mRNA_M-pyrifera_M_contig119192.3954.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119192.3954.1
Unique NamemRNA_M-pyrifera_M_contig119192.3954.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119192.3954.1 vs. uniprot
Match: A0A2E7KLH5_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KLH5_9PLAN)

HSP 1 Score: 297 bits (760), Expect = 7.180e-102
Identity = 143/154 (92.86%), Postives = 143/154 (92.86%), Query Frame = 1
Query:    1 MNFLIYRYQCGSCQCWFEHYEMTPVVYGEFLMRSETRRAERYLNGLTDPVYEEVAQLLRLETSVGSRSDREQSDLLQTIFGVACDPAEDGGLFQMNLLPRCPDCG--------ATEPPRIVDLEIPHVTHHRWNALNQAEKLLVLENELKQRGF 438
            MNFLIYRYQCGSCQCWFEHYEMTPVVYGEFLMRSETRRAERYLNGLTDPVYEEVAQLLRLETSVGSRSDREQSDLLQTIFGVACDP  DGGLFQMNLLPRCPDCG        A EPPRIVDLEIPHVTHHRWNALNQAEKLLVLENELKQRGF
Sbjct:    1 MNFLIYRYQCGSCQCWFEHYEMTPVVYGEFLMRSETRRAERYLNGLTDPVYEEVAQLLRLETSVGSRSDREQSDLLQTIFGVACDPDVDGGLFQMNLLPRCPDCGGEEISQYVAAEPPRIVDLEIPHVTHHRWNALNQAEKLLVLENELKQRGF 154          
BLAST of mRNA_M-pyrifera_M_contig119192.3954.1 vs. uniprot
Match: A0A1N7JW77_9GAMM (Uncharacterized protein n=1 Tax=Oleibacter marinus TaxID=484498 RepID=A0A1N7JW77_9GAMM)

HSP 1 Score: 93.6 bits (231), Expect = 1.580e-21
Identity = 45/154 (29.22%), Postives = 80/154 (51.95%), Query Frame = 1
Query:    1 MNFLIYRYQCGSCQCWFEHYEMTPVVYGEFLMRSETRRAERYLNGLTDPVYEEVAQLLRLETSVGSRSDREQSDLLQTIFGVACDPAEDGGLFQMNLLPRCPDCGA--------TEPPRIVDLEIPHVTHHRWNALNQAEKLLVLENELKQRGF 438
            M   +  Y C  C   F+   +T   YGEF++RS T     YLN L D  Y+EV ++++    V +  D     L +     ACDP E+G L+++   P CP+CG+        T P   +D+++P+++H +WN  +++EK  ++ +++ +   
Sbjct:    1 MKLYLLEYTCSECSQKFKSPTLTGSPYGEFILRSSTPGKIAYLNALIDKTYDEVDEIMKSSGRVYNIYD-----LYKVYSYSACDPDENGNLYEIGKNPTCPNCGSLDVENWIGTYPEEFIDIDVPYLSHEKWNIKDKSEKTSIIIDKMNKMNL 149          
BLAST of mRNA_M-pyrifera_M_contig119192.3954.1 vs. uniprot
Match: UPI0011B4839F (hypothetical protein n=1 Tax=Blastopirellula retiformator TaxID=2527970 RepID=UPI0011B4839F)

HSP 1 Score: 87.8 bits (216), Expect = 5.840e-20
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  199 RSDREQSDLLQTIFGVACDPAEDGGLFQMNLLPRCPDCGA--------TEPPRIVDLEIPHVTHHRWNALNQAEKLLVLENELKQ 429
            RSD E+SDLLQ +FGVACDPA DG   Q+  +PRCP C A        TEPPR+V+++I HVTH  W  L   EK+ V+ + +++
Sbjct:    3 RSDLERSDLLQLVFGVACDPAADGTRLQIGRMPRCPWCDAAKIENWEATEPPRMVEVDIRHVTHVAWRRLTDLEKVKVVADAVEE 87          
BLAST of mRNA_M-pyrifera_M_contig119192.3954.1 vs. uniprot
Match: A0A8J3VI13_9ACTN (Uncharacterized protein n=1 Tax=Rhizocola hellebori TaxID=1392758 RepID=A0A8J3VI13_9ACTN)

HSP 1 Score: 69.3 bits (168), Expect = 4.750e-12
Identity = 39/154 (25.32%), Postives = 73/154 (47.40%), Query Frame = 1
Query:    1 MNFLIYRYQCGSCQCWFEHYEMTPVV---YGEFLMRSETRRAERYLNGLTDPVYEEVAQLLRLETSVGSRSDREQSDLLQTIFGVACDPAEDGGLFQMNLLP---RCPDCG-----ATEPPRIVDLEIPHVTHHRWNALNQAEKLLVLENELKQ 429
            M F +  Y+C        H    P +   +G FL RS       Y++ ++D  + ++  +LR   +     + E+  ++Q +F + CD    G  + +N  P    C DC      AT+PP  VD+++P V+H RW++++  ++   +E  L +
Sbjct:    1 MRFQLATYRCDPNG----HLFRAPTILGGHGVFLARSSGEGDLAYVDAVSDDAFGDLRSILRGIPTFMQLHELERGKVVQDLFSITCDYDSQGAPYVLNRDPCCIHCSDCNVRFIEATDPPEFVDIDVPEVSHGRWDSMSVTDRRTAIEQALNE 150          
BLAST of mRNA_M-pyrifera_M_contig119192.3954.1 vs. uniprot
Match: A0A1Q3SPD2_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium 39-13 TaxID=1895767 RepID=A0A1Q3SPD2_9GAMM)

HSP 1 Score: 67.4 bits (163), Expect = 2.440e-11
Identity = 38/132 (28.79%), Postives = 71/132 (53.79%), Query Frame = 1
Query:   49 FEHYEMTPVVYGEFLMRSETRRAER-YLNGLTDPVYEEVAQLLRLETSVGSRSDREQSDLLQTIFGVACDPAEDGG-LFQMNLLPRCPDCGATE--------PPRIVDLEIPHVTHHRWNALNQAEKLLVLE 414
            FE  E+    YG  L+R+E    +  Y+N   D  + E+ +L+   + V +  + + +D++Q++F +ACD   DGG  + +    RCP CG           P + V++++  VTH+ W +L++AEK  +++
Sbjct:   16 FEVPELDEFQYGTLLLRNELDEIQCVYVN---DKAFSEIDKLVSGHSLVSNYEEGDLTDIVQSVFSIACDENVDGGGKYNIRTNQRCPKCGTRNMDDWGQIIPLKPVEVDVKEVTHNHWFSLSEAEKKSLVD 144          
BLAST of mRNA_M-pyrifera_M_contig119192.3954.1 vs. uniprot
Match: A0A0Q9YYD7_9COXI (Uncharacterized protein n=1 Tax=Candidatus Berkiella aquae TaxID=295108 RepID=A0A0Q9YYD7_9COXI)

HSP 1 Score: 61.2 bits (147), Expect = 5.360e-9
Identity = 37/149 (24.83%), Postives = 74/149 (49.66%), Query Frame = 1
Query:    1 MNFLIYRYQCGSCQCWFEHYEMTPVVYGEFLMRSETRRAERYLNGLTDPVYEEVAQLLRLETSVGSRSDREQSDLLQTIFGVACDPAEDGGLFQMNLLPRCPDCGATE--------PPRIVDLEIPHVTHHRWNALNQAEKLLVLENEL 423
            M   +++Y C +    FE  ++    YG  L+R+E    +    G  +  ++E+ +L+     V    + + +D++Q++F VACD    GG F++     CP C            P + V++++  VTH+ W +L++AEK  +++  +
Sbjct:    1 MILFLWKYTCINGHE-FEVPQLDEFEYGTLLLRNELNEIQYVCLG--NKAFDEIDRLVSGHPLVSHFEEGDLTDVVQSVFSVACDINIHGGPFKIARRQSCPQCSTRMMDDWDQIIPFKPVEVDVKEVTHNHWFSLSEAEKKSLVDTAI 146          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119192.3954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2E7KLH5_9PLAN7.180e-10292.86Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A1N7JW77_9GAMM1.580e-2129.22Uncharacterized protein n=1 Tax=Oleibacter marinus... [more]
UPI0011B4839F5.840e-2049.41hypothetical protein n=1 Tax=Blastopirellula retif... [more]
A0A8J3VI13_9ACTN4.750e-1225.32Uncharacterized protein n=1 Tax=Rhizocola hellebor... [more]
A0A1Q3SPD2_9GAMM2.440e-1128.79Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A0Q9YYD7_9COXI5.360e-924.83Uncharacterized protein n=1 Tax=Candidatus Berkiel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119192contigM-pyrifera_M_contig119192:33..497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score99.4
Seed ortholog evalue1.5e-18
Seed eggNOG ortholog107636.JQNK01000009_gene2989
Hectar predicted targeting categoryother localisation
EggNOG OGs28W9D@1,2ZI9W@2
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons2
Model size441
Cds size441
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815711.3388903-CDS-M-pyrifera_M_contig119192:32..3481622815711.3388903-CDS-M-pyrifera_M_contig119192:32..348Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119192 33..348 +
1692277533.639896-CDS-M-pyrifera_M_contig119192:32..3481692277533.639896-CDS-M-pyrifera_M_contig119192:32..348Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119192 33..348 +
1622815711.3529434-CDS-M-pyrifera_M_contig119192:372..4971622815711.3529434-CDS-M-pyrifera_M_contig119192:372..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119192 373..497 +
1692277533.65236-CDS-M-pyrifera_M_contig119192:372..4971692277533.65236-CDS-M-pyrifera_M_contig119192:372..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119192 373..497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119192.3954.1prot_M-pyrifera_M_contig119192.3954.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119192 33..497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119192.3954.1

>prot_M-pyrifera_M_contig119192.3954.1 ID=prot_M-pyrifera_M_contig119192.3954.1|Name=mRNA_M-pyrifera_M_contig119192.3954.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
MNFLIYRYQCGSCQCWFEHYEMTPVVYGEFLMRSETRRAERYLNGLTDPV
YEEVAQLLRLETSVGSRSDREQSDLLQTIFGVACDPAEDGGLFQMNLLPR
CPDCGATEPPRIVDLEIPHVTHHRWNALNQAEKLLVLENELKQRGF*
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mRNA from alignment at M-pyrifera_M_contig119192:33..497+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119192.3954.1 ID=mRNA_M-pyrifera_M_contig119192.3954.1|Name=mRNA_M-pyrifera_M_contig119192.3954.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig119192:33..497+ (Macrocystis pyrifera P11B4 male)
ATGAATTTTCTGATTTACCGCTATCAGTGCGGGAGCTGTCAGTGCTGGTT TGAGCATTACGAGATGACTCCCGTTGTCTATGGTGAGTTTCTGATGCGGA GTGAAACGCGGCGGGCGGAACGCTATTTAAATGGGCTCACCGACCCGGTG TATGAGGAAGTCGCTCAATTACTTCGCCTGGAAACGAGCGTCGGGAGCCG GAGTGACAGGGAACAGTCCGATCTTTTGCAAACCATTTTTGGGGTGGCCT GTGATCCGGCTGAGGATGGTGGGTTATTCCAAATGAATCTGCTGCCCCGT TGTCCTGATTGCGGGGGTGAGTAGATCAGCCATTAGGTAGCCACCGAGCC ACCCCGAATTGTTGATCTGGAGATTCCTCACGTAACACATCACCGGTGGA ATGCGCTGAATCAGGCAGAGAAGCTTCTGGTTCTGGAGAATGAACTCAAA CAACGTGGGTTTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119192:33..497+

>mRNA_M-pyrifera_M_contig119192.3954.1 ID=mRNA_M-pyrifera_M_contig119192.3954.1|Name=mRNA_M-pyrifera_M_contig119192.3954.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig119192:33..497+ (Macrocystis pyrifera P11B4 male)
ATGAATTTTCTGATTTACCGCTATCAGTGCGGGAGCTGTCAGTGCTGGTT
TGAGCATTACGAGATGACTCCCGTTGTCTATGGTGAGTTTCTGATGCGGA
GTGAAACGCGGCGGGCGGAACGCTATTTAAATGGGCTCACCGACCCGGTG
TATGAGGAAGTCGCTCAATTACTTCGCCTGGAAACGAGCGTCGGGAGCCG
GAGTGACAGGGAACAGTCCGATCTTTTGCAAACCATTTTTGGGGTGGCCT
GTGATCCGGCTGAGGATGGTGGGTTATTCCAAATGAATCTGCTGCCCCGT
TGTCCTGATTGCGGGGATGAATTTTCTGATTTACCGCTATCAGTGCGGGA
GCTGTCAGTGCTGGTTTGAGCATTACGAGATGACTCCCGTTGTCTATGGT
GAGTTTCTGATGCGGAGTGAAACGCGGCGGGCGGAACGCTATTTAAATGG
GCTCACCGACCCGGTGTATGAGGAAGTCGCTCAATTACTTCGCCTGGAAA
CGAGCGTCGGGAGCCGGAGTGACAGGGAACAGTCCGATCTTTTGCAAACC
ATTTTTGGGGTGGCCTGTGATCCGGCTGAGGATGGTGGGTTATTCCAAAT
GAATCTGCTGCCCCGTTGTCCTGATTGCGGGGCCACCGAGCCACCCCGAA
TTGTTGATCTGGAGATTCCTCACGTAACACATCACCGGTGGAATGCGCTG
AATCAGGCAGAGAAGCTTCTGGTTCTGGAGAATGAACTCAAACAACGTGG
GTTTTGACCACCGAGCCACCCCGAATTGTTGATCTGGAGATTCCTCACGT
AACACATCACCGGTGGAATGCGCTGAATCAGGCAGAGAAGCTTCTGGTTC
TGGAGAATGAACTCAAACAACGTGGGTTTTGA
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