mRNA_M-pyrifera_M_contig119452.4017.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119452.4017.1
Unique NamemRNA_M-pyrifera_M_contig119452.4017.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119452.4017.1 vs. uniprot
Match: A0A0G4F4R8_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F4R8_VITBC)

HSP 1 Score: 88.6 bits (218), Expect = 1.130e-17
Identity = 54/116 (46.55%), Postives = 70/116 (60.34%), Query Frame = 1
Query:    1 GVDNLPAECPKDATQTFGDALLPFVESLSESDGTLPFSSQARSMPAEMHAAVIADQGKLTPNFEYIAKLRRESERLASRGDGGAGGGD-GADRRKLLLRGHLFDYSILNRVLDVAE 345
            GVD LP E   DATQ FGD LLPF++ L+ SDGT+P+ +    +PA +  A IA  GKLTP FEYIAK R  + R A++        D  A +  + L GHLFD  ++N  LD+ E
Sbjct:  379 GVDQLPTEFATDATQYFGDRLLPFIKPLAFSDGTVPYEA-ITDLPAPLKGACIAMDGKLTPLFEYIAKERMVTARAAAQKQQMDHRLDLSAPQLVVGLEGHLFDSGLINHALDLLE 493          
BLAST of mRNA_M-pyrifera_M_contig119452.4017.1 vs. uniprot
Match: A0A2R5G8Y9_9STRA (Saccharopine dehydrogenase NAD+, L-lysine-forming n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8Y9_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.290e-17
Identity = 61/156 (39.10%), Postives = 86/156 (55.13%), Query Frame = 1
Query:    1 GVDNLPAECPKDATQTFGDALLPFVESLSESDGTLPFSSQARSMPAEMHAAVIADQGKLTPNFEYIAKLRRE-----------SERLASRGDGGAGGGDGADRRKLLLRGHLFDYSILNRVLDVAEA-APECGFTLKSVDVGSGRDEDTTAVIELT 432
            GVD LP+E P++A+Q FGD LLPFV  L++   T        S+ AE+  A IADQG+L P + YI +LRRE            ER + + +G A          L L GHLFD  ++NR+LD+ EA +P   F +    VGS    ++T +++LT
Sbjct:  367 GVDILPSELPREASQHFGDYLLPFVAELAQGTPTA-------SLAAELQGACIADQGELRPRYTYIDQLRRERLRELNGLPLTDERSSLQIEGSA---------VLRLSGHLFDTGLVNRMLDIVEAQSPHGRFHIVECMVGS--QCESTMLLQLT 504          
BLAST of mRNA_M-pyrifera_M_contig119452.4017.1 vs. uniprot
Match: J9I4P0_9SPIT (Lysine-ketoglutarate reductase saccharopine dehydrogenase bifunctional enzyme, putative n=2 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9I4P0_9SPIT)

HSP 1 Score: 84.3 bits (207), Expect = 3.130e-16
Identity = 53/153 (34.64%), Postives = 81/153 (52.94%), Query Frame = 1
Query:    4 VDNLPAECPKDATQTFGDALLPFVESLSESDGTLPFSSQARSMPAEMHAAVIADQGKLTPNFEYIAKLRRESERLASRGDGGAGGGDGADRRKLLLR-----------GHLFDYSILNRVLDVAEAAPECGFTLKSVDVGSGRDEDTTAVIEL 429
            VD+LPAE PK+A+  FG+ LLPFV+ +  SD  LPF  Q   +P E+  AVI   GKLTP +EYI +LR+  ++     +        A+R+   LR           GHLFD    N+++D+ E   +  F +   +VG+   + +   ++L
Sbjct:  373 VDHLPAEMPKEASNHFGEKLLPFVKQVVNSDPNLPFEEQ-NDLPPEIRNAVICAHGKLTPAYEYIEELRKIRQQAKKHQEDYMNKVKEAERKTSSLRRGMRFATVVFQGHLFDTKFFNKLIDILEEN-KIDFRVVEWEVGNQSAKSSQVTLQL 523          
BLAST of mRNA_M-pyrifera_M_contig119452.4017.1 vs. uniprot
Match: A0A078ABY3_STYLE (Aminoadipic semialdehyde synthase n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078ABY3_STYLE)

HSP 1 Score: 83.2 bits (204), Expect = 7.930e-16
Identity = 48/125 (38.40%), Postives = 71/125 (56.80%), Query Frame = 1
Query:    4 VDNLPAECPKDATQTFGDALLPFVESLSESDGTLPFSSQARSMPAEMHAAVIADQGKLTPNFEYIAKLRRESERLASRGDGGAGGGDGADRRKLLLR-----------GHLFDYSILNRVLDVAE 345
            VD+LPAE PK+A+  FG+ L+PFV+++  SD TLPF  Q   +P E+  AVI   G+LTP++ YI +LRR  ++     +        A+R+   LR           GHLFD    N+++D+ E
Sbjct:  373 VDHLPAEMPKEASNHFGEKLMPFVKAIVNSDPTLPFDQQ-EDLPGEIKKAVICCHGELTPSYLYIEELRRIRQQAKKHQEDYMNKVKEAERKTSSLRRGMKFATVVFQGHLFDTKFFNKLIDILE 496          
BLAST of mRNA_M-pyrifera_M_contig119452.4017.1 vs. uniprot
Match: A0A2P6NNB6_9EUKA (Aminoadipic semialdehyde synthase (Fragment) n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NNB6_9EUKA)

HSP 1 Score: 83.2 bits (204), Expect = 8.330e-16
Identity = 40/75 (53.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    4 VDNLPAECPKDATQTFGDALLPFVESLS-ESDGTLPFSSQARSMPAEMHAAVIADQGKLTPNFEYIAKLRRESER 225
            VDN P E PK+AT+ FGD L+PF+E L  +SD +LPF  Q   +P E+H AVI   G+LTPNF+YI+++R+E+E+
Sbjct:  380 VDNFPTEFPKEATEYFGDHLMPFLEGLKIKSDVSLPFDQQ-NDLPPELHKAVITAHGELTPNFKYISEMRKENEK 453          
BLAST of mRNA_M-pyrifera_M_contig119452.4017.1 vs. uniprot
Match: A0A7S1WCJ8_ALECA (Hypothetical protein (Fragment) n=2 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WCJ8_ALECA)

HSP 1 Score: 82.4 bits (202), Expect = 1.050e-15
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = 1
Query:    4 VDNLPAECPKDATQTFGDALLPFVESLSESDGTLPFSS-QARSMPAEMHAAVIADQGKLTPNFEYIAKLRRESERLASRGDGGAGGGDGA---------DRR----KLLLRGHLFDYSILNRVLDVAEAAPECGFTLKSVDVGSGRDEDTTAVIEL 429
            VD+LP+E P++A++ FG+ LLPF+ SL+ +   L        ++P  +  AV+A+ G+L  +F+YI++LR  + R  +     A   D A          +R    KL   GHLFD  ++NRVLD  EAA      + +++VGS  D ++T  + L
Sbjct:  221 VDHLPSELPREASEHFGNCLLPFLPSLTAAHAPLVRGKGNTEALPPPVRGAVVAEGGQLAKDFQYISELRSVNARADAEAAAAAAAEDRALSFHGPHNLSQRPAAVKLDFSGHLFDTKVVNRVLDAVEAA-RARVEILNIEVGSTNDHESTMAVLL 375          
BLAST of mRNA_M-pyrifera_M_contig119452.4017.1 vs. uniprot
Match: A0A7S3YX99_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YX99_9EUKA)

HSP 1 Score: 81.3 bits (199), Expect = 4.060e-15
Identity = 46/129 (35.66%), Postives = 76/129 (58.91%), Query Frame = 1
Query:    1 GVDNLPAECPKDATQTFGDALLPFVESLSESDGTLPFSSQARSMPAEMHAAVIADQGKLTPNFEYIAKLRRESERLASRGDGGAGGGDGADRRKLLLRGHLFDYSILNRVLDVAEAAPECGFTLKSVDV 387
            G+D LP+E PK+A+++FGDAL+P + SL +++G          +P E+  AVIA+ G LT  + YIAK+R E++R  +      G     +  ++ L GHLFD  ++N+ L++ E+     F+   +DV
Sbjct:  446 GLDILPSELPKEASESFGDALMPLIPSLLDNEG----------LPPELERAVIAENGALTDQYAYIAKIRHEAQRAQNSVAPTKG-----ELARVHLEGHLFDTGLMNQALNLLESLG-ADFSFHDIDV 558          
BLAST of mRNA_M-pyrifera_M_contig119452.4017.1 vs. uniprot
Match: A0A8J5XSQ2_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XSQ2_DIALT)

HSP 1 Score: 80.9 bits (198), Expect = 5.530e-15
Identity = 58/158 (36.71%), Postives = 82/158 (51.90%), Query Frame = 1
Query:    1 GVDNLPAECPKDATQTFGDALLPFVESLSE-SDGTLPFSSQARS--------MPAEMHAAVIADQGKLTPNFEYIAKLRRESERLASRGDGGAGGGDGAD---RRKLLLRGHLFDYSILNRVLDVAEAA---PECGFTLKSVDVGSGRDEDTTAVIEL 429
            G D LPAE P++A++ FGDALLPFV +L++ +     F  Q  +        +P E+ AA++A  G LTP +EYIAK+R    R A+ G              R ++ L GHLFD  ++N  LD  E A   PE    L  V  G G    ++AV+ +
Sbjct:  400 GTDILPAELPREASEHFGDALLPFVPTLADRAVAARTFVDQLDTSVVGGPAGLPREVWAAIVACDGTLTPRYEYIAKIRAARARAAAAGGXXXXXXXXXXXXXRARVRLHGHLFDSGLINTALDTVEHAGGRPE----LLRVRAGLGAHGTSSAVLAI 553          
BLAST of mRNA_M-pyrifera_M_contig119452.4017.1 vs. uniprot
Match: A0A482SU31_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SU31_9ARCH)

HSP 1 Score: 79.0 bits (193), Expect = 2.540e-14
Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 GVDNLPAECPKDATQTFGDALLPFVESLSESDGTLPFSSQARSMPAEMHAAVIADQGKLTPNFEYIAKLRRESERLASRGDGGAGGGDGADRRKLLLRGHLFDYSILNRVLDVAEA 348
            GVDNLP E P+DA++ FG  LLP + ++  S G          +PAE+  A +   G+L P ++YIA+LR +++ L +  +        +   +L L GHLFD  ++NRVLDV E+
Sbjct:  400 GVDNLPTELPRDASEYFGKRLLPLIPTMLSSKG----DDDMTDLPAELRRACLTSAGELMPKWKYIARLREQAQVLTNASNKALP----SAVVRLELVGHLFDTGVINRVLDVLES 507          
BLAST of mRNA_M-pyrifera_M_contig119452.4017.1 vs. uniprot
Match: M2XVK7_GALSU (Bifunctional lysine-ketoglutarate reductase / saccharopine dehyrdogenase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XVK7_GALSU)

HSP 1 Score: 77.8 bits (190), Expect = 6.480e-14
Identity = 46/142 (32.39%), Postives = 71/142 (50.00%), Query Frame = 1
Query:    4 VDNLPAECPKDATQTFGDALLPFVESLSESDGTLPFSSQARSMPAEMHAAVIADQGKLTPNFEYIAKLRRESERLASRGDGGAGGGDGADRRKLLLRGHLFDYSILNRVLDVAEAAPECGFTLKSVDVGSGRDEDTTAVIEL 429
             DNLPAE  K++++ F ++L+ F+  L+              +P E+  A IA  GKLTP+F YI++LR   E   S              R++LL+GHLFD   +N  LD+ E    C F +    +G  R+  +T ++ L
Sbjct:  391 TDNLPAELAKESSEHFSNSLMSFLPKLATHVPNKSTELNFDDLPLELQRACIATNGKLTPHFSYISRLREIHEAKPSESQ--------RFHRQVLLKGHLFDSRAINEALDIIEEE-HCSFEILRWSIGQTRNMPSTLLLRL 523          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119452.4017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G4F4R8_VITBC1.130e-1746.55Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A2R5G8Y9_9STRA5.290e-1739.10Saccharopine dehydrogenase NAD+, L-lysine-forming ... [more]
J9I4P0_9SPIT3.130e-1634.64Lysine-ketoglutarate reductase saccharopine dehydr... [more]
A0A078ABY3_STYLE7.930e-1638.40Aminoadipic semialdehyde synthase n=1 Tax=Stylonyc... [more]
A0A2P6NNB6_9EUKA8.330e-1653.33Aminoadipic semialdehyde synthase (Fragment) n=1 T... [more]
A0A7S1WCJ8_ALECA1.050e-1533.97Hypothetical protein (Fragment) n=2 Tax=Alexandriu... [more]
A0A7S3YX99_9EUKA4.060e-1535.66Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A8J5XSQ2_DIALT5.530e-1536.71Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A482SU31_9ARCH2.540e-1437.93Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
M2XVK7_GALSU6.480e-1432.39Bifunctional lysine-ketoglutarate reductase / sacc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119452contigM-pyrifera_M_contig119452:38..469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score90.9
Seed ortholog evalue5.3e-16
Seed eggNOG ortholog192875.XP_004363749.1
Preferred nameAASS
KEGG rclassRC00215,RC00217,RC00225,RC01532
KEGG koko:K14157
KEGG ReactionR00716,R02313
KEGG Pathwayko00310,ko01100,ko01110,ko01130,map00310,map01100,map01110,map01130
KEGG ModuleM00032
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004753,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006520,GO:0006553,GO:0006554,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009067,GO:0009068,GO:0009085,GO:0009987,GO:0016043,GO:0016053,GO:0016054,GO:0016491,GO:0016645,GO:0016646,GO:0017144,GO:0019477,GO:0019752,GO:0019878,GO:0022607,GO:0031974,GO:0042737,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046395,GO:0046440,GO:0047130,GO:0047131,GO:0051259,GO:0051262,GO:0055114,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607
EggNOG free text desc.saccharopine dehydrogenase (NADP , L-lysine-forming) activity
EggNOG OGs38BKM@33154,COG1748@1,KOG0172@2759
EC1.5.1.8,1.5.1.9
COG Functional cat.E
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.474307-CDS-M-pyrifera_M_contig119452:37..4691622815714.474307-CDS-M-pyrifera_M_contig119452:37..469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119452 38..469 -
1692277535.0562088-CDS-M-pyrifera_M_contig119452:37..4691692277535.0562088-CDS-M-pyrifera_M_contig119452:37..469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119452 38..469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119452.4017.1prot_M-pyrifera_M_contig119452.4017.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119452 38..469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119452.4017.1

>prot_M-pyrifera_M_contig119452.4017.1 ID=prot_M-pyrifera_M_contig119452.4017.1|Name=mRNA_M-pyrifera_M_contig119452.4017.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
GVDNLPAECPKDATQTFGDALLPFVESLSESDGTLPFSSQARSMPAEMHA
AVIADQGKLTPNFEYIAKLRRESERLASRGDGGAGGGDGADRRKLLLRGH
LFDYSILNRVLDVAEAAPECGFTLKSVDVGSGRDEDTTAVIELT
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mRNA from alignment at M-pyrifera_M_contig119452:38..469-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119452.4017.1 ID=mRNA_M-pyrifera_M_contig119452.4017.1|Name=mRNA_M-pyrifera_M_contig119452.4017.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig119452:38..469- (Macrocystis pyrifera P11B4 male)
GGCGTGGACAACTTGCCGGCGGAGTGCCCGAAGGACGCGACGCAGACGTT TGGCGACGCGCTGCTGCCGTTCGTGGAGTCGCTGTCTGAGAGCGACGGCA CGCTGCCGTTCTCTTCGCAGGCGCGGTCGATGCCGGCGGAGATGCACGCG GCTGTGATCGCGGACCAGGGCAAGCTGACGCCCAACTTTGAGTACATTGC GAAGCTGCGGAGGGAGAGCGAGCGGCTGGCGTCTCGCGGCGATGGCGGCG CGGGCGGCGGCGACGGCGCGGACCGGCGCAAGCTGCTGCTGCGCGGCCAC CTGTTCGACTACAGCATCCTGAACCGTGTTCTGGACGTGGCGGAGGCTGC GCCCGAGTGCGGGTTCACGCTCAAGAGCGTGGACGTGGGCAGCGGCAGGG ACGAGGACACGACGGCGGTGATTGAGCTGACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119452:38..469-

>mRNA_M-pyrifera_M_contig119452.4017.1 ID=mRNA_M-pyrifera_M_contig119452.4017.1|Name=mRNA_M-pyrifera_M_contig119452.4017.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig119452:38..469- (Macrocystis pyrifera P11B4 male)
GGCGTGGACAACTTGCCGGCGGAGTGCCCGAAGGACGCGACGCAGACGTT
TGGCGACGCGCTGCTGCCGTTCGTGGAGTCGCTGTCTGAGAGCGACGGCA
CGCTGCCGTTCTCTTCGCAGGCGCGGTCGATGCCGGCGGAGATGCACGCG
GCTGTGATCGCGGACCAGGGCAAGCTGACGCCCAACTTTGAGTACATTGC
GAAGCTGCGGAGGGAGAGCGAGCGGCTGGCGTCTCGCGGCGATGGCGGCG
CGGGCGGCGGCGACGGCGCGGACCGGCGCAAGCTGCTGCTGCGCGGCCAC
CTGTTCGACTACAGCATCCTGAACCGTGTTCTGGACGTGGCGGAGGCTGC
GCCCGAGTGCGGGTTCACGCTCAAGAGCGTGGACGTGGGCAGCGGCAGGG
ACGAGGACACGACGGCGGTGATTGAGCTGACTGGCGTGGACAACTTGCCG
GCGGAGTGCCCGAAGGACGCGACGCAGACGTTTGGCGACGCGCTGCTGCC
GTTCGTGGAGTCGCTGTCTGAGAGCGACGGCACGCTGCCGTTCTCTTCGC
AGGCGCGGTCGATGCCGGCGGAGATGCACGCGGCTGTGATCGCGGACCAG
GGCAAGCTGACGCCCAACTTTGAGTACATTGCGAAGCTGCGGAGGGAGAG
CGAGCGGCTGGCGTCTCGCGGCGATGGCGGCGCGGGCGGCGGCGACGGCG
CGGACCGGCGCAAGCTGCTGCTGCGCGGCCACCTGTTCGACTACAGCATC
CTGAACCGTGTTCTGGACGTGGCGGAGGCTGCGCCCGAGTGCGGGTTCAC
GCTCAAGAGCGTGGACGTGGGCAGCGGCAGGGACGAGGACACGACGGCGG
TGATTGAGCTGACT
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