mRNA_M-pyrifera_M_contig119463.4022.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119463.4022.1
Unique NamemRNA_M-pyrifera_M_contig119463.4022.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119463.4022.1 vs. uniprot
Match: A0A3M1SGM4_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3M1SGM4_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 2.440e-8
Identity = 30/110 (27.27%), Postives = 63/110 (57.27%), Query Frame = 1 
Query:    1 PVLVRMEPPVEDLECYVSSANTLCLSGDTKGDTHYTVTVCTTVVDIYGQHLPKEESFTVVIMPLKPQLTAFRSGLYTLDPFAKPGEKNFSYNVMATNVKQVRYAVWQVDP 330
            P +V++ PP+E+++ Y  + N + ++G  KG T YT+T+ +++ DIYGQ L K     + +   +P++ +  +    LDP ++P      ++  + N+   + +++QV P
Sbjct:  391 PSMVKISPPIEEIQIY-PAGNFIHVNGYKKGQTSYTITIDSSLQDIYGQKLDKAVIANITVGQSEPRIFSSNNPFIVLDPNSRP-----IFSFYSINLPSAKVSIYQVQP 494
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BLAST of mRNA_M-pyrifera_M_contig119463.4022.1 vs. uniprot
Match: A0A363T0F6_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A363T0F6_9CHLR)

HSP 1 Score: 54.7 bits (130), Expect = 2.590e-6
Identity = 30/108 (27.78%), Postives = 59/108 (54.63%), Query Frame = 1 
Query:    7 LVRMEPPVEDLECYVSSANTLCLSGDTKGDTHYTVTVCTTVVDIYGQHLPKEESFTVVIMPLKPQLTAFRSGLYTLDPFAKPGEKNFSYNVMATNVKQVRYAVWQVDP 330
            ++R++P +  +   V   + + +SG+TKG T YT+T+   + DI+GQ L K++  ++ +   +P+L +      TLDP     +K   ++V A N  ++   ++ V P
Sbjct:  418 MLRVKPEIPGMSVNVYG-DMISISGETKGQTTYTITLSAKLKDIFGQTLGKDQQVSIKVGKAEPRLFSTNQFFVTLDP----AQKKPVFSVYAINYSKLAVRIYSVQP 520
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BLAST of mRNA_M-pyrifera_M_contig119463.4022.1 vs. uniprot
Match: A0A353H3W3_9CHLR (MG2 domain-containing protein (Fragment) n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A353H3W3_9CHLR)

HSP 1 Score: 53.9 bits (128), Expect = 4.680e-6
Identity = 38/108 (35.19%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:    7 LVRMEPPVEDLECYVSSANTLCLSGDTKGDTHYTVTVCTTVVDIYGQHLPKEESFTVVIMPLKPQLTAFRSGLYTLDPFAKPGEKNFSYNVMATNVKQVRYAVWQVDP 330
            LV++ P +  L    S  NTL LSGDT G T YTVT+   + D +GQ L K+ + +  +   +P L      L TLDP +K  + N +  V+  N K++   ++ V P
Sbjct:  361 LVKVSPEIPGLTIN-SYGNTLVLSGDTTGQTTYTVTLSADLRDSFGQRLGKDATLSFRVGSAEPNLHGPDKLLVTLDPTSK--QANLALYVI--NYKKLAVKIYAVQP 463
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BLAST of mRNA_M-pyrifera_M_contig119463.4022.1 vs. uniprot
Match: A0A3B8HDY9_9DELT (MG2 domain-containing protein (Fragment) n=1 Tax=Syntrophobacteraceae bacterium TaxID=2052185 RepID=A0A3B8HDY9_9DELT)

HSP 1 Score: 50.8 bits (120), Expect = 5.620e-5
Identity = 29/90 (32.22%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:   61 NTLCLSGDTKGDTHYTVTVCTTVVDIYGQHLPKEESFTVVIMPLKPQLTAFRSGLYTLDPFAKPGEKNFSYNVMATNVKQVRYAVWQVDP 330
            +++ +SG+T+G T YTVT+  T+ DI+GQ L +E+  T  +   +P+L        TLDP +K       ++V A N  ++   ++ V P
Sbjct:  436 DSIVISGETRGQTTYTVTLSATLKDIFGQTLGREQRLTFKVGKAEPRLLGPDQVFVTLDPASKKPV----FSVYAINYAKLPVKIYTVQP 521
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BLAST of mRNA_M-pyrifera_M_contig119463.4022.1 vs. uniprot
Match: A0A1F8M2D1_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium RBG_13_50_21 TaxID=1797623 RepID=A0A1F8M2D1_9CHLR)

HSP 1 Score: 50.4 bits (119), Expect = 7.930e-5
Identity = 32/109 (29.36%), Postives = 56/109 (51.38%), Query Frame = 1 
Query:    7 LVRMEPPVEDLECYVSSANTLCLSGDTKGDTHYTVTVCTTVVDIYGQHLPKEESFTVVIMPLKPQLTAFRSGLYTLDPFA-KPGEKNFSYNVMATNVKQVRYAVWQVDP 330
            ++R+ P +  +   +    T+ +SG+TKG T YTVT+   + DI+GQ L ++E  T  +   +P+L        TLDP   KP      +++ A N  ++   ++ V P
Sbjct:  401 MLRVTPEIPGMVVNIFG-ETINISGETKGQTTYTVTLSAKLKDIFGQTLSRDEQLTFEVAQAEPRLFGTDQVFVTLDPAVDKP-----VFSLYAINYSKLDVKIYAVQP 503
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119463.4022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3M1SGM4_9BACT2.440e-827.27Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A363T0F6_9CHLR2.590e-627.78Uncharacterized protein n=1 Tax=Anaerolineales bac... [more]
A0A353H3W3_9CHLR4.680e-635.19MG2 domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A3B8HDY9_9DELT5.620e-532.22MG2 domain-containing protein (Fragment) n=1 Tax=S... [more]
A0A1F8M2D1_9CHLR7.930e-529.36Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119463contigM-pyrifera_M_contig119463:23..352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog5762.XP_002674150.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Alpha-2-macroglobulin family
EggNOG OGs2QS6U@2759,COG2373@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size330
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.829641-UTR-M-pyrifera_M_contig119463:22..371622815714.829641-UTR-M-pyrifera_M_contig119463:22..37Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119463 23..37 +
1692277535.2004273-UTR-M-pyrifera_M_contig119463:22..371692277535.2004273-UTR-M-pyrifera_M_contig119463:22..37Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119463 23..37 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.8467689-CDS-M-pyrifera_M_contig119463:37..3521622815714.8467689-CDS-M-pyrifera_M_contig119463:37..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119463 38..352 +
1692277535.2135332-CDS-M-pyrifera_M_contig119463:37..3521692277535.2135332-CDS-M-pyrifera_M_contig119463:37..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119463 38..352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119463.4022.1prot_M-pyrifera_M_contig119463.4022.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119463 38..352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119463.4022.1

>prot_M-pyrifera_M_contig119463.4022.1 ID=prot_M-pyrifera_M_contig119463.4022.1|Name=mRNA_M-pyrifera_M_contig119463.4022.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
MEPPVEDLECYVSSANTLCLSGDTKGDTHYTVTVCTTVVDIYGQHLPKEE
SFTVVIMPLKPQLTAFRSGLYTLDPFAKPGEKNFSYNVMATNVKQVRYAV
WQVDP
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mRNA from alignment at M-pyrifera_M_contig119463:23..352+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119463.4022.1 ID=mRNA_M-pyrifera_M_contig119463.4022.1|Name=mRNA_M-pyrifera_M_contig119463.4022.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig119463:23..352+ (Macrocystis pyrifera P11B4 male)
CCCGTGCTGGTGCGCATGGAGCCCCCTGTGGAGGACTTGGAGTGCTACGT
AAGCTCGGCAAACACTCTCTGCTTGTCTGGAGACACGAAGGGTGACACTC
ACTACACTGTGACAGTCTGCACCACTGTTGTGGACATCTATGGCCAGCAC
CTTCCCAAGGAGGAGAGCTTCACTGTCGTCATCATGCCGCTCAAGCCGCA
GCTGACTGCCTTCCGCTCGGGCCTCTACACCCTGGACCCGTTCGCGAAGC
CAGGCGAGAAGAACTTCTCCTACAACGTCATGGCTACCAACGTCAAGCAA
GTGAGGTATGCCGTCTGGCAGGTGGACCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119463:23..352+

>mRNA_M-pyrifera_M_contig119463.4022.1 ID=mRNA_M-pyrifera_M_contig119463.4022.1|Name=mRNA_M-pyrifera_M_contig119463.4022.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig119463:23..352+ (Macrocystis pyrifera P11B4 male)
ATGGAGCCCCCTGTGGAGGACTTGGAGTGCTACGTAAGCTCGGCAAACAC
TCTCTGCTTGTCTGGAGACACGAAGGGTGACACTCACTACACTGTGACAG
TCTGCACCACTGTTGTGGACATCTATGGCCAGCACCTTCCCAAGGAGGAG
AGCTTCACTGTCGTCATCATGCCGCTCAAGCCGCAGCTGACTGCCTTCCG
CTCGGGCCTCTACACCCTGGACCCGTTCGCGAAGCCAGGCGAGAAGAACT
TCTCCTACAACGTCATGGCTACCAACGTCAAGCAAGTGAGGTATGCCGTC
TGGCAGGTGGACCCTATGGAGCCCCCTGTGGAGGACTTGGAGTGCTACGT
AAGCTCGGCAAACACTCTCTGCTTGTCTGGAGACACGAAGGGTGACACTC
ACTACACTGTGACAGTCTGCACCACTGTTGTGGACATCTATGGCCAGCAC
CTTCCCAAGGAGGAGAGCTTCACTGTCGTCATCATGCCGCTCAAGCCGCA
GCTGACTGCCTTCCGCTCGGGCCTCTACACCCTGGACCCGTTCGCGAAGC
CAGGCGAGAAGAACTTCTCCTACAACGTCATGGCTACCAACGTCAAGCAA
GTGAGGTATGCCGTCTGGCAGGTGGACCCT
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