mRNA_M-pyrifera_M_contig119159.3943.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119159.3943.1
Unique NamemRNA_M-pyrifera_M_contig119159.3943.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119159.3943.1 vs. uniprot
Match: A0A5A8CUS7_CAFRO (DNA replication licensing factor MCM3 n=5 Tax=Sar TaxID=2698737 RepID=A0A5A8CUS7_CAFRO)

HSP 1 Score: 95.5 bits (236), Expect = 5.310e-21
Identity = 52/90 (57.78%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 DVLSVDFLKRYFAFAK-RLPASLEDEARERISSLYNELRQKSEQRMMPVTVRTLEALIRLSTAHAKLRLSTKVLREDVDAAYEVLAFSIF 267
            ++L +DFLK++ +FAK R+   L ++ARERI++ YN+LRQKSE R MPVT RTLE +IRLSTAHAK RLS KV   DV  A  +L F+ F
Sbjct:  604 ELLDIDFLKKFVSFAKARVRPELTEDARERIAAAYNDLRQKSEARAMPVTARTLETIIRLSTAHAKARLSNKVEASDVTQAVSILQFAFF 693
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BLAST of mRNA_M-pyrifera_M_contig119159.3943.1 vs. uniprot
Match: A0A812WGK8_9DINO (DNA helicase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WGK8_9DINO)

HSP 1 Score: 95.5 bits (236), Expect = 5.350e-21
Identity = 52/90 (57.78%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 DVLSVDFLKRYFAFAK-RLPASLEDEARERISSLYNELRQKSEQRMMPVTVRTLEALIRLSTAHAKLRLSTKVLREDVDAAYEVLAFSIF 267
            ++L +DFLK++ +FAK R+   L ++ARERI++ YN+LRQKSE R MPVT RTLE +IRLSTAHAK RLS KV   DV  A  +L F+ F
Sbjct:  279 ELLDIDFLKKFVSFAKARVRPELTEDARERIAAAYNDLRQKSEARAMPVTARTLETIIRLSTAHAKARLSNKVEASDVTQAVSILQFAFF 368
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BLAST of mRNA_M-pyrifera_M_contig119159.3943.1 vs. uniprot
Match: A0A4D9D854_9STRA (DNA replication licensing factor MCM3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D854_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.270e-17
Identity = 44/90 (48.89%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 DVLSVDFLKRYFAFAK-RLPASLEDEARERISSLYNELRQKSEQRMMPVTVRTLEALIRLSTAHAKLRLSTKVLREDVDAAYEVLAFSIF 267
            D+L+ +FL++Y  +AK R+   L  EA E +++ Y+ LR K E+R +P+T RTLE LIRLSTAHAK+RLS ++ R+D + A E+LAF+++
Sbjct:  612 DILTKNFLRKYIFYAKSRIQPRLTSEAEEAVANYYSTLRSKQERRTVPITPRTLETLIRLSTAHAKVRLSNEITRDDCERAMELLAFALY 701
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BLAST of mRNA_M-pyrifera_M_contig119159.3943.1 vs. uniprot
Match: UPI000644B56E (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644B56E)

HSP 1 Score: 85.5 bits (210), Expect = 1.730e-17
Identity = 46/90 (51.11%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:    1 DVLSVDFLKRYFAFAKRL-PASLEDEARERISSLYNELRQKSEQRMMPVTVRTLEALIRLSTAHAKLRLSTKVLREDVDAAYEVLAFSIF 267
            ++LS+ F+++Y  FAK L   SL DEA+E I S Y ELR K E++ +P+T RTLE LIRLS+AHAK RLS  + + D + AYE+L  ++F
Sbjct:  585 EILSIPFIQKYIRFAKNLIKPSLSDEAKEYIVSSYTELRSKEEEKTLPITTRTLETLIRLSSAHAKCRLSPIIEKLDSEVAYEILQHALF 674
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BLAST of mRNA_M-pyrifera_M_contig119159.3943.1 vs. uniprot
Match: W7UAY8_9STRA (DNA replication licensing factor MCM3 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UAY8_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.140e-17
Identity = 44/90 (48.89%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 DVLSVDFLKRYFAFAK-RLPASLEDEARERISSLYNELRQKSEQRMMPVTVRTLEALIRLSTAHAKLRLSTKVLREDVDAAYEVLAFSIF 267
            D+L+ +FL++Y  +AK R+   L  EA + I++ Y+ LR K E+R +P+T RTLE LIRLSTAHAK+RLS ++ R+D + A E+LAF+++
Sbjct:  228 DILTKNFLRKYIFYAKSRIQPRLTSEAEDAIANYYSTLRSKQERRTVPITPRTLETLIRLSTAHAKVRLSNEITRDDCERAMELLAFALY 317
[Close]
BLAST of mRNA_M-pyrifera_M_contig119159.3943.1 vs. uniprot
Match: A0A7S1G4Y5_9STRA (DNA replication licensing factor MCM3 (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4Y5_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.230e-17
Identity = 49/90 (54.44%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:    1 DVLSVDFLKRYFAFAK-RLPASLEDEARERISSLYNELRQKSEQRMMPVTVRTLEALIRLSTAHAKLRLSTKVLREDVDAAYEVLAFSIF 267
            ++LS+DF K+Y  +AK R    L DEA E I++ YN +RQK + + MPVTVR LE LIRLSTAHAK RL  KV  +DV AA  VL F+++
Sbjct:  247 ELLSIDFCKKYVHYAKQRSNPQLTDEACELIATEYNNMRQKQDAKTMPVTVRALETLIRLSTAHAKARLGRKVREDDVQAATGVLNFALY 336
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BLAST of mRNA_M-pyrifera_M_contig119159.3943.1 vs. uniprot
Match: A0A6A3C7E8_HIBSY (DNA replication licensing factor MCM3 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C7E8_HIBSY)

HSP 1 Score: 84.0 bits (206), Expect = 5.970e-17
Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:    1 DVLSVDFLKRYFAFAK-RLPASLEDEARERISSLYNELRQKSEQRM----MPVTVRTLEALIRLSTAHAKLRLSTKVLREDVDAAYEVLAFSIF 267
            D L+++FLK+Y  +AK R+   L DEA E+I+  Y ELR  S        +P+T RTLE +IRLSTAHAKL+LS KV ++DVDAA +VL F+I+
Sbjct:  519 DTLTINFLKKYIHYAKHRIQPDLTDEASEQIAIAYAELRTASSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVTKDDVDAALKVLNFAIY 612
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BLAST of mRNA_M-pyrifera_M_contig119159.3943.1 vs. uniprot
Match: UPI0010A9C427 (DNA replication licensing factor MCM3-like n=4 Tax=Maleae TaxID=721813 RepID=UPI0010A9C427)

HSP 1 Score: 83.6 bits (205), Expect = 8.190e-17
Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    1 DVLSVDFLKRYFAFAK-RLPASLEDEARERISSLYNELRQKSEQRM----MPVTVRTLEALIRLSTAHAKLRLSTKVLREDVDAAYEVLAFSIF 267
            D L++ FLK+Y  +AK R+   L DEA E+I++ Y ELR  S        +P+T RTLE +IRLSTAHAKL+LS KV + DVDAA +VL F+I+
Sbjct:  545 DTLTIKFLKKYIHYAKNRIEPDLTDEASEQIATTYAELRNASSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVDAALKVLNFAIY 638
[Close]
BLAST of mRNA_M-pyrifera_M_contig119159.3943.1 vs. uniprot
Match: A0A540L437_MALBA (DNA helicase n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540L437_MALBA)

HSP 1 Score: 83.6 bits (205), Expect = 8.290e-17
Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    1 DVLSVDFLKRYFAFAK-RLPASLEDEARERISSLYNELRQKSEQRM----MPVTVRTLEALIRLSTAHAKLRLSTKVLREDVDAAYEVLAFSIF 267
            D L++ FLK+Y  +AK R+   L DEA E+I++ Y ELR  S        +P+T RTLE +IRLSTAHAKL+LS KV + DVDAA +VL F+I+
Sbjct:  492 DTLTIKFLKKYIHYAKNRIEPDLTDEASEQIATAYAELRNASSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVDAALKVLNFAIY 585
[Close]
BLAST of mRNA_M-pyrifera_M_contig119159.3943.1 vs. uniprot
Match: A0A540LNQ5_MALBA (DNA helicase n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540LNQ5_MALBA)

HSP 1 Score: 83.6 bits (205), Expect = 8.300e-17
Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    1 DVLSVDFLKRYFAFAK-RLPASLEDEARERISSLYNELRQKSEQRM----MPVTVRTLEALIRLSTAHAKLRLSTKVLREDVDAAYEVLAFSIF 267
            D L++ FLK+Y  +AK R+   L DEA E+I++ Y ELR  S        +P+T RTLE +IRLSTAHAKL+LS KV + DVDAA +VL F+I+
Sbjct:  551 DTLTIKFLKKYIHYAKNRIEPDLTDEASEQIATAYAELRNASSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVDAALKVLNFAIY 644
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119159.3943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CUS7_CAFRO5.310e-2157.78DNA replication licensing factor MCM3 n=5 Tax=Sar ... [more]
A0A812WGK8_9DINO5.350e-2157.78DNA helicase n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A4D9D854_9STRA1.270e-1748.89DNA replication licensing factor MCM3 n=1 Tax=Nann... [more]
UPI000644B56E1.730e-1751.11hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
W7UAY8_9STRA2.140e-1748.89DNA replication licensing factor MCM3 n=2 Tax=Nann... [more]
A0A7S1G4Y5_9STRA2.230e-1754.44DNA replication licensing factor MCM3 (Fragment) n... [more]
A0A6A3C7E8_HIBSY5.970e-1752.13DNA replication licensing factor MCM3 n=1 Tax=Hibi... [more]
UPI0010A9C4278.190e-1752.13DNA replication licensing factor MCM3-like n=4 Tax... [more]
A0A540L437_MALBA8.290e-1752.13DNA helicase n=1 Tax=Malus baccata TaxID=106549 Re... [more]
A0A540LNQ5_MALBA8.300e-1752.13DNA helicase n=1 Tax=Malus baccata TaxID=106549 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119159contigM-pyrifera_M_contig119159:266..532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score87.0
Seed ortholog evalue4.7e-15
Seed eggNOG ortholog57918.XP_004293500.1
Preferred nameMCM3
KEGG koko:K02541
KEGG Pathwayko03030,ko04110,ko04111,ko04113,map03030,map04110,map04111,map04113
KEGG ModuleM00285
Hectar predicted targeting categoryother localisation
GOsGO:0000347,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0032392,GO:0032508,GO:0032991,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0051276,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1901576
EggNOG free text desc.Belongs to the MCM family
EggNOG OGs37MT8@33090,3GAV5@35493,4JFYK@91835,COG1241@1,KOG0479@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.7303095-CDS-M-pyrifera_M_contig119159:265..5321622815710.7303095-CDS-M-pyrifera_M_contig119159:265..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119159 266..532 -
1692277533.367457-CDS-M-pyrifera_M_contig119159:265..5321692277533.367457-CDS-M-pyrifera_M_contig119159:265..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119159 266..532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119159.3943.1prot_M-pyrifera_M_contig119159.3943.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119159 266..532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119159.3943.1

>prot_M-pyrifera_M_contig119159.3943.1 ID=prot_M-pyrifera_M_contig119159.3943.1|Name=mRNA_M-pyrifera_M_contig119159.3943.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
DVLSVDFLKRYFAFAKRLPASLEDEARERISSLYNELRQKSEQRMMPVTV
RTLEALIRLSTAHAKLRLSTKVLREDVDAAYEVLAFSIF
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mRNA from alignment at M-pyrifera_M_contig119159:266..532-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119159.3943.1 ID=mRNA_M-pyrifera_M_contig119159.3943.1|Name=mRNA_M-pyrifera_M_contig119159.3943.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig119159:266..532- (Macrocystis pyrifera P11B4 male)
GATGTTTTGTCAGTAGATTTCTTGAAACGCTACTTTGCATTTGCCAAGCG
TTTGCCAGCTTCTTTGGAAGATGAAGCTCGGGAGCGCATTTCTTCCCTCT
ACAATGAGTTGCGTCAAAAGAGTGAGCAACGCATGATGCCTGTGACTGTC
CGTACATTGGAAGCATTGATTCGTCTCTCCACTGCACATGCCAAGTTGCG
TCTTTCCACCAAGGTTCTCAGAGAAGATGTGGATGCTGCATATGAAGTCC
TTGCATTCTCCATCTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119159:266..532-

>mRNA_M-pyrifera_M_contig119159.3943.1 ID=mRNA_M-pyrifera_M_contig119159.3943.1|Name=mRNA_M-pyrifera_M_contig119159.3943.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig119159:266..532- (Macrocystis pyrifera P11B4 male)
GATGTTTTGTCAGTAGATTTCTTGAAACGCTACTTTGCATTTGCCAAGCG
TTTGCCAGCTTCTTTGGAAGATGAAGCTCGGGAGCGCATTTCTTCCCTCT
ACAATGAGTTGCGTCAAAAGAGTGAGCAACGCATGATGCCTGTGACTGTC
CGTACATTGGAAGCATTGATTCGTCTCTCCACTGCACATGCCAAGTTGCG
TCTTTCCACCAAGGTTCTCAGAGAAGATGTGGATGCTGCATATGAAGTCC
TTGCATTCTCCATCTTCGATGTTTTGTCAGTAGATTTCTTGAAACGCTAC
TTTGCATTTGCCAAGCGTTTGCCAGCTTCTTTGGAAGATGAAGCTCGGGA
GCGCATTTCTTCCCTCTACAATGAGTTGCGTCAAAAGAGTGAGCAACGCA
TGATGCCTGTGACTGTCCGTACATTGGAAGCATTGATTCGTCTCTCCACT
GCACATGCCAAGTTGCGTCTTTCCACCAAGGTTCTCAGAGAAGATGTGGA
TGCTGCATATGAAGTCCTTGCATTCTCCATCTTC
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