mRNA_M-pyrifera_M_contig119419.4002.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119419.4002.1
Unique NamemRNA_M-pyrifera_M_contig119419.4002.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119419.4002.1 vs. uniprot
Match: A0A523PFJ6_9PROT (Uncharacterized protein n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523PFJ6_9PROT)

HSP 1 Score: 129 bits (325), Expect = 4.590e-36
Identity = 55/99 (55.56%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:    1 LDVVDANTQSRTPDTALLRIDLNANENLYRFFLYGLKIEIVQRIPLNNPAGGYVSQVIWQHGQTGMVMPTDMRKLNTIVSELLAKFLDDYHAQNPQQLS 297
            +DVVD +     PD AL+RI LNANEN YRF++YG+ IE+ Q++ LNNPAGG++S  IW+ G+TG++MPTD+R++N  ++ELLA+F+DDY +QNP+++S
Sbjct:   79 IDVVDLDFAKSHPDAALMRIKLNANENQYRFYMYGISIELKQKLSLNNPAGGFISATIWRQGKTGVIMPTDLRQINDRIAELLAEFIDDYRSQNPKRVS 177
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119419.4002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A523PFJ6_9PROT4.590e-3655.56Uncharacterized protein n=2 Tax=Proteobacteria bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119419contigM-pyrifera_M_contig119419:236..544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.8094523-CDS-M-pyrifera_M_contig119419:235..5441622815713.8094523-CDS-M-pyrifera_M_contig119419:235..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119419 236..544 -
1692277534.7711635-CDS-M-pyrifera_M_contig119419:235..5441692277534.7711635-CDS-M-pyrifera_M_contig119419:235..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119419 236..544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119419.4002.1prot_M-pyrifera_M_contig119419.4002.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119419 236..544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119419.4002.1

>prot_M-pyrifera_M_contig119419.4002.1 ID=prot_M-pyrifera_M_contig119419.4002.1|Name=mRNA_M-pyrifera_M_contig119419.4002.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
LDVVDANTQSRTPDTALLRIDLNANENLYRFFLYGLKIEIVQRIPLNNPA
GGYVSQVIWQHGQTGMVMPTDMRKLNTIVSELLAKFLDDYHAQNPQQLSG
LH*
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mRNA from alignment at M-pyrifera_M_contig119419:236..544-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119419.4002.1 ID=mRNA_M-pyrifera_M_contig119419.4002.1|Name=mRNA_M-pyrifera_M_contig119419.4002.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig119419:236..544- (Macrocystis pyrifera P11B4 male)
CTCGACGTCGTCGACGCCAACACGCAATCGCGCACTCCCGACACCGCGCT
GTTACGCATCGATCTGAACGCAAACGAGAATTTGTACCGCTTCTTTCTGT
ACGGCCTGAAGATTGAAATCGTGCAGAGAATTCCGCTGAACAACCCGGCC
GGCGGCTACGTGAGCCAGGTTATCTGGCAACACGGGCAAACCGGGATGGT
GATGCCGACGGATATGCGTAAACTCAACACCATCGTGTCCGAGTTACTCG
CGAAATTTCTCGACGACTACCACGCGCAAAACCCGCAGCAGCTGTCGGGT
TTACATTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119419:236..544-

>mRNA_M-pyrifera_M_contig119419.4002.1 ID=mRNA_M-pyrifera_M_contig119419.4002.1|Name=mRNA_M-pyrifera_M_contig119419.4002.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig119419:236..544- (Macrocystis pyrifera P11B4 male)
CTCGACGTCGTCGACGCCAACACGCAATCGCGCACTCCCGACACCGCGCT
GTTACGCATCGATCTGAACGCAAACGAGAATTTGTACCGCTTCTTTCTGT
ACGGCCTGAAGATTGAAATCGTGCAGAGAATTCCGCTGAACAACCCGGCC
GGCGGCTACGTGAGCCAGGTTATCTGGCAACACGGGCAAACCGGGATGGT
GATGCCGACGGATATGCGTAAACTCAACACCATCGTGTCCGAGTTACTCG
CGAAATTTCTCGACGACTACCACGCGCAAAACCCGCAGCAGCTGTCGGGT
TTACATTAGCTCGACGTCGTCGACGCCAACACGCAATCGCGCACTCCCGA
CACCGCGCTGTTACGCATCGATCTGAACGCAAACGAGAATTTGTACCGCT
TCTTTCTGTACGGCCTGAAGATTGAAATCGTGCAGAGAATTCCGCTGAAC
AACCCGGCCGGCGGCTACGTGAGCCAGGTTATCTGGCAACACGGGCAAAC
CGGGATGGTGATGCCGACGGATATGCGTAAACTCAACACCATCGTGTCCG
AGTTACTCGCGAAATTTCTCGACGACTACCACGCGCAAAACCCGCAGCAG
CTGTCGGGTTTACATTAG
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