mRNA_M-pyrifera_M_contig119354.3994.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119354.3994.1
Unique NamemRNA_M-pyrifera_M_contig119354.3994.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119354.3994.1 vs. uniprot
Match: A0A7S2XZF9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZF9_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.720e-39
Identity = 60/90 (66.67%), Postives = 77/90 (85.56%), Query Frame = 1 
Query:   13 QYLYVCHAEANAILNRNAADLRGSRMYVALFPCNECSKLIIQSGIEEVVFTSDKYHETPSMTASRRMFDLAGVRYRQHTPRDPCISIHFA 282
            +Y YVCHAE NAI+N+N+ADLRG  +YVALFPCNEC+KLI+QSGI+EVV+ SDKYH++ SMTASRR+ D+A V YR+H P+D  I+I F+
Sbjct:   23 KYPYVCHAEMNAIMNKNSADLRGCTIYVALFPCNECAKLILQSGIKEVVYLSDKYHDSESMTASRRLMDMANVLYRKHVPKDTTITIDFS 112
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BLAST of mRNA_M-pyrifera_M_contig119354.3994.1 vs. uniprot
Match: A0A0D2VZ05_CAPO3 (Deoxycytidylate deaminase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VZ05_CAPO3)

HSP 1 Score: 135 bits (340), Expect = 2.400e-38
Identity = 56/93 (60.22%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:    1 PFSPQYLYVCHAEANAILNRNAADLRGSRMYVALFPCNECSKLIIQSGIEEVVFTSDKYHETPSMTASRRMFDLAGVRYRQHTPRDPCISIHF 279
            P   +Y+YVCHAE NA+LN+NA+D++G  +YVALFPCNEC+K+IIQSGI+EV++ SDKYH+ P    SRR+FD+AG++YRQH P+   I+I F
Sbjct:   96 PLDTKYMYVCHAELNAVLNKNASDVKGCTIYVALFPCNECAKIIIQSGIKEVIYKSDKYHDRPEFVVSRRLFDMAGIKYRQHIPKMKQITIDF 188
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BLAST of mRNA_M-pyrifera_M_contig119354.3994.1 vs. uniprot
Match: A0A852KR79_UROIN (DCTD deaminase (Fragment) n=1 Tax=Urocolius indicus TaxID=458196 RepID=A0A852KR79_UROIN)

HSP 1 Score: 134 bits (336), Expect = 6.690e-38
Identity = 60/89 (67.42%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:   13 QYLYVCHAEANAILNRNAADLRGSRMYVALFPCNECSKLIIQSGIEEVVFTSDKYHETPSMTASRRMFDLAGVRYRQHTPRDPCISIHF 279
            +YLYVCHAE NAI+N+N+AD++G  MYVALFPCNEC+KLIIQ+GI+EV+F SDKYH+T  MTA+RRMFDLAG+ YR+  P+   I I F
Sbjct:   79 KYLYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDTVEMTAARRMFDLAGITYREFKPKCKKIIIDF 167
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BLAST of mRNA_M-pyrifera_M_contig119354.3994.1 vs. uniprot
Match: H3B5V9_LATCH (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3B5V9_LATCH)

HSP 1 Score: 134 bits (337), Expect = 9.060e-38
Identity = 59/89 (66.29%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:   13 QYLYVCHAEANAILNRNAADLRGSRMYVALFPCNECSKLIIQSGIEEVVFTSDKYHETPSMTASRRMFDLAGVRYRQHTPRDPCISIHF 279
            +Y YVCHAE NAI+N+N+AD++G  MYVALFPCNEC+KLIIQ+GI+EV+F SDKYH TP MTASR +FD+AG++YRQ  P+   I+I F
Sbjct:   90 KYPYVCHAELNAIMNKNSADVKGCAMYVALFPCNECAKLIIQAGIKEVIFMSDKYHSTPEMTASRLLFDMAGIKYRQFVPKVSKITIDF 178
[Close]
BLAST of mRNA_M-pyrifera_M_contig119354.3994.1 vs. uniprot
Match: A0A7L0ID30_PIPCL (DCTD deaminase (Fragment) n=1 Tax=Piprites chloris TaxID=114369 RepID=A0A7L0ID30_PIPCL)

HSP 1 Score: 133 bits (335), Expect = 9.480e-38
Identity = 61/89 (68.54%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:   13 QYLYVCHAEANAILNRNAADLRGSRMYVALFPCNECSKLIIQSGIEEVVFTSDKYHETPSMTASRRMFDLAGVRYRQHTPRDPCISIHF 279
            +YLYVCHAE NAI+N+N+AD++G  MYVALFPCNEC+KLIIQ+GI+EV+F SDKYH+T  MTA+RRMFDLAG+ YRQ  P+   I I F
Sbjct:   79 KYLYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDTIEMTAARRMFDLAGIIYRQFKPKCNKIIIDF 167
[Close]
BLAST of mRNA_M-pyrifera_M_contig119354.3994.1 vs. uniprot
Match: A0A7K6BAU0_UPUEP (DCTD deaminase (Fragment) n=3 Tax=Aves TaxID=8782 RepID=A0A7K6BAU0_UPUEP)

HSP 1 Score: 133 bits (335), Expect = 9.480e-38
Identity = 60/89 (67.42%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:   13 QYLYVCHAEANAILNRNAADLRGSRMYVALFPCNECSKLIIQSGIEEVVFTSDKYHETPSMTASRRMFDLAGVRYRQHTPRDPCISIHF 279
            +Y YVCHAE NAI+N+N+AD++G  MYVALFPCNEC+KLIIQ+GI+EV+F SDKYH+T  MTA+RRMFDLAG+RYR+  P+   I I F
Sbjct:   79 KYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDTTEMTAARRMFDLAGIRYREFKPKCNKIIIDF 167
[Close]
BLAST of mRNA_M-pyrifera_M_contig119354.3994.1 vs. uniprot
Match: A0A6P4Z2A7_BRABE (deoxycytidylate deaminase-like n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4Z2A7_BRABE)

HSP 1 Score: 135 bits (339), Expect = 1.020e-37
Identity = 60/89 (67.42%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:   13 QYLYVCHAEANAILNRNAADLRGSRMYVALFPCNECSKLIIQSGIEEVVFTSDKYHETPSMTASRRMFDLAGVRYRQHTPRDPCISIHF 279
            +Y YVCHAE NAILN+N+AD++G +MYVALFPCNEC+KL+IQSGI E++F SDKYH TP MTASRR+ DLAGV+Y Q  P+   I+I F
Sbjct:  127 KYPYVCHAELNAILNKNSADVKGCKMYVALFPCNECAKLVIQSGIREIMFVSDKYHHTPEMTASRRLLDLAGVKYTQFVPKRQKITIAF 215
[Close]
BLAST of mRNA_M-pyrifera_M_contig119354.3994.1 vs. uniprot
Match: A0A7K4XJ42_REGSA (DCTD deaminase (Fragment) n=1 Tax=Regulus satrapa TaxID=13245 RepID=A0A7K4XJ42_REGSA)

HSP 1 Score: 132 bits (333), Expect = 1.910e-37
Identity = 59/89 (66.29%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:   13 QYLYVCHAEANAILNRNAADLRGSRMYVALFPCNECSKLIIQSGIEEVVFTSDKYHETPSMTASRRMFDLAGVRYRQHTPRDPCISIHF 279
            +YLYVCHAE NAI+N+N+AD++G  +YVALFPCNEC+KLIIQ+GI+EV+F SDKYH+T  MTA+RRMFDLAG+ YR+  P+   I I F
Sbjct:   79 KYLYVCHAELNAIMNKNSADVKGCSIYVALFPCNECAKLIIQAGIKEVIFMSDKYHDTTEMTAARRMFDLAGIVYREFKPKSNKIIIDF 167
[Close]
BLAST of mRNA_M-pyrifera_M_contig119354.3994.1 vs. uniprot
Match: A0A803SV51_ANOCA (CMP/dCMP-type deaminase domain-containing protein n=8 Tax=Iguania TaxID=8511 RepID=A0A803SV51_ANOCA)

HSP 1 Score: 133 bits (334), Expect = 2.060e-37
Identity = 60/89 (67.42%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:   13 QYLYVCHAEANAILNRNAADLRGSRMYVALFPCNECSKLIIQSGIEEVVFTSDKYHETPSMTASRRMFDLAGVRYRQHTPRDPCISIHF 279
            +Y YVCHAE NAI+N+N+AD++G  MYVALFPCNEC+KLIIQ+GI+EV+F SDKYH+TP MTASRR+FDLAG+ YR+  P+   I I F
Sbjct:   94 KYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDTPEMTASRRLFDLAGIIYRKFKPKCNKIVIDF 182
[Close]
BLAST of mRNA_M-pyrifera_M_contig119354.3994.1 vs. uniprot
Match: UPI001891C564 (deoxycytidylate deaminase n=2 Tax=Serrasalmidae TaxID=42495 RepID=UPI001891C564)

HSP 1 Score: 133 bits (334), Expect = 2.510e-37
Identity = 60/89 (67.42%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:   13 QYLYVCHAEANAILNRNAADLRGSRMYVALFPCNECSKLIIQSGIEEVVFTSDKYHETPSMTASRRMFDLAGVRYRQHTPRDPCISIHF 279
            +Y YVCHAE NAI+N+N+AD++G  MYVALFPCNEC+KLIIQ+GI+EV++ SDKYH+TP MTASRR+  LAGV+YRQ TP+   I I F
Sbjct:   93 KYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEVIYLSDKYHDTPEMTASRRLLKLAGVQYRQFTPKRGQIIIDF 181
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119354.3994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2XZF9_9STRA1.720e-3966.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0D2VZ05_CAPO32.400e-3860.22Deoxycytidylate deaminase n=2 Tax=Capsaspora owcza... [more]
A0A852KR79_UROIN6.690e-3867.42DCTD deaminase (Fragment) n=1 Tax=Urocolius indicu... [more]
H3B5V9_LATCH9.060e-3866.29CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A7L0ID30_PIPCL9.480e-3868.54DCTD deaminase (Fragment) n=1 Tax=Piprites chloris... [more]
A0A7K6BAU0_UPUEP9.480e-3867.42DCTD deaminase (Fragment) n=3 Tax=Aves TaxID=8782 ... [more]
A0A6P4Z2A7_BRABE1.020e-3767.42deoxycytidylate deaminase-like n=2 Tax=Branchiosto... [more]
A0A7K4XJ42_REGSA1.910e-3766.29DCTD deaminase (Fragment) n=1 Tax=Regulus satrapa ... [more]
A0A803SV51_ANOCA2.060e-3767.42CMP/dCMP-type deaminase domain-containing protein ... [more]
UPI001891C5642.510e-3767.42deoxycytidylate deaminase n=2 Tax=Serrasalmidae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119354contigM-pyrifera_M_contig119354:159..440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score135.6
Seed ortholog evalue1.2e-29
Seed eggNOG ortholog192875.XP_004343364.1
Preferred nameDCTD
KEGG rclassRC00074
KEGG koko:K01493
KEGG ReactionR01663
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00429
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004132,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006231,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009157,GO:0009162,GO:0009165,GO:0009176,GO:0009177,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015949,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019239,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046073,GO:0046078,GO:0046385,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.dCMP deaminase activity
EggNOG OGs38HPY@33154,COG2131@1,KOG3127@2759
EC3.5.4.12
COG Functional cat.F
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.4569695-CDS-M-pyrifera_M_contig119354:158..4401622815713.4569695-CDS-M-pyrifera_M_contig119354:158..440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119354 159..440 +
1692277534.6080205-CDS-M-pyrifera_M_contig119354:158..4401692277534.6080205-CDS-M-pyrifera_M_contig119354:158..440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119354 159..440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119354.3994.1prot_M-pyrifera_M_contig119354.3994.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119354 159..440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119354.3994.1

>prot_M-pyrifera_M_contig119354.3994.1 ID=prot_M-pyrifera_M_contig119354.3994.1|Name=mRNA_M-pyrifera_M_contig119354.3994.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
PFSPQYLYVCHAEANAILNRNAADLRGSRMYVALFPCNECSKLIIQSGIE
EVVFTSDKYHETPSMTASRRMFDLAGVRYRQHTPRDPCISIHFA
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mRNA from alignment at M-pyrifera_M_contig119354:159..440+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119354.3994.1 ID=mRNA_M-pyrifera_M_contig119354.3994.1|Name=mRNA_M-pyrifera_M_contig119354.3994.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig119354:159..440+ (Macrocystis pyrifera P11B4 male)
CCTTTTTCCCCGCAGTACTTGTACGTTTGCCATGCTGAGGCGAATGCGAT
TCTGAACCGGAATGCTGCCGACTTGCGGGGGAGTCGGATGTACGTGGCGT
TGTTCCCTTGCAACGAGTGCTCGAAGCTGATCATCCAGAGTGGGATCGAG
GAGGTGGTGTTCACCAGCGACAAGTACCACGAAACGCCTTCCATGACTGC
CTCAAGGCGCATGTTCGACCTTGCAGGAGTGCGCTATCGCCAACACACCC
CAAGAGACCCCTGCATCTCCATCCACTTTGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119354:159..440+

>mRNA_M-pyrifera_M_contig119354.3994.1 ID=mRNA_M-pyrifera_M_contig119354.3994.1|Name=mRNA_M-pyrifera_M_contig119354.3994.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig119354:159..440+ (Macrocystis pyrifera P11B4 male)
CCTTTTTCCCCGCAGTACTTGTACGTTTGCCATGCTGAGGCGAATGCGAT
TCTGAACCGGAATGCTGCCGACTTGCGGGGGAGTCGGATGTACGTGGCGT
TGTTCCCTTGCAACGAGTGCTCGAAGCTGATCATCCAGAGTGGGATCGAG
GAGGTGGTGTTCACCAGCGACAAGTACCACGAAACGCCTTCCATGACTGC
CTCAAGGCGCATGTTCGACCTTGCAGGAGTGCGCTATCGCCAACACACCC
CAAGAGACCCCTGCATCTCCATCCACTTTGCCCCTTTTTCCCCGCAGTAC
TTGTACGTTTGCCATGCTGAGGCGAATGCGATTCTGAACCGGAATGCTGC
CGACTTGCGGGGGAGTCGGATGTACGTGGCGTTGTTCCCTTGCAACGAGT
GCTCGAAGCTGATCATCCAGAGTGGGATCGAGGAGGTGGTGTTCACCAGC
GACAAGTACCACGAAACGCCTTCCATGACTGCCTCAAGGCGCATGTTCGA
CCTTGCAGGAGTGCGCTATCGCCAACACACCCCAAGAGACCCCTGCATCT
CCATCCACTTTGCC
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