mRNA_M-pyrifera_M_contig119147.3938.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119147.3938.1
Unique NamemRNA_M-pyrifera_M_contig119147.3938.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119147.3938.1 vs. uniprot
Match: F2UH33_SALR5 (Aa_trans domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UH33_SALR5)

HSP 1 Score: 101 bits (251), Expect = 5.060e-23
Identity = 47/91 (51.65%), Postives = 65/91 (71.43%), Query Frame = 1 
Query:    1 SWLNERAPRVNVNKAVWYPAVVGLLMKLCIGLLGAWAYVLVRKDGSRVPGSDNILNILANPNNAHWIVWGSFMWNLLTLVPGVPPLSIYIR 273
            SW+NE+  RV+VNKAVW PA+VGL MK+ +GLLG WAY LV  +  R  G+D+ILNIL   N      + +++W++ TL+PG+P L+I IR
Sbjct:  326 SWVNEKKHRVSVNKAVWVPAIVGLFMKVVVGLLGGWAYWLVYNNKPR-EGADDILNILVLQNQPQVTQYSAYLWDVTTLIPGIPVLAIMIR 415
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BLAST of mRNA_M-pyrifera_M_contig119147.3938.1 vs. uniprot
Match: A9V4P5_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V4P5_MONBE)

HSP 1 Score: 100 bits (250), Expect = 5.690e-23
Identity = 44/91 (48.35%), Postives = 65/91 (71.43%), Query Frame = 1 
Query:    1 SWLNERAPRVNVNKAVWYPAVVGLLMKLCIGLLGAWAYVLVRKDGSRVPGSDNILNILANPNNAHWIVWGSFMWNLLTLVPGVPPLSIYIR 273
            SW+NE+   V+VNK+VW PA VGL+MKL  GLLG WA+ L+  DGS  P SD+ILNI+ + +      + +++W++ TL+PG+P L+I +R
Sbjct:  224 SWVNEKRHHVSVNKSVWVPASVGLVMKLLTGLLGGWAFALLLPDGSPRPHSDDILNIILHRDQPEVSQYSAYLWDITTLIPGIPVLAIMVR 314
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BLAST of mRNA_M-pyrifera_M_contig119147.3938.1 vs. uniprot
Match: A0A5A8CYZ7_CAFRO (Aa_trans domain-containing protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CYZ7_CAFRO)

HSP 1 Score: 94.7 bits (234), Expect = 1.050e-20
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 SWLNERAPRVNVNKAVWYPAVVGLLMKLCIGLLGAWAYVLVRKDGSRVPGSDNILNILANPNNAHWIVWGSFMWNLLTLVPGVPPLSIYIR 273
            SWLNE+   V+VN AVW+PA+VG +MKL IGLLGAWA+            +DNIL  LA+P       + S+MWNLLTLVPG+P L+I ++
Sbjct:  282 SWLNEKKSGVSVNSAVWWPALVGFIMKLLIGLLGAWAFA---------HPTDNILTNLASPPMPQVTRYSSYMWNLLTLVPGIPILAIMVK 363
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119147.3938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
F2UH33_SALR55.060e-2351.65Aa_trans domain-containing protein n=1 Tax=Salping... [more]
A9V4P5_MONBE5.690e-2348.35Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A5A8CYZ7_CAFRO1.050e-2051.65Aa_trans domain-containing protein n=3 Tax=Sar Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119147contigM-pyrifera_M_contig119147:221..493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score102.1
Seed ortholog evalue1.4e-19
Seed eggNOG ortholog946362.XP_004991347.1
Hectar predicted targeting categorysignal peptide
EggNOG OGs2C6EX@1,2QSDW@2759,39YX6@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.5031419-CDS-M-pyrifera_M_contig119147:220..4931622815710.5031419-CDS-M-pyrifera_M_contig119147:220..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119147 221..493 +
1692277533.2904415-CDS-M-pyrifera_M_contig119147:220..4931692277533.2904415-CDS-M-pyrifera_M_contig119147:220..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119147 221..493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119147.3938.1prot_M-pyrifera_M_contig119147.3938.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119147 221..493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119147.3938.1

>prot_M-pyrifera_M_contig119147.3938.1 ID=prot_M-pyrifera_M_contig119147.3938.1|Name=mRNA_M-pyrifera_M_contig119147.3938.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
SWLNERAPRVNVNKAVWYPAVVGLLMKLCIGLLGAWAYVLVRKDGSRVPG
SDNILNILANPNNAHWIVWGSFMWNLLTLVPGVPPLSIYIR
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mRNA from alignment at M-pyrifera_M_contig119147:221..493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119147.3938.1 ID=mRNA_M-pyrifera_M_contig119147.3938.1|Name=mRNA_M-pyrifera_M_contig119147.3938.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig119147:221..493+ (Macrocystis pyrifera P11B4 male)
AGCTGGTTGAACGAACGCGCGCCTCGCGTCAACGTGAACAAGGCCGTGTG
GTATCCTGCGGTGGTGGGTTTGCTGATGAAGCTCTGCATTGGGCTGCTGG
GAGCGTGGGCCTATGTGCTCGTGCGCAAGGATGGGTCTCGTGTCCCCGGG
TCTGACAACATCCTCAACATTCTCGCCAACCCAAACAACGCACACTGGAT
CGTCTGGGGATCGTTCATGTGGAACCTCCTCACCCTCGTCCCAGGAGTGC
CACCTCTCTCCATCTACATCCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119147:221..493+

>mRNA_M-pyrifera_M_contig119147.3938.1 ID=mRNA_M-pyrifera_M_contig119147.3938.1|Name=mRNA_M-pyrifera_M_contig119147.3938.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig119147:221..493+ (Macrocystis pyrifera P11B4 male)
AGCTGGTTGAACGAACGCGCGCCTCGCGTCAACGTGAACAAGGCCGTGTG
GTATCCTGCGGTGGTGGGTTTGCTGATGAAGCTCTGCATTGGGCTGCTGG
GAGCGTGGGCCTATGTGCTCGTGCGCAAGGATGGGTCTCGTGTCCCCGGG
TCTGACAACATCCTCAACATTCTCGCCAACCCAAACAACGCACACTGGAT
CGTCTGGGGATCGTTCATGTGGAACCTCCTCACCCTCGTCCCAGGAGTGC
CACCTCTCTCCATCTACATCCGAAGCTGGTTGAACGAACGCGCGCCTCGC
GTCAACGTGAACAAGGCCGTGTGGTATCCTGCGGTGGTGGGTTTGCTGAT
GAAGCTCTGCATTGGGCTGCTGGGAGCGTGGGCCTATGTGCTCGTGCGCA
AGGATGGGTCTCGTGTCCCCGGGTCTGACAACATCCTCAACATTCTCGCC
AACCCAAACAACGCACACTGGATCGTCTGGGGATCGTTCATGTGGAACCT
CCTCACCCTCGTCCCAGGAGTGCCACCTCTCTCCATCTACATCCGA
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