mRNA_M-pyrifera_M_contig119434.4010.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119434.4010.1
Unique NamemRNA_M-pyrifera_M_contig119434.4010.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119434.4010.1 vs. uniprot
Match: A0A1X7USG4_AMPQE (Uncharacterized protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7USG4_AMPQE)

HSP 1 Score: 90.1 bits (222), Expect = 2.570e-18
Identity = 48/131 (36.64%), Postives = 74/131 (56.49%), Query Frame = 1 
Query:    1 LENTVEQSDYYKLFEVEPDAELKHITRMRRELHKRFHPDNFTSNPAGKAVAISTMMTINEVFTNVFKNPDARVLYDKLCLYRAEYANLLRTADPMLQRAATNLSILAKALRKANMPAALNTEVQQVLVVIK 393
            L     QSDYY L  V P A+ + ++R RRE+  + HPD+FT++P  +  A   ++ IN+ +++V  N   R LYD+L  YR +Y  +L    P L  A   LS L  +++KA  P AL  E+Q  + +I+
Sbjct:  481 LTRKTRQSDYYGLLGVLPTADQEELSRARREITVKLHPDHFTNDPIKQEKAQERLIIINQAYSDVLSNKTNRELYDQLVRYREKYHRILEQTGPSLDTAKMKLSSLRSSMKKARFPMALLEELQLAIRLIE 611
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BLAST of mRNA_M-pyrifera_M_contig119434.4010.1 vs. uniprot
Match: A0A0L0DME5_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DME5_THETB)

HSP 1 Score: 89.7 bits (221), Expect = 3.590e-18
Identity = 51/128 (39.84%), Postives = 76/128 (59.38%), Query Frame = 1 
Query:   22 SDYYKLFEV-EPDAELKHITRMRRELHKRFHPDNFTSNPAGKAVAISTMMTINEVFTNVFKNPDARVLYDKLCLYRAEYANLLRTA--DPMLQRAATNLSILAKALRKANMPAALNTEVQQVLVVIKK 396
            +DYY LF + +P A L  I + RREL +++HPD+   + A +A A   +  IN  FTNV +NP  R+LY+KLC YRA Y  +   A     L+ AA+NL +L K +   NMP  L  E++  L ++++
Sbjct:  592 NDYYALFGIGDPRAPLAAIAKARRELTQKYHPDHQKDDTA-RASATEQLQRINSAFTNVLRNPQTRLLYNKLCKYRASYKQMTLGALNSDQLRLAASNLKVLLKDVEAENMPMDLIAEIRLCLGIVQR 718
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BLAST of mRNA_M-pyrifera_M_contig119434.4010.1 vs. uniprot
Match: A0A1X7STR6_AMPQE (J domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7STR6_AMPQE)

HSP 1 Score: 65.1 bits (157), Expect = 9.530e-10
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:    1 LENTVEQSDYYKLFEVEPDAELKHITRMRRELHKRFHPDNFTSNPAGKAVAISTMMTINEVFTNVFKNPDARVLYDKLCLYR 246
            L    +QSDYY L  V P A+ + ++R RRE+  + HPD FT++P  +  A   ++ IN+ +++V  N   R LYD+L  YR
Sbjct:  217 LTRKTKQSDYYGLLGVLPTADQEELSRARREITVKLHPDYFTNDPIKQEKAQERLIIINQAYSDVLSNKTNRELYDQLVRYR 298
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119434.4010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1X7USG4_AMPQE2.570e-1836.64Uncharacterized protein n=2 Tax=Amphimedon queensl... [more]
A0A0L0DME5_THETB3.590e-1839.84Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A1X7STR6_AMPQE9.530e-1039.02J domain-containing protein n=1 Tax=Amphimedon que... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119434contigM-pyrifera_M_contig119434:2..418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.194235-CDS-M-pyrifera_M_contig119434:1..4181622815714.194235-CDS-M-pyrifera_M_contig119434:1..418Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119434 2..418 +
1692277534.9675508-CDS-M-pyrifera_M_contig119434:1..4181692277534.9675508-CDS-M-pyrifera_M_contig119434:1..418Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119434 2..418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119434.4010.1prot_M-pyrifera_M_contig119434.4010.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119434 2..418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119434.4010.1

>prot_M-pyrifera_M_contig119434.4010.1 ID=prot_M-pyrifera_M_contig119434.4010.1|Name=mRNA_M-pyrifera_M_contig119434.4010.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
LENTVEQSDYYKLFEVEPDAELKHITRMRRELHKRFHPDNFTSNPAGKAV
AISTMMTINEVFTNVFKNPDARVLYDKLCLYRAEYANLLRTADPMLQRAA
TNLSILAKALRKANMPAALNTEVQQVLVVIKKSRGISP*
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mRNA from alignment at M-pyrifera_M_contig119434:2..418+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119434.4010.1 ID=mRNA_M-pyrifera_M_contig119434.4010.1|Name=mRNA_M-pyrifera_M_contig119434.4010.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig119434:2..418+ (Macrocystis pyrifera P11B4 male)
CTTGAGAACACCGTGGAGCAGAGCGACTACTACAAGCTGTTCGAGGTCGA
GCCCGACGCAGAGCTCAAGCACATCACCCGCATGCGACGAGAGCTGCACA
AGCGCTTCCACCCCGACAACTTCACCAGCAACCCCGCTGGCAAGGCGGTG
GCCATCTCCACGATGATGACGATCAACGAGGTCTTCACCAACGTCTTCAA
GAACCCTGACGCGCGCGTGCTCTACGACAAGCTGTGCCTCTACAGGGCGG
AGTATGCCAACCTGCTCAGGACAGCAGACCCCATGCTGCAGCGGGCCGCC
ACCAACCTCTCCATTCTGGCCAAGGCCTTGCGCAAGGCCAACATGCCAGC
CGCACTCAACACCGAGGTGCAGCAAGTGCTCGTCGTCATCAAGAAGAGCA
GAGGCATTTCTCCTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119434:2..418+

>mRNA_M-pyrifera_M_contig119434.4010.1 ID=mRNA_M-pyrifera_M_contig119434.4010.1|Name=mRNA_M-pyrifera_M_contig119434.4010.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig119434:2..418+ (Macrocystis pyrifera P11B4 male)
CTTGAGAACACCGTGGAGCAGAGCGACTACTACAAGCTGTTCGAGGTCGA
GCCCGACGCAGAGCTCAAGCACATCACCCGCATGCGACGAGAGCTGCACA
AGCGCTTCCACCCCGACAACTTCACCAGCAACCCCGCTGGCAAGGCGGTG
GCCATCTCCACGATGATGACGATCAACGAGGTCTTCACCAACGTCTTCAA
GAACCCTGACGCGCGCGTGCTCTACGACAAGCTGTGCCTCTACAGGGCGG
AGTATGCCAACCTGCTCAGGACAGCAGACCCCATGCTGCAGCGGGCCGCC
ACCAACCTCTCCATTCTGGCCAAGGCCTTGCGCAAGGCCAACATGCCAGC
CGCACTCAACACCGAGGTGCAGCAAGTGCTCGTCGTCATCAAGAAGAGCA
GAGGCATTTCTCCTTAGCTTGAGAACACCGTGGAGCAGAGCGACTACTAC
AAGCTGTTCGAGGTCGAGCCCGACGCAGAGCTCAAGCACATCACCCGCAT
GCGACGAGAGCTGCACAAGCGCTTCCACCCCGACAACTTCACCAGCAACC
CCGCTGGCAAGGCGGTGGCCATCTCCACGATGATGACGATCAACGAGGTC
TTCACCAACGTCTTCAAGAACCCTGACGCGCGCGTGCTCTACGACAAGCT
GTGCCTCTACAGGGCGGAGTATGCCAACCTGCTCAGGACAGCAGACCCCA
TGCTGCAGCGGGCCGCCACCAACCTCTCCATTCTGGCCAAGGCCTTGCGC
AAGGCCAACATGCCAGCCGCACTCAACACCGAGGTGCAGCAAGTGCTCGT
CGTCATCAAGAAGAGCAGAGGCATTTCTCCTTAG
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