mRNA_M-pyrifera_M_contig119119.3930.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig119119.3930.1 vs. uniprot
Match: Q0BCY0_BURCM (AAA domain protein n=74 Tax=Burkholderiaceae TaxID=119060 RepID=Q0BCY0_BURCM) HSP 1 Score: 55.1 bits (131), Expect = 6.540e-7 Identity = 35/103 (33.98%), Postives = 53/103 (51.46%), Query Frame = 1
Query: 4 GGDEPVFFDRGRLDGVAYCRIYGSAVPAPLEQACQSLPYTRVLLLDTLSRFERRSQSGRTSNRERSLAIKAALRDVYTEHGLKPIELPEMSLEARLEATLAAL 312
G PVFFDRG D + Y R+ G AVPA E A + Y R + + + R + + ++ A+ D YT +G + IELP +S++AR+ + AL
Sbjct: 88 GARGPVFFDRGVPDVIGYLRLTGLAVPAHAEAAARRFRYHRRVFIAPPWPEIYTQDAERRQDFDEAVRTYDAMVDCYTAYGYRLIELPRVSVKARVRFVMDAL 190
BLAST of mRNA_M-pyrifera_M_contig119119.3930.1 vs. uniprot
Match: B1YUE0_BURA4 (ATPase-like protein n=9 Tax=Burkholderia TaxID=32008 RepID=B1YUE0_BURA4) HSP 1 Score: 53.5 bits (127), Expect = 2.460e-6 Identity = 34/99 (34.34%), Postives = 51/99 (51.52%), Query Frame = 1
Query: 16 PVFFDRGRLDGVAYCRIYGSAVPAPLEQACQSLPYTRVLLLDTLSRFERRSQSGRTSNRERSLAIKAALRDVYTEHGLKPIELPEMSLEARLEATLAAL 312
PVFFDRG D + Y R+ G AVPA E A + Y R + + + R + ++ A+ D YT +G + IELP +S++AR+ + AL
Sbjct: 92 PVFFDRGVPDVIGYLRLTGLAVPAHAEAAARRFRYHRRVFIAPPWPEIYAQDAERRQDFAEAVRTYDAMVDCYTAYGYRLIELPRVSVKARVRFVMDAL 190
BLAST of mRNA_M-pyrifera_M_contig119119.3930.1 vs. uniprot
Match: A2VWD7_9BURK (AAA_28 domain-containing protein n=28 Tax=Burkholderiaceae TaxID=119060 RepID=A2VWD7_9BURK) HSP 1 Score: 51.6 bits (122), Expect = 1.430e-5 Identity = 32/99 (32.32%), Postives = 50/99 (50.51%), Query Frame = 1
Query: 16 PVFFDRGRLDGVAYCRIYGSAVPAPLEQACQSLPYTRVLLLDTLSRFERRSQSGRTSNRERSLAIKAALRDVYTEHGLKPIELPEMSLEARLEATLAAL 312
PVFFDRG D + Y ++ G AVPA E A + Y R + + + R + ++ A+ D YT +G + IELP +S++AR+ + L
Sbjct: 103 PVFFDRGVPDVIGYLKLTGLAVPAHAEAAARRFRYHRRVFIAPPWPDIYAQDAERRQDFAEAVRTHDAMVDCYTSYGYRLIELPRVSVKARVRFVMDTL 201
BLAST of mRNA_M-pyrifera_M_contig119119.3930.1 vs. uniprot
Match: B4E737_BURCJ (AAA_28 domain-containing protein n=99 Tax=Burkholderiaceae TaxID=119060 RepID=B4E737_BURCJ) HSP 1 Score: 51.2 bits (121), Expect = 1.620e-5 Identity = 32/99 (32.32%), Postives = 50/99 (50.51%), Query Frame = 1
Query: 16 PVFFDRGRLDGVAYCRIYGSAVPAPLEQACQSLPYTRVLLLDTLSRFERRSQSGRTSNRERSLAIKAALRDVYTEHGLKPIELPEMSLEARLEATLAAL 312
PVFFDRG D + Y ++ G VPA E A + Y R + + + R + ++ A+ D YT +G + IELP +S++AR+ + AL
Sbjct: 83 PVFFDRGVPDVIGYLKLTGLTVPAHAEAAARRFRYHRRVFIAPPWPDIYAQDTERRQDFAEAVRTYDAMVDCYTSYGYRLIELPRVSVKARVRFVMDAL 181
BLAST of mRNA_M-pyrifera_M_contig119119.3930.1 vs. uniprot
Match: A0A2N2YD43_9BACT (ATPase n=1 Tax=Bacteroidetes bacterium HGW-Bacteroidetes-2 TaxID=2013688 RepID=A0A2N2YD43_9BACT) HSP 1 Score: 50.8 bits (120), Expect = 2.180e-5 Identity = 32/95 (33.68%), Postives = 45/95 (47.37%), Query Frame = 1
Query: 19 VFFDRGRLDGVAYCRIYGSAVPAPLEQACQSLPYTRVLLLDTLSRFERRSQSGRTSNRERSLAIKAALRDVYTEHGLKPIELPEMSLEARLEATL 303
VF+DRG D VAY + + P + AC+ PY V +L + R N E + I L Y + PIE+P ++LEAR+E L
Sbjct: 81 VFYDRGMHDVVAYLDYFQTEYPKGFQNACKQHPYDLVFILPPWEEIYIQDNE-RYENFEEAKKIHNYLERTYKNYAYIPIEVPRLTLEARVEFIL 174
BLAST of mRNA_M-pyrifera_M_contig119119.3930.1 vs. uniprot
Match: UPI000E1D3019 (ATP-binding protein n=1 Tax=Winogradskyella aurantiaca TaxID=2219558 RepID=UPI000E1D3019) HSP 1 Score: 49.3 bits (116), Expect = 7.890e-5 Identity = 33/100 (33.00%), Postives = 47/100 (47.00%), Query Frame = 1
Query: 19 VFFDRGRLDGVAYCRIYGSAVPAPLEQACQSLPYTRVLLLDTLSRFERRSQSGRTSNRERSLAIKAALRDVYTEHGLKPIELPEMSLEARLEATLAALRI 318
VF+DRG D +AY G P CQ+ Y V++L+ R R R E++L I L D Y +G ELPE S+ R++ L +L +
Sbjct: 80 VFYDRGIPDVLAYMDYIGDTYPQEFIDQCQNHRYDSVIILNPWKRIYSRDGE-RYETFEQALQIHRHLVDTYKHYGYALTELPEDSVNNRIQILLDSLNL 178
BLAST of mRNA_M-pyrifera_M_contig119119.3930.1 vs. uniprot
Match: UPI001CCCEF1B (ATP-binding protein n=1 Tax=Robertkochia sp. 3YJGBD-33 TaxID=2873700 RepID=UPI001CCCEF1B) HSP 1 Score: 49.3 bits (116), Expect = 7.980e-5 Identity = 34/97 (35.05%), Postives = 44/97 (45.36%), Query Frame = 1
Query: 13 EPVFFDRGRLDGVAYCRIYGSAVPAPLEQACQSLPYTRVLLLDTLSRFERRSQSGRTSNRERSLAIKAALRDVYTEHGLKPIELPEMSLEARLEATL 303
+PVFFDRG D VAY G P + C+ Y V LL R S S R N E++ I L Y G +E+P+ S+ R+E L
Sbjct: 81 DPVFFDRGIPDVVAYLDYIGDEYPDWFSEPCKVFRYDTVFLLPPWEDIYR-SDSERYENYEQASLIHDHLEKTYKRFGYNLLEVPKDSVSQRIEFIL 176 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119119.3930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig119119.3930.1 >prot_M-pyrifera_M_contig119119.3930.1 ID=prot_M-pyrifera_M_contig119119.3930.1|Name=mRNA_M-pyrifera_M_contig119119.3930.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp AGGDEPVFFDRGRLDGVAYCRIYGSAVPAPLEQACQSLPYTRVLLLDTLSback to top mRNA from alignment at M-pyrifera_M_contig119119:208..528- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig119119.3930.1 ID=mRNA_M-pyrifera_M_contig119119.3930.1|Name=mRNA_M-pyrifera_M_contig119119.3930.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig119119:208..528- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig119119:208..528- >mRNA_M-pyrifera_M_contig119119.3930.1 ID=mRNA_M-pyrifera_M_contig119119.3930.1|Name=mRNA_M-pyrifera_M_contig119119.3930.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig119119:208..528- (Macrocystis pyrifera P11B4 male)back to top |