mRNA_M-pyrifera_M_contig119309.3981.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119309.3981.1
Unique NamemRNA_M-pyrifera_M_contig119309.3981.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119309.3981.1 vs. uniprot
Match: A0A7S4I893_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I893_9EUKA)

HSP 1 Score: 112 bits (281), Expect = 2.000e-27
Identity = 58/118 (49.15%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    1 LCITPPKEQPNPSWIEHAYKPLDIKKMYAKHTDMQNNAGNKPVTARGITRIREFVHWAFAESGAADHVIVSGHSLYFRHMFRTFLPVDADSKGKTSKIHNGGAVAFTLERTPTKEGGI 354
            L ITP K QP+PSWIE  Y  LDI K+Y K   +  N GNK  ++ G  R+ EF  W F  +   ++VIVSGHSL+FRH FR F P   D  GKT KIHN G VA  ++    K+G I
Sbjct:  227 LSITPAKLQPHPSWIERGYS-LDIPKVYEKQLHVSGNTGNKQASSTGKQRLNEFNEWVF-NTIEEEYVIVSGHSLWFRHFFREFYPAAIDHPGKTKKIHNNGMVAVRVKYQKLKDGSI 342          
BLAST of mRNA_M-pyrifera_M_contig119309.3981.1 vs. uniprot
Match: A0A7S1DXH9_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1DXH9_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.790e-22
Identity = 46/116 (39.66%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    1 LCITPPKEQPNPSWIEHAYKPLDIKKMYAKHTDMQNNAGNKPVTARGITRIREFVHWAFAESGAADHVIVSGHSLYFRHMFRTFLPVDADSKGKTSKIHNGGAVAFTLERTPTKEG 348
            L ITP     + SWI+   K  D +++++   D+  + GNKP+   G+ R+ EF  +AF  +   DH+IV GHS++FR  F+TFLP   D K K  K+ N G VA TL +  T++G
Sbjct:   12 LSITPAYTPVSASWIDKTSKICDFQQVFSTQLDVSLHIGNKPINTNGLKRMLEFCDYAF--NVEEDHIIVGGHSIWFRSFFKTFLPYKIDHKSKQRKLKNCGVVAVTLMKASTEDG 125          
BLAST of mRNA_M-pyrifera_M_contig119309.3981.1 vs. uniprot
Match: A0A0G4FY94_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FY94_VITBC)

HSP 1 Score: 86.7 bits (213), Expect = 1.660e-17
Identity = 46/129 (35.66%), Postives = 65/129 (50.39%), Query Frame = 1
Query:    1 LCITPPKEQPNPSWIEHAYKPLDIKKMYAKHTDMQNNAGNKPVTARGITRIREFVHWAFA-------------ESGAADHVIVSGHSLYFRHMFRTFLPVDADSKGKTSKIHNGGAVAFTLERTPTKEG 348
            + +  P + P  S +E + + L ++ +Y    D   N GNKP+ +R   R++ F  W FA              SG  + VIV GHS +FRH FR ++P D D   K  KI NGG V FTL++    EG
Sbjct:  263 ISLAFPGDAPPTSLLESSLEALGVRNLYLTRLDASLNHGNKPIRSRVTKRLQSFAEWVFAYRPSVNGEEGISGTSGGPEVVIVGGHSGWFRHFFRAYMPGDVDHVAKRKKIVNGGMVRFTLQKRIIGEG 391          
BLAST of mRNA_M-pyrifera_M_contig119309.3981.1 vs. uniprot
Match: A0A2R5GCD2_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCD2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 7.900e-16
Identity = 46/118 (38.98%), Postives = 64/118 (54.24%), Query Frame = 1
Query:    4 CITPPKEQPNPSWIEHAYKPLDIKKMYAKHTDMQN---NAGNKPVTARGITRIREFVHWAFAESGAADHVIVSGHSLYFRHMFRTFLPVDADSKGKTSKIHNGGAVAFTLERTPTKEG 348
            C+   K Q  P   +     +++KKM        N   N G+KPV++RGI R+++F  W F        VI +GHSLY RH F TFLP+ + +  +T+K+ N   VAFTLER   K G
Sbjct:  203 CVALAKPQGYPELSDEELHGINMKKMTWTPERFFNGLENDGDKPVSSRGIHRVKDFAAWCFEHDEPT--VIAAGHSLYARHFFNTFLPLSSTNIARTNKMKNCAVVAFTLERGKLKNG 318          
BLAST of mRNA_M-pyrifera_M_contig119309.3981.1 vs. uniprot
Match: A0A7S1QXB2_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1QXB2_ALECA)

HSP 1 Score: 78.6 bits (192), Expect = 1.260e-14
Identity = 41/110 (37.27%), Postives = 61/110 (55.45%), Query Frame = 1
Query:    1 LCITPPKEQPNPSWIEHAYKPLD--IKKMYAKHTDMQNNAGNKPVTARGITRIREFVHWAFAESGAADHVIVSGHSLYFRHMFRTFLPVDADSKGKTSKIHNGGAVAFTL 324
            L +TP ++ P     E A + +   +   Y    D + N GNK +  + I R  +FV+W F +    D +IVSGHSL+FR  F+++LP   DS  KT+K+ N G +AF L
Sbjct:  255 LTLTPARKLPQVPAAEAAMRSMGDLMGHFYRTRLDSKLNEGNKTLKMKAIKRQEQFVNWVFDKKDHVDCIIVSGHSLWFREFFKSYLPKACDSLAKTNKMVNCGCIAFDL 364          
BLAST of mRNA_M-pyrifera_M_contig119309.3981.1 vs. uniprot
Match: A0A7S2G619_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2G619_9DINO)

HSP 1 Score: 73.9 bits (180), Expect = 1.150e-13
Identity = 43/113 (38.05%), Postives = 59/113 (52.21%), Query Frame = 1
Query:    1 LCITPPKEQPNPSWIEHAYKPLD--IKKMYAKHTDMQNNAGNKPVTARGITRIREFVHWAFAESGAADHV---IVSGHSLYFRHMFRTFLPVDADSKGKTSKIHNGGAVAFTL 324
            L +TP +  P     E A + +   +   Y    D + N GNK +  + I R  +FV W F   G  DHV   +VSGHSL+FR  F+++LP   D   KT+K+ N G VAF L
Sbjct:   76 LSLTPARRLPQVPAAEAAMRNMGDLMGHFYRTRLDTKQNTGNKTLKQKAIKRQEQFVSWVF--DGKKDHVDLIVVSGHSLWFREFFKSYLPKACDHLAKTNKMVNCGCVAFDL 186          
BLAST of mRNA_M-pyrifera_M_contig119309.3981.1 vs. uniprot
Match: A0A7S1A1I6_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A1I6_NOCSC)

HSP 1 Score: 74.7 bits (182), Expect = 3.170e-13
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   82 YAKHTDMQNNAGNKPVTARGITRIREFVHWAFAESGAADHVIVSGHSLYFRHMFRTFLPVDADSKGKTSKIHNGGAVAFTL 324
            YA   D ++N GNK +    + R  EFV W F +   +D +IVSGHSL+FR  F+++LP+++    KT K+ N G VAF L
Sbjct:  298 YANRLDKKHNEGNKTLKQTAMVRQDEFVKWVFNKDTKSDCIIVSGHSLWFREFFKSYLPLNSKHDAKTYKMVNCGVVAFDL 378          
BLAST of mRNA_M-pyrifera_M_contig119309.3981.1 vs. uniprot
Match: A0A7S2W3E9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3E9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 6.150e-13
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 1
Query:   97 DMQNNAGNKPVTARGITRIREFVHWAFAESGAADHVIVSGHSLYFRHMFRTFLPVDADSK----GKTSKIHNGGAVAFTLERTPTKEG 348
            D+ ++AGNKP+   G+ R+ +F  WA       D +I +GHSL+FRH FRTFLP     +     K  K+ NGGAV F LE   T++G
Sbjct:  297 DVSDSAGNKPIFGTGLQRLEKFCTWAAERD--EDMIITAGHSLWFRHFFRTFLPRTLSEELAIQAKDLKMKNGGAVGFDLEFGQTQDG 382          
BLAST of mRNA_M-pyrifera_M_contig119309.3981.1 vs. uniprot
Match: X6NUR1_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NUR1_RETFI)

HSP 1 Score: 73.2 bits (178), Expect = 6.450e-13
Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = 1
Query:   82 YAKHTDMQNNAGNKPVTARGITRIREFVHWAFAESGAAD-HVIVSGHSLYFRHMFRTFLPVDADSKGKTSKIHNGGAVAFTLERTPTKEGGI 354
            +A+  +     G KP   RG +RI  FV W F+ +  A  +V+VSGHSL+ RH F TFLP D+    KT K+ N GA+AF   +    +G I
Sbjct:  186 FAQRLEPYYKQGFKPSLVRGDSRIHAFVEWLFSSACEAHANVVVSGHSLWLRHFFATFLPRDSIHPAKTYKVKNSGAIAFDFVKYEMNDGTI 277          
BLAST of mRNA_M-pyrifera_M_contig119309.3981.1 vs. uniprot
Match: A0A7S2CRF2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CRF2_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.190e-12
Identity = 38/91 (41.76%), Postives = 47/91 (51.65%), Query Frame = 1
Query:   85 AKHTDMQNNAGNKPVTARGITRIREFVHWAFAESGAADHVIVSGHSLYFRHMFRTFLPV----DADSKGKTSKIHNGGAVAFTLERTPTKE 345
            AK  DM  N GNKP+   G  R+  F  W F      D +I +GHSL+FRH F+TFL      D +   K  K+ N G VAF L    TK+
Sbjct:  122 AKVLDMSENTGNKPIFGNGKQRLEAFSRWVFERE--EDTIIAAGHSLWFRHYFKTFLATEGLSDLEQDAKKYKMKNCGVVAFDLTTNATKD 210          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119309.3981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A7S4I893_9EUKA2.000e-2749.15Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S1DXH9_9STRA5.790e-2239.66Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A0G4FY94_VITBC1.660e-1735.66Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A2R5GCD2_9STRA7.900e-1638.98Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A7S1QXB2_ALECA1.260e-1437.27Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S2G619_9DINO1.150e-1338.05Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7S1A1I6_NOCSC3.170e-1343.21Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7S2W3E9_9STRA6.150e-1343.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
X6NUR1_RETFI6.450e-1341.30Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
A0A7S2CRF2_9STRA1.190e-1241.76Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119309contigM-pyrifera_M_contig119309:176..544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue9.1e-17
Seed eggNOG ortholog529818.AMSG_00696T0
Hectar predicted targeting categoryother localisation
EggNOG OGs2ASAB@1,2RZPE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size369
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.921289-CDS-M-pyrifera_M_contig119309:175..5441622815712.921289-CDS-M-pyrifera_M_contig119309:175..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119309 176..544 -
1692277534.4004536-CDS-M-pyrifera_M_contig119309:175..5441692277534.4004536-CDS-M-pyrifera_M_contig119309:175..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119309 176..544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119309.3981.1prot_M-pyrifera_M_contig119309.3981.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119309 176..544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119309.3981.1

>prot_M-pyrifera_M_contig119309.3981.1 ID=prot_M-pyrifera_M_contig119309.3981.1|Name=mRNA_M-pyrifera_M_contig119309.3981.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
LCITPPKEQPNPSWIEHAYKPLDIKKMYAKHTDMQNNAGNKPVTARGITR
IREFVHWAFAESGAADHVIVSGHSLYFRHMFRTFLPVDADSKGKTSKIHN
GGAVAFTLERTPTKEGGISGYA*
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mRNA from alignment at M-pyrifera_M_contig119309:176..544-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119309.3981.1 ID=mRNA_M-pyrifera_M_contig119309.3981.1|Name=mRNA_M-pyrifera_M_contig119309.3981.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig119309:176..544- (Macrocystis pyrifera P11B4 male)
CTCTGCATTACGCCGCCCAAGGAGCAGCCGAACCCCTCGTGGATCGAGCA CGCCTACAAGCCGCTCGACATCAAGAAGATGTACGCCAAGCACACCGACA TGCAGAACAACGCAGGCAACAAGCCCGTCACCGCACGCGGCATCACGCGC ATCCGCGAGTTCGTTCACTGGGCTTTTGCAGAGTCTGGCGCCGCAGACCA CGTCATCGTCTCTGGCCACTCCCTCTACTTCCGCCACATGTTCAGGACCT TCCTGCCTGTAGACGCCGACAGCAAGGGCAAGACCAGCAAGATCCACAAC GGCGGCGCCGTCGCTTTCACCCTCGAGCGTACGCCCACCAAGGAGGGCGG CATCAGCGGCTATGCCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119309:176..544-

>mRNA_M-pyrifera_M_contig119309.3981.1 ID=mRNA_M-pyrifera_M_contig119309.3981.1|Name=mRNA_M-pyrifera_M_contig119309.3981.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig119309:176..544- (Macrocystis pyrifera P11B4 male)
CTCTGCATTACGCCGCCCAAGGAGCAGCCGAACCCCTCGTGGATCGAGCA
CGCCTACAAGCCGCTCGACATCAAGAAGATGTACGCCAAGCACACCGACA
TGCAGAACAACGCAGGCAACAAGCCCGTCACCGCACGCGGCATCACGCGC
ATCCGCGAGTTCGTTCACTGGGCTTTTGCAGAGTCTGGCGCCGCAGACCA
CGTCATCGTCTCTGGCCACTCCCTCTACTTCCGCCACATGTTCAGGACCT
TCCTGCCTGTAGACGCCGACAGCAAGGGCAAGACCAGCAAGATCCACAAC
GGCGGCGCCGTCGCTTTCACCCTCGAGCGTACGCCCACCAAGGAGGGCGG
CATCAGCGGCTATGCCTAGCTCTGCATTACGCCGCCCAAGGAGCAGCCGA
ACCCCTCGTGGATCGAGCACGCCTACAAGCCGCTCGACATCAAGAAGATG
TACGCCAAGCACACCGACATGCAGAACAACGCAGGCAACAAGCCCGTCAC
CGCACGCGGCATCACGCGCATCCGCGAGTTCGTTCACTGGGCTTTTGCAG
AGTCTGGCGCCGCAGACCACGTCATCGTCTCTGGCCACTCCCTCTACTTC
CGCCACATGTTCAGGACCTTCCTGCCTGTAGACGCCGACAGCAAGGGCAA
GACCAGCAAGATCCACAACGGCGGCGCCGTCGCTTTCACCCTCGAGCGTA
CGCCCACCAAGGAGGGCGGCATCAGCGGCTATGCCTAG
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