F  F  L   +L+  GE    L+  ++ L+++ V+        L        T GF       I +LKQ  +  E +A +A  R         +SRLY+ YQ+A+I  ++ D  G  W A E L ++ +  + +G+D+L++D FD F+ ++  L+
Sbjct:   66 FFNFSDLYQRILDMAGEPQRLLNPTEQRLILRHVIH----TTPLTVFAPVAHTNGFVHIIEDWIRELKQNRVFPEAYASVAQNRREHD-----LSRLYSAYQQALIRYNLMDDEGQGWLAVEALEQSPSLISQAGVDMLIVDGFDQFSHTQSDLL 211          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119495.4028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7V2Y3Q6_9BACT7.670e-3137.78Dna2/Cas4 domain-containing protein n=1 Tax=Candid... [more]
A0A7Y5C7Y5_9BACT5.060e-2835.56PD-(D/E)XK nuclease family protein n=1 Tax=Candida... [more]
A0A847GAE7_9BACT1.850e-2332.60PDDEXK_1 domain-containing protein n=1 Tax=Candida... [more]
A0A1V6D047_9BACT1.270e-1029.73DNA helicase n=1 Tax=Planctomycetes bacterium ADur... [more]
A0A1J5AB68_9CHLR3.110e-831.98DNA helicase n=1 Tax=Anaerolineae bacterium CG2_30... [more]
A0A2M8P026_9CHLR1.200e-627.74UvrD-like helicase ATP-binding domain-containing p... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119495contigM-pyrifera_M_contig119495:4..543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.1
Seed ortholog evalue3.9e-08
Seed eggNOG ortholog756272.Plabr_2614
Preferred nameaddB
KEGG koko:K16899
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PD-(D/E)XK nuclease superfamily
EggNOG OGs2IZEK@203682,COG3857@1,COG3857@2
EC3.6.4.12
COG Functional cat.L
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons1
Model size540
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815715.0799074-CDS-M-pyrifera_M_contig119495:3..5431622815715.0799074-CDS-M-pyrifera_M_contig119495:3..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119495 4..543 -
1692277535.2983112-CDS-M-pyrifera_M_contig119495:3..5431692277535.2983112-CDS-M-pyrifera_M_contig119495:3..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119495 4..543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119495.4028.1prot_M-pyrifera_M_contig119495.4028.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119495 4..543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119495.4028.1

>prot_M-pyrifera_M_contig119495.4028.1 ID=prot_M-pyrifera_M_contig119495.4028.1|Name=mRNA_M-pyrifera_M_contig119495.4028.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp
PSHRLVLSRRDQFLASTQTVGVLGSPFKTFDQLASEVLEREGECAETLSD
FQRTLLIQDVVSQLRDADDLGPLDDACATPGFAAHALRIITQLKQAGIDH
ERFAEIAGKRERGSGFDPIISRLYAGYQEAVIATHVYDRVGVIWKAETLA
RNGAPRALSGIDVLLLDAFDDFTPSELRLI
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mRNA from alignment at M-pyrifera_M_contig119495:4..543-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119495.4028.1 ID=mRNA_M-pyrifera_M_contig119495.4028.1|Name=mRNA_M-pyrifera_M_contig119495.4028.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig119495:4..543- (Macrocystis pyrifera P11B4 male)
CCGTCCCATCGTCTCGTGCTATCCCGCCGCGATCAGTTCCTCGCTTCAAC CCAAACCGTTGGCGTTCTGGGTTCACCGTTTAAGACGTTCGACCAATTGG CGTCGGAGGTTTTGGAGCGCGAGGGGGAATGCGCAGAGACCTTGTCGGAT TTTCAGCGGACGCTCCTGATTCAAGACGTAGTTTCACAACTCCGCGACGC GGATGACCTTGGCCCACTCGACGATGCTTGCGCCACGCCCGGCTTTGCCG CGCACGCGCTTCGCATCATCACACAATTGAAGCAGGCCGGTATCGACCAT GAACGCTTCGCCGAGATTGCCGGTAAGCGCGAGCGCGGGTCCGGGTTTGA TCCCATCATCAGTAGGCTGTACGCGGGATATCAAGAAGCCGTCATCGCGA CGCATGTGTATGATCGGGTCGGTGTTATCTGGAAAGCGGAAACGTTGGCA CGTAACGGAGCACCGAGGGCGTTGTCGGGAATTGATGTACTTCTCCTCGA CGCATTCGACGACTTTACGCCATCAGAACTCCGCCTGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119495:4..543-

>mRNA_M-pyrifera_M_contig119495.4028.1 ID=mRNA_M-pyrifera_M_contig119495.4028.1|Name=mRNA_M-pyrifera_M_contig119495.4028.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig119495:4..543- (Macrocystis pyrifera P11B4 male)
CCGTCCCATCGTCTCGTGCTATCCCGCCGCGATCAGTTCCTCGCTTCAAC
CCAAACCGTTGGCGTTCTGGGTTCACCGTTTAAGACGTTCGACCAATTGG
CGTCGGAGGTTTTGGAGCGCGAGGGGGAATGCGCAGAGACCTTGTCGGAT
TTTCAGCGGACGCTCCTGATTCAAGACGTAGTTTCACAACTCCGCGACGC
GGATGACCTTGGCCCACTCGACGATGCTTGCGCCACGCCCGGCTTTGCCG
CGCACGCGCTTCGCATCATCACACAATTGAAGCAGGCCGGTATCGACCAT
GAACGCTTCGCCGAGATTGCCGGTAAGCGCGAGCGCGGGTCCGGGTTTGA
TCCCATCATCAGTAGGCTGTACGCGGGATATCAAGAAGCCGTCATCGCGA
CGCATGTGTATGATCGGGTCGGTGTTATCTGGAAAGCGGAAACGTTGGCA
CGTAACGGAGCACCGAGGGCGTTGTCGGGAATTGATGTACTTCTCCTCGA
CGCATTCGACGACTTTACGCCATCAGAACTCCGCCTGATCCCGTCCCATC
GTCTCGTGCTATCCCGCCGCGATCAGTTCCTCGCTTCAACCCAAACCGTT
GGCGTTCTGGGTTCACCGTTTAAGACGTTCGACCAATTGGCGTCGGAGGT
TTTGGAGCGCGAGGGGGAATGCGCAGAGACCTTGTCGGATTTTCAGCGGA
CGCTCCTGATTCAAGACGTAGTTTCACAACTCCGCGACGCGGATGACCTT
GGCCCACTCGACGATGCTTGCGCCACGCCCGGCTTTGCCGCGCACGCGCT
TCGCATCATCACACAATTGAAGCAGGCCGGTATCGACCATGAACGCTTCG
CCGAGATTGCCGGTAAGCGCGAGCGCGGGTCCGGGTTTGATCCCATCATC
AGTAGGCTGTACGCGGGATATCAAGAAGCCGTCATCGCGACGCATGTGTA
TGATCGGGTCGGTGTTATCTGGAAAGCGGAAACGTTGGCACGTAACGGAG
CACCGAGGGCGTTGTCGGGAATTGATGTACTTCTCCTCGACGCATTCGAC
GACTTTACGCCATCAGAACTCCGCCTGATC
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