mRNA_M-pyrifera_M_contig119197.3956.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119197.3956.1
Unique NamemRNA_M-pyrifera_M_contig119197.3956.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig119197.3956.1 vs. uniprot
Match: A0A518FQV5_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FQV5_9PLAN)

HSP 1 Score: 58.2 bits (139), Expect = 4.120e-7
Identity = 42/144 (29.17%), Postives = 69/144 (47.92%), Query Frame = 1 
Query:    4 NWLAEGIVPSGTYGFLGGPYKSLKTWFSVMLAMCISCGAPFLGKKT--RKSRVLFYSGEASEFCLKRITDSLYEACAINPWDCE-IEFKTEVPNIRDKAWLIRLWRKIRKDQIDLLIIDPLYK--STGSVNSSNLFSVGESLKP 420
             +L  G++  G    + GP K LKT F + L  CI+ G     + T      V   SGE+    ++     + ++   +P   E       +P++  +  + ++ + I++ Q+  LI DP Y   S G  ++SNLFSVGE LKP
Sbjct:   29 EYLVNGVLVKGQPCIIAGPKKCLKTNFLIALGFCIATGNKLFNRFTVPNTCNVGIMSGESGAATIQETFSRIVKSYGWSPQSTEGFHVCFNLPSLESQLDIDQVAQTIKEKQLGALIFDPAYLCLSLGE-SASNLFSVGEKLKP 171
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119197.3956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A518FQV5_9PLAN4.120e-729.17Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119197contigM-pyrifera_M_contig119197:112..546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score78.6
Seed ortholog evalue2.7e-12
Seed eggNOG ortholog543632.JOJL01000056_gene318
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA primase activity
EggNOG OGs2IF71@201174,COG0358@1,COG0358@2
COG Functional cat.L
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815711.4325361-CDS-M-pyrifera_M_contig119197:111..5461622815711.4325361-CDS-M-pyrifera_M_contig119197:111..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119197 112..546 +
1692277533.6874576-CDS-M-pyrifera_M_contig119197:111..5461692277533.6874576-CDS-M-pyrifera_M_contig119197:111..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119197 112..546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119197.3956.1prot_M-pyrifera_M_contig119197.3956.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119197 112..546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119197.3956.1

>prot_M-pyrifera_M_contig119197.3956.1 ID=prot_M-pyrifera_M_contig119197.3956.1|Name=mRNA_M-pyrifera_M_contig119197.3956.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
INWLAEGIVPSGTYGFLGGPYKSLKTWFSVMLAMCISCGAPFLGKKTRKS
RVLFYSGEASEFCLKRITDSLYEACAINPWDCEIEFKTEVPNIRDKAWLI
RLWRKIRKDQIDLLIIDPLYKSTGSVNSSNLFSVGESLKPFSSIC
back to top

mRNA from alignment at M-pyrifera_M_contig119197:112..546+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119197.3956.1 ID=mRNA_M-pyrifera_M_contig119197.3956.1|Name=mRNA_M-pyrifera_M_contig119197.3956.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig119197:112..546+ (Macrocystis pyrifera P11B4 male)
ATCAACTGGCTGGCTGAAGGCATCGTGCCGTCTGGTACGTACGGGTTTCT
TGGCGGACCATACAAGTCGCTGAAGACTTGGTTCTCCGTAATGCTTGCTA
TGTGCATTTCGTGCGGTGCTCCCTTCCTGGGTAAAAAAACCCGAAAGTCG
CGAGTCCTGTTCTACTCGGGCGAAGCTTCGGAGTTCTGCCTAAAGCGTAT
TACGGATTCGCTCTACGAAGCGTGTGCTATCAACCCTTGGGATTGTGAGA
TTGAATTCAAGACAGAGGTACCCAACATCCGCGACAAGGCGTGGTTGATT
CGCCTCTGGAGAAAGATTCGGAAAGACCAGATTGACCTACTCATTATCGA
CCCGCTGTACAAGTCGACTGGCTCAGTTAACTCAAGTAACCTTTTCAGCG
TTGGTGAATCGCTCAAGCCATTTTCGTCAATCTGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig119197:112..546+

>mRNA_M-pyrifera_M_contig119197.3956.1 ID=mRNA_M-pyrifera_M_contig119197.3956.1|Name=mRNA_M-pyrifera_M_contig119197.3956.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig119197:112..546+ (Macrocystis pyrifera P11B4 male)
ATCAACTGGCTGGCTGAAGGCATCGTGCCGTCTGGTACGTACGGGTTTCT
TGGCGGACCATACAAGTCGCTGAAGACTTGGTTCTCCGTAATGCTTGCTA
TGTGCATTTCGTGCGGTGCTCCCTTCCTGGGTAAAAAAACCCGAAAGTCG
CGAGTCCTGTTCTACTCGGGCGAAGCTTCGGAGTTCTGCCTAAAGCGTAT
TACGGATTCGCTCTACGAAGCGTGTGCTATCAACCCTTGGGATTGTGAGA
TTGAATTCAAGACAGAGGTACCCAACATCCGCGACAAGGCGTGGTTGATT
CGCCTCTGGAGAAAGATTCGGAAAGACCAGATTGACCTACTCATTATCGA
CCCGCTGTACAAGTCGACTGGCTCAGTTAACTCAAGTAACCTTTTCAGCG
TTGGTGAATCGCTCAAGCCATTTTCGTCAATCTGCATCAACTGGCTGGCT
GAAGGCATCGTGCCGTCTGGTACGTACGGGTTTCTTGGCGGACCATACAA
GTCGCTGAAGACTTGGTTCTCCGTAATGCTTGCTATGTGCATTTCGTGCG
GTGCTCCCTTCCTGGGTAAAAAAACCCGAAAGTCGCGAGTCCTGTTCTAC
TCGGGCGAAGCTTCGGAGTTCTGCCTAAAGCGTATTACGGATTCGCTCTA
CGAAGCGTGTGCTATCAACCCTTGGGATTGTGAGATTGAATTCAAGACAG
AGGTACCCAACATCCGCGACAAGGCGTGGTTGATTCGCCTCTGGAGAAAG
ATTCGGAAAGACCAGATTGACCTACTCATTATCGACCCGCTGTACAAGTC
GACTGGCTCAGTTAACTCAAGTAACCTTTTCAGCGTTGGTGAATCGCTCA
AGCCATTTTCGTCAATCTGC
back to top