mRNA_M-pyrifera_M_contig119265.3964.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119265.3964.1
Unique NamemRNA_M-pyrifera_M_contig119265.3964.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119265.3964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119265contigM-pyrifera_M_contig119265:63..389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815711.8246078-CDS-M-pyrifera_M_contig119265:62..3801622815711.8246078-CDS-M-pyrifera_M_contig119265:62..380Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119265 63..380 -
1692277533.9062634-CDS-M-pyrifera_M_contig119265:62..3801692277533.9062634-CDS-M-pyrifera_M_contig119265:62..380Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119265 63..380 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815711.8364408-UTR-M-pyrifera_M_contig119265:380..3891622815711.8364408-UTR-M-pyrifera_M_contig119265:380..389Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119265 381..389 -
1692277533.9187176-UTR-M-pyrifera_M_contig119265:380..3891692277533.9187176-UTR-M-pyrifera_M_contig119265:380..389Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119265 381..389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119265.3964.1prot_M-pyrifera_M_contig119265.3964.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119265 63..380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119265.3964.1

>prot_M-pyrifera_M_contig119265.3964.1 ID=prot_M-pyrifera_M_contig119265.3964.1|Name=mRNA_M-pyrifera_M_contig119265.3964.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MMAQAHSCLNDNKAALEFEKRNYDILVKTAGEKHQQTEQSGIWMKQFTLK
AVQEARDARESTNRQLASGAGVPANDGSEAPLFSRPIADILKYVNSGDAP
KQTRRA
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mRNA from alignment at M-pyrifera_M_contig119265:63..389-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119265.3964.1 ID=mRNA_M-pyrifera_M_contig119265.3964.1|Name=mRNA_M-pyrifera_M_contig119265.3964.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig119265:63..389- (Macrocystis pyrifera P11B4 male)
AGTTGCCACATGATGGCGCAGGCGCACAGCTGCCTCAACGACAACAAGGC
AGCCCTCGAGTTCGAGAAGAGGAACTACGACATTCTCGTCAAGACGGCGG
GTGAGAAGCACCAGCAGACCGAACAGTCTGGCATCTGGATGAAGCAGTTC
ACGCTCAAGGCGGTGCAGGAGGCGCGCGACGCCCGCGAAAGCACCAACCG
ACAGCTCGCCTCCGGTGCTGGCGTGCCTGCCAACGACGGCTCCGAGGCAC
CGTTGTTCTCCAGGCCCATCGCCGACATTCTCAAGTACGTCAACAGCGGA
GACGCACCAAAGCAGACTCGCAGGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119265:63..389-

>mRNA_M-pyrifera_M_contig119265.3964.1 ID=mRNA_M-pyrifera_M_contig119265.3964.1|Name=mRNA_M-pyrifera_M_contig119265.3964.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig119265:63..389- (Macrocystis pyrifera P11B4 male)
ATGATGGCGCAGGCGCACAGCTGCCTCAACGACAACAAGGCAGCCCTCGA
GTTCGAGAAGAGGAACTACGACATTCTCGTCAAGACGGCGGGTGAGAAGC
ACCAGCAGACCGAACAGTCTGGCATCTGGATGAAGCAGTTCACGCTCAAG
GCGGTGCAGGAGGCGCGCGACGCCCGCGAAAGCACCAACCGACAGCTCGC
CTCCGGTGCTGGCGTGCCTGCCAACGACGGCTCCGAGGCACCGTTGTTCT
CCAGGCCCATCGCCGACATTCTCAAGTACGTCAACAGCGGAGACGCACCA
AAGCAGACTCGCAGGGCGATGATGGCGCAGGCGCACAGCTGCCTCAACGA
CAACAAGGCAGCCCTCGAGTTCGAGAAGAGGAACTACGACATTCTCGTCA
AGACGGCGGGTGAGAAGCACCAGCAGACCGAACAGTCTGGCATCTGGATG
AAGCAGTTCACGCTCAAGGCGGTGCAGGAGGCGCGCGACGCCCGCGAAAG
CACCAACCGACAGCTCGCCTCCGGTGCTGGCGTGCCTGCCAACGACGGCT
CCGAGGCACCGTTGTTCTCCAGGCCCATCGCCGACATTCTCAAGTACGTC
AACAGCGGAGACGCACCAAAGCAGACTCGCAGGGCG
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