mRNA_M-pyrifera_M_contig119430.4009.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: Q54TS3_DICDI (COBW domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54TS3_DICDI) HSP 1 Score: 97.4 bits (241), Expect = 9.380e-22 Identity = 44/95 (46.32%), Postives = 68/95 (71.58%), Query Frame = 1
Query: 1 IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQ 285
I TVC+T + +DL + RW+G L W K + R KG +S++G D+KY LQGV+ATFE+ PS + WS+ E+R +K+VLIG+SL++ +L+ +F+
Sbjct: 299 INTVCITEDGDIDLTEFNRWIGNLLWEEKKDC-IFRCKGLISVKGQDEKYILQGVYATFEVLPSGLLWSKDEKRHNKIVLIGESLNQNELEQSFK 392
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: Q9FUB1_ARATH (PRLI-interacting factor L (Fragment) n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9FUB1_ARATH) HSP 1 Score: 87.8 bits (216), Expect = 5.360e-19 Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 1
Query: 1 IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQEC 291
+G+V + E +DLEK WLG L + N+ D+ RMKG LS+Q D+++ QGVH FE SP ++ W + E R +K+V IGK+L+R +L+ F+ C
Sbjct: 150 VGSVSIVCEGDLDLEKANMWLGALLYQRNE--DIYRMKGILSVQDMDERFVFQGVHEIFEGSPDRL-WRKDETRTNKIVFIGKNLNREELEMGFRAC 243
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: A0A565ARE2_9BRAS (CobW C-terminal domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565ARE2_9BRAS) HSP 1 Score: 83.6 bits (205), Expect = 1.360e-16 Identity = 40/97 (41.24%), Postives = 63/97 (64.95%), Query Frame = 1
Query: 1 IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQEC 291
+ +V + E +DLEK WLG L + ++ D+ RMKG LS+Q ++++ QGVH FE SP ++ W + E+R +K+V IGKSL+R +L+ F+ C
Sbjct: 361 VSSVSIVCEGDLDLEKANMWLGALLYQRSE--DIYRMKGILSVQDMEERFVFQGVHEIFEGSPDRL-WRKDEKRINKIVFIGKSLNREELEMGFKAC 454
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: V4L658_EUTSA (CobW C-terminal domain-containing protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4L658_EUTSA) HSP 1 Score: 82.4 bits (202), Expect = 3.440e-16 Identity = 40/97 (41.24%), Postives = 62/97 (63.92%), Query Frame = 1
Query: 1 IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQEC 291
+ +V + E +DLEK WLG L + ++ D+ RMKG LS+Q ++++ QGVH FE SP ++ W + E R +K+V IGKSL+R +L+ F+ C
Sbjct: 354 VASVSIVCEGDLDLEKANMWLGALLYQRSE--DIYRMKGILSVQDMEERFVFQGVHEIFEGSPDRL-WRKDETRINKIVFIGKSLNREELEMGFRAC 447
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: A0A068UTZ4_COFCA (CobW C-terminal domain-containing protein n=10 Tax=Coffea TaxID=13442 RepID=A0A068UTZ4_COFCA) HSP 1 Score: 78.6 bits (192), Expect = 7.710e-15 Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 1
Query: 1 IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQEC 291
+ +V + SE T+DL++V WL L K+ D+ RMKG LS+ G +++Y QGVH+T + P + W GE+R +KLV IG++L L+ F+ C
Sbjct: 330 VSSVSIVSEGTLDLDEVDDWLERLL--EEKEDDLYRMKGVLSVTGSEERYVFQGVHSTLDGCPGKT-WGPGEKRVNKLVFIGRNLDETALRKGFKGC 423
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: D8RAB8_SELML (CobW C-terminal domain-containing protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RAB8_SELML) HSP 1 Score: 77.0 bits (188), Expect = 2.900e-14 Identity = 38/97 (39.18%), Postives = 60/97 (61.86%), Query Frame = 1
Query: 1 IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQEC 291
+ +V + E +DLEK+ WLG L + + D+ RMKG LSI+ +++ QGVHA +E + + W E+R +KLV IGK+L+ A+L+ F +C
Sbjct: 375 VSSVSIMCEGNLDLEKIDTWLGDLL--DERSEDLYRMKGILSIEDCKERFVFQGVHAVYEGTMDR-EWGPNEKRQNKLVFIGKNLNEAELKQGFMDC 468
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: A0A1Q9PPV8_ALKPS (Cobalamin biosynthesis protein CobW n=1 Tax=Alkalihalophilus pseudofirmus TaxID=79885 RepID=A0A1Q9PPV8_ALKPS) HSP 1 Score: 76.3 bits (186), Expect = 3.320e-14 Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 1
Query: 1 IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQEC 291
+ ++ T E +D+ KV RW+ L K D++R KG L+I+G ++ QG+H F P + WSEGE+R ++LV IG++L + +L+ F+EC
Sbjct: 232 VSSIAFTEERPLDMSKVDRWMSYLV--QEKGEDLLRYKGILNIEGMKERIVFQGLHMLFTGKPDK-KWSEGEKRKTELVFIGRNLDKIELENQFREC 325
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: A0A7R9TNW9_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TNW9_9VIRI) HSP 1 Score: 76.6 bits (187), Expect = 3.770e-14 Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = 1
Query: 34 MDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQEC 291
+DL+ + WL + N+ D+ RMKG LSIQ D+K+ QGVH FE P++ W EGE R S+LV IGK L A+L A F+ C
Sbjct: 348 LDLDAINAWLERMLTERNE--DIFRMKGILSIQDVDEKFVFQGVHQLFEGLPAE-EWGEGEERVSRLVFIGKELDEAELTAEFESC 430
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: A0A7S0YDA2_9CHLO (Hypothetical protein n=2 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0YDA2_9CHLO) HSP 1 Score: 75.9 bits (185), Expect = 7.490e-14 Identity = 39/97 (40.21%), Postives = 59/97 (60.82%), Query Frame = 1
Query: 1 IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQEC 291
+ +V + + MD+EK+ LG L + D+ RMKG LSIQG ++++ QGVH FE P + W++ E+R K+V IGK L+R D + AF+ C
Sbjct: 373 VSSVSLVFDGNMDMEKLNYSLGYLL--TERSEDIFRMKGILSIQGREERFVYQGVHQIFEGLPDRY-WNKDEKRQCKMVFIGKYLNREDFEEAFRNC 466
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: A0A485KIV0_9STRA (Aste57867_7876 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KIV0_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 2.320e-13 Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = 1
Query: 1 IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQEC 291
+ + C+T E ++++ V WLG L W + R+KG LS+ GDD+K+ LQGV F+++PS+ W++ E R +K+V IG L LQ+ Q C
Sbjct: 233 VTSTCITCTEILNVKAVEYWLGSLLWEETTMC-IYRIKGILSVSGDDRKHILQGVQDLFDITPSE-KWADEEPRLTKIVFIGIGLDSPALQSGIQGC 327 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig119430.4009.1 >prot_M-pyrifera_M_contig119430.4009.1 ID=prot_M-pyrifera_M_contig119430.4009.1|Name=mRNA_M-pyrifera_M_contig119430.4009.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYback to top mRNA from alignment at M-pyrifera_M_contig119430:6..323+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig119430.4009.1 ID=mRNA_M-pyrifera_M_contig119430.4009.1|Name=mRNA_M-pyrifera_M_contig119430.4009.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig119430:6..323+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig119430:6..323+ >mRNA_M-pyrifera_M_contig119430.4009.1 ID=mRNA_M-pyrifera_M_contig119430.4009.1|Name=mRNA_M-pyrifera_M_contig119430.4009.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig119430:6..323+ (Macrocystis pyrifera P11B4 male)back to top |