mRNA_M-pyrifera_M_contig11929.3970.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11929.3970.1
Unique NamemRNA_M-pyrifera_M_contig11929.3970.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig11929.3970.1 vs. uniprot
Match: D7FKS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKS0_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 8.760e-49
Identity = 87/132 (65.91%), Postives = 107/132 (81.06%), Query Frame = 1 
Query:  142 ASISQYDVEHGRSACTCICLEASVSILGHMATGS-WTGSPENVANIISIGVVMYEAVVAAGTLSTEHTSVSEILAAVTRYSDLLEPATARVYHQGVLGSDMSIAAVLGGIRRERQESSRATAVIITKPPETV 534
            ASISQYDV++GRS+CTCICLEAS+++L  +  G+ W GSP++VAN ++ GV MYEAV A GTL+ EHTSV+EILA V RY D L+PAT +V HQG+LGSD SIA VLG IR ER++ SR  AV+ITKPPETV
Sbjct:   18 ASISQYDVQNGRSSCTCICLEASLTVLERLGDGTAWAGSPDDVANCVNTGVAMYEAVAATGTLAVEHTSVAEILATVARYHDALQPATDKVTHQGLLGSDTSIARVLGEIRGERRDQSRPVAVVITKPPETV 149
[Close]
BLAST of mRNA_M-pyrifera_M_contig11929.3970.1 vs. uniprot
Match: B8BTI6_THAPS (UBA domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTI6_THAPS)

HSP 1 Score: 58.2 bits (139), Expect = 6.790e-7
Identity = 62/200 (31.00%), Postives = 88/200 (44.00%), Query Frame = 1 
Query:   13 LLAMGFPEETARAALEAHGNDLTRSLDSLL------LSAEPAS--------THSSSPA---SISQYDVEHGRSACTCICLEASVSILGHMATGSWTGSPENVANIISIGVVMYEAVVAAGTL----STEHTSVSEILAAVTRYSDLLEPATARVYHQGVLGSD-----MSIAAVLGGIRRERQESSRATAVIITKPPETV 534
            L +MGF  E A  AL+  G ++ R+LDSLL      LS    +        TH    A    ISQY+   GRSACT I L  ++ +L  +        P+   +   +   + E +     L      EH SV E+L A  +    L         QG+L S      M + AVL   + E   S+  +A+++TKPPETV
Sbjct:    2 LFSMGFNHEQALQALDDSGGNVERALDSLLGGGDEGLSGAGGAPLPFAGIITHGDVRAVHSEISQYNDPMGRSACTSIALTMALKVLSQLHACDSAVPPDEFVDASFLSTSIQEGIQLFSKLRNNSGVEHLSVEEVLGAHNKSFASLS-MLGNSPRQGILDSTNDLSPMGLEAVLSQCQAEATNSNSFSAIVLTKPPETV 200
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11929.3970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKS0_ECTSI8.760e-4965.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B8BTI6_THAPS6.790e-731.00UBA domain-containing protein n=1 Tax=Thalassiosir... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11929contigM-pyrifera_M_contig11929:196..1953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.4
Seed ortholog evalue3.8e-40
Seed eggNOG ortholog2880.D7FKS0
Hectar predicted targeting categoryother localisation
EggNOG OGs2E3UP@1,2SAUQ@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_001890.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size534
Cds size531
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11929.3970.1prot_M-pyrifera_M_contig11929.3970.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11929 196..1950 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.0825706-CDS-M-pyrifera_M_contig11929:195..3551622815712.0825706-CDS-M-pyrifera_M_contig11929:195..355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11929 196..355 -
1692277534.018597-CDS-M-pyrifera_M_contig11929:195..3551692277534.018597-CDS-M-pyrifera_M_contig11929:195..355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11929 196..355 -
1622815712.0932908-CDS-M-pyrifera_M_contig11929:620..7241622815712.0932908-CDS-M-pyrifera_M_contig11929:620..724Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11929 621..724 -
1692277534.0294106-CDS-M-pyrifera_M_contig11929:620..7241692277534.0294106-CDS-M-pyrifera_M_contig11929:620..724Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11929 621..724 -
1622815712.1037736-CDS-M-pyrifera_M_contig11929:1272..14011622815712.1037736-CDS-M-pyrifera_M_contig11929:1272..1401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11929 1273..1401 -
1692277534.0380018-CDS-M-pyrifera_M_contig11929:1272..14011692277534.0380018-CDS-M-pyrifera_M_contig11929:1272..1401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11929 1273..1401 -
1622815712.1159997-CDS-M-pyrifera_M_contig11929:1812..19501622815712.1159997-CDS-M-pyrifera_M_contig11929:1812..1950Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11929 1813..1950 -
1692277534.0467477-CDS-M-pyrifera_M_contig11929:1812..19501692277534.0467477-CDS-M-pyrifera_M_contig11929:1812..1950Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11929 1813..1950 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.133222-UTR-M-pyrifera_M_contig11929:1950..19531622815712.133222-UTR-M-pyrifera_M_contig11929:1950..1953Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11929 1951..1953 -
1692277534.0571544-UTR-M-pyrifera_M_contig11929:1950..19531692277534.0571544-UTR-M-pyrifera_M_contig11929:1950..1953Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11929 1951..1953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11929.3970.1

>prot_M-pyrifera_M_contig11929.3970.1 ID=prot_M-pyrifera_M_contig11929.3970.1|Name=mRNA_M-pyrifera_M_contig11929.3970.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp
MDQLLAMGFPEETARAALEAHGNDLTRSLDSLLLSAEPASTHSSSPASIS
QYDVEHGRSACTCICLEASVSILGHMATGSWTGSPENVANIISIGVVMYE
AVVAAGTLSTEHTSVSEILAAVTRYSDLLEPATARVYHQGVLGSDMSIAA
VLGGIRRERQESSRATAVIITKPPETV
back to top

mRNA from alignment at M-pyrifera_M_contig11929:196..1953-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11929.3970.1 ID=mRNA_M-pyrifera_M_contig11929.3970.1|Name=mRNA_M-pyrifera_M_contig11929.3970.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1758bp|location=Sequence derived from alignment at M-pyrifera_M_contig11929:196..1953- (Macrocystis pyrifera P11B4 male)
GCTATGGATCAGCTTCTTGCTATGGGTTTTCCCGAAGAAACTGCGAGGGC
TGCTCTAGAGGCGCACGGAAACGATTTGACAAGATCTTTGGATTCTCTTC
TCCTCTCAGCAGAACCGGCCTCAACTCACTCAAGCTCGCCAGTCGTAAGT
GGGCCCGCAATAGCCAGCATTAGGCTCTACGTACGAAGTATTCGGGATAA
TCTACCCTACCGTAGTGCCTCCCCCACACGGACGTAAAATACTCCCTCTG
CGTGTCGGTGTGGTTGAGGGTGACCGAGTGCAAGCAGTGACGTACTACAG
ATCTGAATTCCGACTACAGCAGCAGCAGTACCAGTACGTACGTATAAATG
GTCGTATTTTGAATTTTTGAATTTTCAGCGTATATACCAATAATAATGTG
TAATTATATGATCGATGTTGAGCTGTCGAGGTTTACTCCTGCAGGTGTTC
ATGATTTTCGATTTGGACGATTTTCGATTTTCACTTTGATTTGTGCTCAT
GTTCGTCGTCCTCCCCACTTGTCCTGTATGTTGCATGGTATAGGTGGTGC
AGGCTTCCATTAGCCAGTATGACGTCGAACATGGCAGATCTGCGTGCACC
TGTATTTGCCTGGAGGCTTCGGTGTCCATTCTGGGGCATATGGCCACAGG
GTCGTGGACGGGTTCGCCAGAAAATGTGGCGGTAAGTCGTGCGTAGATAT
CGTGGTTGATATTATTGCTGTCCGATGACCACAGCTCGTACAAACGTAAC
AATGTGATGAAAACGTACAAGAATTAATCATCAATCAATGCAAATCGTGC
AAAGCAGTACACAGCAGCAGTACGAGTGCGAGTACAGAGTACAACTCGCA
CTACTGCACTTGCTTGTGCTTCCCAACCTGCGCTCTATGATACGATGAAC
ATCTGTTAATGAAGACCGGTGCTGTGAAGTCCCGAGACAGGGGTTTCCGT
TCGTGTGTCACGTGGTCAAGGTGGAGGGTGCCGACAGGTAGTGACAGGGT
TGCAGGATCACTCTGGCTAACGTACAAGTTTTGTGAACTAACGCGATGCA
ACGTAATGCGATGCAACGTTCAAGGTCGGAACTGTCGCGGTCGTTGCACA
ATCCCGCTTGTGCTGCGTTATATGCAACCTCTACAGGTAATGTCATATTG
CGATATCTCTGTGTGTTGCTGAGTTGCAAACGTAAAAGTCACGTCACTGC
ATATCGTCCTACATTGTTCCTCCCTTCAGAATATCATCAGCATCGGCGTG
GTCATGTACGAAGCAGTGGTAGCTGCTGGTACGCTATCGACGGAGCACAC
TTCGGTATCTGAAATACTCGCCGCCGTTACCAGGTGACAGTAACGGCTCC
CGACATGTCTGATTTTAAATCGTATCTCGTACGTGATGCATACCATGGCC
GATATAGGAATAAATGACATGATCGCGCAGCCATAGTGCCACGCCATCGC
ATATTTGTTTTTAGGAGGGCAGGTTCACCCCAAGTTGGATGTGCCGGACT
GCATGTCCTTGCACGTGCATCGCATGAGCTCGGCTTCTATGCTTTCGGAG
CGTTCTGCCCCTGATTGCTGTAAACTGTTCGGCTTCCGGTCTTCCCAGGT
ATAGCGATCTGCTAGAGCCGGCAACGGCAAGAGTGTATCACCAGGGCGTG
CTTGGCTCAGACATGTCAATCGCTGCCGTTCTTGGAGGCATTCGGAGGGA
ACGCCAGGAAAGTTCCAGGGCTACCGCGGTTATAATAACAAAGCCGCCCG
AAACGGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11929:196..1953-

>mRNA_M-pyrifera_M_contig11929.3970.1 ID=mRNA_M-pyrifera_M_contig11929.3970.1|Name=mRNA_M-pyrifera_M_contig11929.3970.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1062bp|location=Sequence derived from alignment at M-pyrifera_M_contig11929:196..1953- (Macrocystis pyrifera P11B4 male)
ATGGATCAGCTTCTTGCTATGGGTTTTCCCGAAGAAACTGCGAGGGCTGC
TCTAGAGGCGCACGGAAACGATTTGACAAGATCTTTGGATTCTCTTCTCC
TCTCAGCAGAACCGGCCTCAACTCACTCAAGCTCGCCAATGGATCAGCTT
CTTGCTATGGGTTTTCCCGAAGAAACTGCGAGGGCTGCTCTAGAGGCGCA
CGGAAACGATTTGACAAGATCTTTGGATTCTCTTCTCCTCTCAGCAGAAC
CGGCCTCAACTCACTCAAGCTCGCCAGCTTCCATTAGCCAGTATGACGTC
GAACATGGCAGATCTGCGTGCACCTGTATTTGCCTGGAGGCTTCGGTGTC
CATTCTGGGGCATATGGCCACAGGGTCGTGGACGGGTTCGCCAGAAAATG
TGGCGGCTTCCATTAGCCAGTATGACGTCGAACATGGCAGATCTGCGTGC
ACCTGTATTTGCCTGGAGGCTTCGGTGTCCATTCTGGGGCATATGGCCAC
AGGGTCGTGGACGGGTTCGCCAGAAAATGTGGCGAATATCATCAGCATCG
GCGTGGTCATGTACGAAGCAGTGGTAGCTGCTGGTACGCTATCGACGGAG
CACACTTCGGTATCTGAAATACTCGCCGCCGTTACCAGAATATCATCAGC
ATCGGCGTGGTCATGTACGAAGCAGTGGTAGCTGCTGGTACGCTATCGAC
GGAGCACACTTCGGTATCTGAAATACTCGCCGCCGTTACCAGGTATAGCG
ATCTGCTAGAGCCGGCAACGGCAAGAGTGTATCACCAGGGCGTGCTTGGC
TCAGACATGTCAATCGCTGCCGTTCTTGGAGGCATTCGGAGGGAACGCCA
GGAAAGTTCCAGGGCTACCGCGGTTATAATAACAAAGCCGCCCGAAACGG
TGGTATAGCGATCTGCTAGAGCCGGCAACGGCAAGAGTGTATCACCAGGG
CGTGCTTGGCTCAGACATGTCAATCGCTGCCGTTCTTGGAGGCATTCGGA
GGGAACGCCAGGAAAGTTCCAGGGCTACCGCGGTTATAATAACAAAGCCG
CCCGAAACGGTG
back to top