mRNA_M-pyrifera_M_contig119304.3979.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119304.3979.1
Unique NamemRNA_M-pyrifera_M_contig119304.3979.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119304.3979.1 vs. uniprot
Match: A0A0L0DCA5_THETB (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DCA5_THETB)

HSP 1 Score: 146 bits (369), Expect = 5.360e-38
Identity = 79/178 (44.38%), Postives = 117/178 (65.73%), Query Frame = 1
Query:    1 YYRDQIGNISSTHIFTQRQGIVKLDITPRFMLFGGWKIDWLSGYNLPSAYYLS-RNDAGSYVLSVPFTSGLADSLVEELSYSVVLPEGATDVDVVSPYPIS-EVTFSLRPTYLDTSGRVVASFTAYNVIAEHNDVLFVKYNVPAGSFYREPFMLIAGFFAVFLVAIFYFRCDMSITPS 528
            YYRD IGNIS++ + + R+  V++++ PRF LFGGWK ++  GYNLP A YL    D+G Y+L+V       +  V +    +VLPEGA+DV V +P+ +  E++ S R TYLDTSGRVVA F+A N++ + + V  V Y + A +   EP +L++  FA+FL A+ Y R D+S++PS
Sbjct:  283 YYRDVIGNISTSALRSLREQ-VEVEMRPRFPLFGGWKTEFYMGYNLPLAAYLRVAADSGRYILTVDMAGAFENVPVTDAIIRLVLPEGASDVAVHTPFAVEPELSISSRKTYLDTSGRVVAEFSAANLVTDQDLVFQVSYALSATAILMEPILLMSALFALFLAAMVYVRLDLSLSPS 459          
BLAST of mRNA_M-pyrifera_M_contig119304.3979.1 vs. uniprot
Match: A0A7S4MHU6_9EUKA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MHU6_9EUKA)

HSP 1 Score: 146 bits (369), Expect = 6.220e-38
Identity = 78/174 (44.83%), Postives = 111/174 (63.79%), Query Frame = 1
Query:    1 YYRDQIGNISSTHIFTQRQGIVKLDITPRFMLFGGWKIDWLSGYNLPSAYYLSRNDAGSYVLSVPFTSGLADSLVEELSYSVVLPEGATDVDVVSPYPISEVTFSLRPTYLDTSGRVVASFTAYNVIAEHN-DVLFVKYNVPAGSFYREPFMLIAGFFAVFLVAIFYFRCDMSI 519
            YYRD IGNIS++H+F      V  +I PRF++FGGW+ ++  GYNLP+  YLS  +   Y LS+PF +   D++ +++  +V+LPEG+ DV V S     E   S+R TYLDT+GRVV S  A N+++EH    L V Y   + +  REP  LI G+  +FLVAI YFR +++I
Sbjct:  291 YYRDVIGNISTSHVFPHSD-FVMFEIQPRFVMFGGWRDEFKIGYNLPTNPYLSL-EGDRYELSLPFVNNFEDAVFDDVKINVILPEGSYDVKVDSSVNFYEQRESVRQTYLDTTGRVVLSLRASNLVSEHRYQKLVVSYKFESSTMIREPLFLIGGYCLLFLVAIIYFRTNITI 462          
BLAST of mRNA_M-pyrifera_M_contig119304.3979.1 vs. uniprot
Match: A0A6L5DFI9_9INSE (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5DFI9_9INSE)

HSP 1 Score: 142 bits (359), Expect = 1.680e-36
Identity = 74/175 (42.29%), Postives = 107/175 (61.14%), Query Frame = 1
Query:    1 YYRDQIGNISSTHIFTQRQGIVKLDITPRFMLFGGWKIDWLSGYNLPSAYYLSRNDAGSYVLSVPFTSGLADS-LVEELSYSVVLPEGATDVDVVSPYPISEVTFSLRPTYLDTSGRVVASFTAYNVIAEHNDVLFVKYNVPAGSFYREPFMLIAGFFAVFLVAIFYFRCDMSIT 522
            YYRD+IGNIS++H+       V+LD+ PRF LFGGWK  ++ GYN+PS  YL  N    +VL +     + D  LV+EL   ++LPEG+  V++ +PYP+  +  +L  TYLDT GR V S T  N++  H D   +KY+ P     +EP +++  F+ +FL+ I Y R D SIT
Sbjct:  285 YYRDEIGNISTSHMRVLSDS-VELDLRPRFPLFGGWKTHYVLGYNVPSYEYLF-NSGDQFVLKMRLLDHVYDDMLVDELETKIILPEGSNSVELATPYPVRRLADTLHYTYLDTKGRPVISITKRNLVENHIDDFELKYSYPKILMLQEPLLVVVAFYLLFLLVIVYVRLDFSIT 457          
BLAST of mRNA_M-pyrifera_M_contig119304.3979.1 vs. uniprot
Match: F2TVG9_SALR5 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TVG9_SALR5)

HSP 1 Score: 140 bits (352), Expect = 2.890e-36
Identity = 75/179 (41.90%), Postives = 109/179 (60.89%), Query Frame = 1
Query:    4 YRDQIGNISSTHIFTQRQGIVKLDITPRFMLFGGWKIDWLSGYNLPSAYYLSRNDAGSYVLSVPFTSGLADS-LVEELSYSVVLPEGATDVDVVSPYPISEVTFSLRPTYLDTSGRVVASFTAYNVIAEHNDVLFVKYNVPAGSFYREPFMLIAGFFAVFLVAIFYFRCDMSITPSASS 537
            YRD IGNIS++++  +   ++ ++I PRF LFGGWK  +   Y++PS   LS  +  +YV+S  F   + D+ +V+E    VVLPEGA DV V +P+P+ E +  ++ TY DT+GR V      N++ EH     V Y +PAGS  REP M +A FFA+F+VAI   R  +SI P   +
Sbjct:  268 YRDVIGNISTSNLREEEDAVI-VEIQPRFPLFGGWKTQYSLAYDVPSGEILST-EGSTYVMSTRFVGHVFDNQVVDEAEVRVVLPEGAADVQVNTPFPVDEQSEDVKVTYFDTTGRSVIVLKKANLVEEHMQDFTVSYTMPAGSTVREPLMAVAFFFALFVVAIVLNRVSLSIAPDVQA 444          
BLAST of mRNA_M-pyrifera_M_contig119304.3979.1 vs. uniprot
Match: F0ZGV5_DICPU (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZGV5_DICPU)

HSP 1 Score: 136 bits (342), Expect = 9.110e-35
Identity = 76/177 (42.94%), Postives = 106/177 (59.89%), Query Frame = 1
Query:    1 YYRDQIGNISSTHIFTQRQGIVKLDITPRFMLFGGWKIDWLSGYNLPSAYYLSRNDA-GSYVLSVPFTSGLADSLVEELSYSVVLPEGATDVDVVSPYPISEVTFSLRPTYLDTSGRVVASFTAYNVIAEHNDVLFVKYNVPAGSFYREPFMLIAGFFAVFLVAIFYFRCDMSITPS 528
            YYRD IGNIS T ++  +   +   ITPRF L GGWK ++ +GYNLP   +LS + A GSY L+V F  G+ +  VE+    ++LPEGATD+ V SP+P++E T  +R TYLDT GR V      +   E+   + V YN+ + S + EP ++I   F   L  +FY R D+SI  S
Sbjct:  280 YYRDSIGNIS-TSVYQYQSNRINFKITPRFPLMGGWKNNFYTGYNLPIQNFLSVDSADGSYHLNVTFGVGIDNIYVEDHQVKIILPEGATDIKVKSPFPVTE-TREIRKTYLDTVGRPVIVLNVRDTSFENYRYIQVTYNLSSLSIFHEPLLVIGAVFTFCLFIMFYSRFDLSINKS 454          
BLAST of mRNA_M-pyrifera_M_contig119304.3979.1 vs. uniprot
Match: T1GKA4_MEGSC (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 n=1 Tax=Megaselia scalaris TaxID=36166 RepID=T1GKA4_MEGSC)

HSP 1 Score: 130 bits (327), Expect = 1.420e-34
Identity = 71/180 (39.44%), Postives = 106/180 (58.89%), Query Frame = 1
Query:    1 YYRDQIGNISSTHIFTQRQGIVKLDITPRFMLFGGWKIDWLSGYNLPSAYYLSRNDAGSYVLSVPFTSGLADSLV-EELSYSVVLPEGATDVDVVSPYPISEVTFSLRPTYLDTSGRVVASFTAYNVIAEHNDVLFVKYNVPAGSFYREPFMLIAGFFAVFLVAIFYFRCDMSITPSASS 537
            YYRD  GNIS++++   +   V+LD+ PRF LFGGWK  +  GYN+PS  YL  N+  +Y+L +     + D +V  + +  ++LPEG+T++ ++SPYPI+    SL  TYLDT GR V  F+  N++  H     +KYN    +  +EP ++I  FF +F+V I   R D SI     S
Sbjct:   43 YYRDTNGNISTSNMKILKDA-VELDLRPRFPLFGGWKTHYTIGYNVPSFEYLFNNE-NNYLLKMRVIDHIFDDMVVADATIKIILPEGSTNIKLISPYPINRHADSLHYTYLDTFGRPVIEFSKKNLVENHIHDFNLKYNFAKVTMLQEPLLVIGFFFILFVVVIICIRLDFSIYKDKES 220          
BLAST of mRNA_M-pyrifera_M_contig119304.3979.1 vs. uniprot
Match: A0A7S3Y5N0_HETAK (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5N0_HETAK)

HSP 1 Score: 135 bits (340), Expect = 2.030e-34
Identity = 76/178 (42.70%), Postives = 102/178 (57.30%), Query Frame = 1
Query:    1 YYRDQIGNISSTHIFTQR-QGIVKLDITPRFMLFGGWKIDWLSGYNLPSAYYLSRNDAGSYVLSVPFTSGLADSLVEELSYSVVLPEGATDVDVVSPYPISEVTFSLRPTYLDT---SGRVVASFTAYNVIAEHNDVLFVKYNVPAGSFYREPFMLIAGFFAVFLVAIFYFRCDMSIT 522
            YYRDQIGN+SS+ I      G ++L+I PRF LFGGWK +W  G+NLPS   L+R++ G Y L+  F     D  VE+    V+LPEGATD++V  P+ + E   S R TYLDT    GR + +    NV+ EHN    V Y         EP + +A F A+F +AI   R D+ +T
Sbjct:  284 YYRDQIGNVSSSDIRPAAVAGQIELEIRPRFPLFGGWKTEWYQGWNLPSEAGLTRSEGGRYTLTADFGIPFKDVWVEDHQVKVILPEGATDIEVRVPFEVEEGRSS-RATYLDTPLMGGRPIVTLRKLNVVREHNRPFTVSYTFRPHYMLHEPLVCVAFFAALFALAILLGRVDLRLT 460          
BLAST of mRNA_M-pyrifera_M_contig119304.3979.1 vs. uniprot
Match: A0A2J7PLA1_9NEOP (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7PLA1_9NEOP)

HSP 1 Score: 135 bits (341), Expect = 2.030e-34
Identity = 71/175 (40.57%), Postives = 104/175 (59.43%), Query Frame = 1
Query:    1 YYRDQIGNISSTHIFTQRQGIVKLDITPRFMLFGGWKIDWLSGYNLPSAYYLSRNDAGSYVLSVPFTSGLADSL-VEELSYSVVLPEGATDVDVVSPYPISEVTFSLRPTYLDTSGRVVASFTAYNVIAEHNDVLFVKYNVPAGSFYREPFMLIAGFFAVFLVAIFYFRCDMSIT 522
            YYRD+IGNIS++H+       V+LD+ PRF LFGGWK  ++ GYN+PS  YL  N    Y+L + F   + D + V+E+   ++LPEG+ D+ + +PYP+  +  SL  TYLDT GR V      N++  H     ++Y  P     +EPF+++  F+ +FL  I Y R D SIT
Sbjct:  176 YYRDEIGNISTSHMKILSDS-VELDLRPRFPLFGGWKTHYVIGYNVPSYEYLF-NRGDDYLLRMRFLDHVFDDMIVDEVITKIILPEGSQDIQLTTPYPVEHLPNSLHFTYLDTKGRPVIMLRKKNLVENHIQDFELQYKFPRILMLQEPFLVVLAFYLLFLFVIIYVRLDFSIT 348          
BLAST of mRNA_M-pyrifera_M_contig119304.3979.1 vs. uniprot
Match: A0A226DDL0_FOLCA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DDL0_FOLCA)

HSP 1 Score: 137 bits (344), Expect = 2.080e-34
Identity = 72/177 (40.68%), Postives = 107/177 (60.45%), Query Frame = 1
Query:    1 YYRDQIGNISSTHIFTQRQGIVKLDITPRFMLFGGWKIDWLSGYNLPSAYYLSRNDAGSYVLSVPFTSGLADSLV-EELSYSVVLPEGATDVDVVSPYPISEVTFSLRPTYLDTSGRVVASFTAYNVIAEHNDVLFVKYNVPAGSFYREPFMLIAGFFAVFLVAIFYFRCDMSITPS 528
            YYRD IGNIS+++++++    V+L + PRF LFGGWK  ++ GYN+PS  YL   +  +Y L +     + DS+V E+LS  ++LPEGA+++    PYP+ E+  SL  TYLD  GR V +  + N++  H     V+Y  P     REP +++A F  +FL  I Y R D SI+ S
Sbjct:  284 YYRDDIGNISTSNMWSKHDS-VELTLRPRFPLFGGWKTRYVLGYNVPSYEYLFA-EGSNYALKMRLLDHVFDSMVVEDLSVKIILPEGASNIKFRPPYPVKELARSLHYTYLDVIGRPVITVLSSNLVENHIQDFTVEYTFPKVYMLREPLLIVAAFLILFLTVIIYVRLDFSISSS 458          
BLAST of mRNA_M-pyrifera_M_contig119304.3979.1 vs. uniprot
Match: A7RVR9_NEMVE (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RVR9_NEMVE)

HSP 1 Score: 137 bits (344), Expect = 2.120e-34
Identity = 71/180 (39.44%), Postives = 110/180 (61.11%), Query Frame = 1
Query:    1 YYRDQIGNISSTHIFTQRQGIVKLDITPRFMLFGGWKIDWLSGYNLPSAYYLSRNDAGSYVLSVPFTSGLADSLV-EELSYSVVLPEGATDVDVVSPYPISEVTFSLRPTYLDTSGRVVASFTAYNVIAEHNDVLFVKYNVPAGSFYREPFMLIAGFFAVFLVAIFYFRCDMSITPSASS 537
            YYRD+IGNIS++H+  Q +  V+L++ PRF LFGGW+  +L GYN+PS  YL  +   +YVL + F   + D  V ++++  V+LPEG+ D+ + +P+PI+E    L+ TYLDT GR V      NVI +H     ++Y        +EP +++  F+ +FL+ I Y R D SI+   +S
Sbjct:  287 YYRDEIGNISTSHMLNQEES-VELELRPRFPLFGGWQTRYLIGYNVPSYEYL-HSSGNNYVLKMRFVDHIFDDFVIDQMTLKVILPEGSKDIKLKTPFPINEGKRELQFTYLDTVGRPVVVAHKTNVIEQHIQDFALQYTFNKVMLLQEPLLIVGAFYLLFLLVIIYVRMDFSISKDEAS 464          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119304.3979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0DCA5_THETB5.360e-3844.38Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A7S4MHU6_9EUKA6.220e-3844.83Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A6L5DFI9_9INSE1.680e-3642.29Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
F2TVG9_SALR52.890e-3641.90Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
F0ZGV5_DICPU9.110e-3542.94Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
T1GKA4_MEGSC1.420e-3439.44Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A7S3Y5N0_HETAK2.030e-3442.70Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A2J7PLA1_9NEOP2.030e-3440.57Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A226DDL0_FOLCA2.080e-3440.68Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A7RVR9_NEMVE2.120e-3439.44Dolichyl-diphosphooligosaccharide--protein glycosy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119304contigM-pyrifera_M_contig119304:5..544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.8
Seed ortholog evalue3.8e-32
Seed eggNOG ortholog529818.AMSG_05727T0
Preferred nameRPN1
KEGG koko:K12666
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00072
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004576,GO:0004579,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005886,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0006810,GO:0008150,GO:0008152,GO:0008250,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009505,GO:0009987,GO:0012505,GO:0015833,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0030312,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042175,GO:0042470,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048770,GO:0051179,GO:0051234,GO:0070085,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.dolichyl-diphosphooligosaccharide-protein glycotransferase activity
EggNOG OGsKOG2291@1,KOG2291@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size540
Cds size540
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.8241167-CDS-M-pyrifera_M_contig119304:4..5441622815712.8241167-CDS-M-pyrifera_M_contig119304:4..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119304 5..544 -
1692277534.3662875-CDS-M-pyrifera_M_contig119304:4..5441692277534.3662875-CDS-M-pyrifera_M_contig119304:4..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119304 5..544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119304.3979.1prot_M-pyrifera_M_contig119304.3979.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119304 5..544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119304.3979.1

>prot_M-pyrifera_M_contig119304.3979.1 ID=prot_M-pyrifera_M_contig119304.3979.1|Name=mRNA_M-pyrifera_M_contig119304.3979.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp
YYRDQIGNISSTHIFTQRQGIVKLDITPRFMLFGGWKIDWLSGYNLPSAY
YLSRNDAGSYVLSVPFTSGLADSLVEELSYSVVLPEGATDVDVVSPYPIS
EVTFSLRPTYLDTSGRVVASFTAYNVIAEHNDVLFVKYNVPAGSFYREPF
MLIAGFFAVFLVAIFYFRCDMSITPSASS*
back to top

mRNA from alignment at M-pyrifera_M_contig119304:5..544-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119304.3979.1 ID=mRNA_M-pyrifera_M_contig119304.3979.1|Name=mRNA_M-pyrifera_M_contig119304.3979.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig119304:5..544- (Macrocystis pyrifera P11B4 male)
TACTACCGTGACCAGATTGGCAACATCTCGAGCACTCATATCTTTACACA GCGCCAGGGCATCGTGAAGCTGGACATCACGCCCAGGTTCATGCTCTTTG GAGGATGGAAGATTGACTGGCTCAGCGGCTACAACCTCCCTAGCGCCTAC TATCTCTCCAGGAACGACGCAGGATCGTACGTCCTGAGTGTTCCCTTCAC AAGCGGCCTGGCAGACTCTCTCGTGGAGGAGCTCTCTTATTCTGTGGTGC TGCCTGAGGGAGCCACTGATGTGGATGTTGTGTCGCCCTACCCTATTTCG GAGGTGACTTTCTCTTTGAGGCCGACGTACTTGGATACATCTGGCCGCGT GGTGGCCAGCTTCACCGCCTACAACGTCATCGCTGAGCACAATGATGTTC TCTTTGTCAAGTACAACGTGCCGGCGGGTAGCTTCTACAGGGAGCCTTTC ATGCTCATTGCTGGATTCTTCGCAGTGTTCCTTGTTGCGATCTTCTACTT CAGGTGCGACATGAGCATCACACCTTCTGCATCCTCTTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig119304:5..544-

>mRNA_M-pyrifera_M_contig119304.3979.1 ID=mRNA_M-pyrifera_M_contig119304.3979.1|Name=mRNA_M-pyrifera_M_contig119304.3979.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig119304:5..544- (Macrocystis pyrifera P11B4 male)
TACTACCGTGACCAGATTGGCAACATCTCGAGCACTCATATCTTTACACA
GCGCCAGGGCATCGTGAAGCTGGACATCACGCCCAGGTTCATGCTCTTTG
GAGGATGGAAGATTGACTGGCTCAGCGGCTACAACCTCCCTAGCGCCTAC
TATCTCTCCAGGAACGACGCAGGATCGTACGTCCTGAGTGTTCCCTTCAC
AAGCGGCCTGGCAGACTCTCTCGTGGAGGAGCTCTCTTATTCTGTGGTGC
TGCCTGAGGGAGCCACTGATGTGGATGTTGTGTCGCCCTACCCTATTTCG
GAGGTGACTTTCTCTTTGAGGCCGACGTACTTGGATACATCTGGCCGCGT
GGTGGCCAGCTTCACCGCCTACAACGTCATCGCTGAGCACAATGATGTTC
TCTTTGTCAAGTACAACGTGCCGGCGGGTAGCTTCTACAGGGAGCCTTTC
ATGCTCATTGCTGGATTCTTCGCAGTGTTCCTTGTTGCGATCTTCTACTT
CAGGTGCGACATGAGCATCACACCTTCTGCATCCTCTTAGTACTACCGTG
ACCAGATTGGCAACATCTCGAGCACTCATATCTTTACACAGCGCCAGGGC
ATCGTGAAGCTGGACATCACGCCCAGGTTCATGCTCTTTGGAGGATGGAA
GATTGACTGGCTCAGCGGCTACAACCTCCCTAGCGCCTACTATCTCTCCA
GGAACGACGCAGGATCGTACGTCCTGAGTGTTCCCTTCACAAGCGGCCTG
GCAGACTCTCTCGTGGAGGAGCTCTCTTATTCTGTGGTGCTGCCTGAGGG
AGCCACTGATGTGGATGTTGTGTCGCCCTACCCTATTTCGGAGGTGACTT
TCTCTTTGAGGCCGACGTACTTGGATACATCTGGCCGCGTGGTGGCCAGC
TTCACCGCCTACAACGTCATCGCTGAGCACAATGATGTTCTCTTTGTCAA
GTACAACGTGCCGGCGGGTAGCTTCTACAGGGAGCCTTTCATGCTCATTG
CTGGATTCTTCGCAGTGTTCCTTGTTGCGATCTTCTACTTCAGGTGCGAC
ATGAGCATCACACCTTCTGCATCCTCTTAG
back to top