mRNA_M-pyrifera_M_contig119102.3923.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119102.3923.1
Unique NamemRNA_M-pyrifera_M_contig119102.3923.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119102.3923.1 vs. uniprot
Match: A0A485LQR5_9STRA (Aste57867_23886 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQR5_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 6.690e-18
Identity = 59/142 (41.55%), Postives = 75/142 (52.82%), Query Frame = 1
Query:    1 LPPVEWIPHAASSSAVLPLQRVSRVLPQALLSGATSAAWYPKRHMVSEKYVPSLASRLLHPGY---AAQKDGVGFTRRRWSCAHGSFFAGVTSASRLDYIVGKFLEIPASGSLLVANRAAQPHLEALGFEDGVSMLPFNDTD 417
            LP + W+PHAAS++        S V P+ LL GAT A +YP R   +           +HPGY   A+  +    T       H S+ A  T  SRLDY+V K  EIPA+GSLL+ NR A P L ALGF DGV  L ++  D
Sbjct:  493 LPRLHWLPHAASAAFSYDDIHPSPV-PRVLLVGATDARYYPLRAWAAASSQTLSIDVHIHPGYEGFASAAEAAAQTAAYARLGH-SYLATFTDTSRLDYLVAKVFEIPATGSLLLVNRDAAPLLAALGFVDGVHYLGYDPHD 632          
BLAST of mRNA_M-pyrifera_M_contig119102.3923.1 vs. uniprot
Match: A0A485KAP6_9STRA (Aste57867_1462 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KAP6_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.380e-11
Identity = 50/140 (35.71%), Postives = 68/140 (48.57%), Query Frame = 1
Query:   10 VEWIPHAASSSAVLPLQRVSRVLPQALLSGATSAAWYPKRHMVSEKYVPSLASRL-----LHPGYAAQKDG--VGFTRRRWSCAHGSFFAGVTSASRLDYIVGKFLEIPASGSLLVANRAAQPHLEALGFEDGVSMLPFN 408
            V W+PHAASS  +      + V P+ LL+G T    YP R      +  ++AS L     +HPGY               +S    S+    T   RLDYIV K  EIPA+G+LL+ NR A   +  LGF DGV  + ++
Sbjct:  388 VLWLPHAASSVFLFDQLHPAPV-PRVLLTGVTDPTIYPLR-----AWAQTMASSLPIDVHVHPGYEGSDTASEAAAQASSFSTLVHSYLVAFTDTLRLDYIVAKVFEIPATGALLLLNRDAATVVAKLGFVDGVHYMGYD 521          
BLAST of mRNA_M-pyrifera_M_contig119102.3923.1 vs. uniprot
Match: A0A024UVA1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UVA1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.200e-10
Identity = 51/146 (34.93%), Postives = 73/146 (50.00%), Query Frame = 1
Query:   10 VEWIPHAASSSAVL------PLQRVSRVLPQALLSGATSAAWYPKRHMVSEKYVPSLASRLL-HPGY---AAQKDGVGFTRRRWSCAHGSFFAGVTSASRLDYIVGKFLEIPASGSLLVANRAAQPHLEALGFEDGVSMLPFNDTD 417
            + W+PHAA+S+         P+ RV       LL GA +A +YP R   ++K V  L   +  HPGY   A+  + +  T       H S+ A  T  SRLD++V K  EIPA+GSLL+ N      +  LGF DG   + ++  D
Sbjct:  335 IAWLPHAANSAFQYDNIHPAPVTRV-------LLVGAANAEFYPLRAW-AQKQVGKLPLDVHPHPGYEGYASDTEALAQTTSYARLVH-SYVATFTCTSRLDFVVAKIFEIPATGSLLLINHDVADLMARLGFADGTHYIGYDPHD 471          
BLAST of mRNA_M-pyrifera_M_contig119102.3923.1 vs. uniprot
Match: A0A1V0SAJ9_9VIRU (Glycosyltransferases group 1 n=1 Tax=Catovirus CTV1 TaxID=1977631 RepID=A0A1V0SAJ9_9VIRU)

HSP 1 Score: 58.5 bits (140), Expect = 2.170e-7
Identity = 40/134 (29.85%), Postives = 64/134 (47.76%), Query Frame = 1
Query:   10 VEWIPHAASSSAVLPLQRVSRVLPQALLSGATSAAWYPKRHMVS--EKYVPSLASRLLHPGYAA--QKDGVGFTRRRWSCAHGSFFAGVTSASRLDYIVGKFLEIPASGSLLVANRAAQPHLEALGFEDGVSML 399
            V W  HA ++  ++         P+ LLSGA   A+  +++M+        +  + L HPGY      DG+    + ++    S+    T      YIV K+ EIPA+GSLL+A       LE +GF DG++ +
Sbjct:  130 VIWCQHAYTNDYLINFN--DNPQPKILLSGAIGTAYPFRKYMLKLQRSECKNQINYLKHPGYKLFDYDDGINKVGKNYATMLNSYLCCFTDCLVHGYIVSKYYEIPATGSLLLAQDPPGDKLEKIGFMDGINYI 261          
BLAST of mRNA_M-pyrifera_M_contig119102.3923.1 vs. uniprot
Match: A0A6C0J7G4_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0J7G4_9ZZZZ)

HSP 1 Score: 51.6 bits (122), Expect = 6.040e-5
Identity = 39/136 (28.68%), Postives = 66/136 (48.53%), Query Frame = 1
Query:   16 WIPHAASSSAVLPLQRVSRVLPQALLSGATSAAWYPKRH--MVSEKYVPSLASRLLHPGYAAQKDGVGFTRRRWSCAHGSFFAGVTSASRLD--YIVGKFLEIPASGSLLVA-NRAAQPHLEALGFEDGVSMLPFN 408
            W PH  + + +  ++  +  +P+  LSG  +   YP RH  ++  K    +   L HPGY  +++   +   ++     +F A  T  +R D  YIV KF EI A G+LL+A +   +  L  LGF +  + +  N
Sbjct:  135 WFPHYVNENLIKNIEFNNDPVPKIFLSGQITQHIYPARHKALIIAKNDERIYY-LSHPGYK-ERNKHDYCGSKYYSLMNNFLAAFTCCARNDRPYIVSKFFEIIACGTLLIAYDEFVKEELRMLGFVENENYISCN 268          
BLAST of mRNA_M-pyrifera_M_contig119102.3923.1 vs. uniprot
Match: A0A0L8BRX3_ENSAD (Uncharacterized protein n=7 Tax=Ensifer TaxID=106591 RepID=A0A0L8BRX3_ENSAD)

HSP 1 Score: 51.6 bits (122), Expect = 6.900e-5
Identity = 37/111 (33.33%), Postives = 60/111 (54.05%), Query Frame = 1
Query:   61 RVSRVLPQALLSGATSAAWYPKRHMVSEKYVPSLASRLL--HPGYAAQKDGVGFTR-RRWSCAHGSFFAGVTSASRLDYIVGKFLEIPASGSLLVANRAAQPHLEALGFED 384
            ++ +++P  + SG     +YP R  V+E+ V  L   L+  HPGY          R  ++S      +  ++  +R+DY+V K LEIPASG++LVA  + +P L+  GF D
Sbjct:  152 KLDKIIPVTVFSGHLFPTFYPWRAQVTEE-VQRLFPTLVYTHPGYDKNHQAPFEVRDEKYSQLISQSYFSISDTTRMDYVVRKHLEIPASGAILVAPES-EP-LKEYGFVD 259          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119102.3923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A485LQR5_9STRA6.690e-1841.55Aste57867_23886 protein n=1 Tax=Aphanomyces stella... [more]
A0A485KAP6_9STRA1.380e-1135.71Aste57867_1462 protein n=1 Tax=Aphanomyces stellat... [more]
A0A024UVA1_9STRA2.200e-1034.93Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V0SAJ9_9VIRU2.170e-729.85Glycosyltransferases group 1 n=1 Tax=Catovirus CTV... [more]
A0A6C0J7G4_9ZZZZ6.040e-528.68Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A0L8BRX3_ENSAD6.900e-533.33Uncharacterized protein n=7 Tax=Ensifer TaxID=1065... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119102contigM-pyrifera_M_contig119102:126..542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue6.4e-11
Seed eggNOG ortholog653948.CCA21172
Hectar predicted targeting categoryother localisation
EggNOG OGs28NT7@1,2QVD8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815709.8443494-CDS-M-pyrifera_M_contig119102:125..5421622815709.8443494-CDS-M-pyrifera_M_contig119102:125..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119102 126..542 +
1692277532.9822354-CDS-M-pyrifera_M_contig119102:125..5421692277532.9822354-CDS-M-pyrifera_M_contig119102:125..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119102 126..542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119102.3923.1prot_M-pyrifera_M_contig119102.3923.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119102 126..542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119102.3923.1

>prot_M-pyrifera_M_contig119102.3923.1 ID=prot_M-pyrifera_M_contig119102.3923.1|Name=mRNA_M-pyrifera_M_contig119102.3923.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
LPPVEWIPHAASSSAVLPLQRVSRVLPQALLSGATSAAWYPKRHMVSEKY
VPSLASRLLHPGYAAQKDGVGFTRRRWSCAHGSFFAGVTSASRLDYIVGK
FLEIPASGSLLVANRAAQPHLEALGFEDGVSMLPFNDTD
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mRNA from alignment at M-pyrifera_M_contig119102:126..542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119102.3923.1 ID=mRNA_M-pyrifera_M_contig119102.3923.1|Name=mRNA_M-pyrifera_M_contig119102.3923.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig119102:126..542+ (Macrocystis pyrifera P11B4 male)
CTGCCGCCGGTGGAGTGGATCCCGCACGCCGCGTCTTCGTCAGCCGTGCT GCCGCTGCAGCGCGTCTCTCGCGTGCTGCCACAGGCGCTGCTGAGCGGGG CCACCTCTGCGGCCTGGTACCCGAAGCGCCACATGGTCTCCGAGAAGTAC GTGCCATCGCTCGCGTCGCGGCTGCTCCACCCGGGGTACGCGGCGCAGAA GGACGGCGTGGGCTTCACCCGTCGCCGCTGGTCGTGCGCGCACGGCTCGT TCTTCGCTGGCGTGACCTCCGCCTCCCGCCTGGACTACATCGTGGGCAAG TTCCTGGAGATCCCGGCGTCTGGCTCGCTGCTGGTGGCCAACCGAGCGGC GCAGCCGCACCTGGAGGCTCTCGGCTTCGAGGACGGCGTGTCGATGCTGC CGTTCAACGACACGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119102:126..542+

>mRNA_M-pyrifera_M_contig119102.3923.1 ID=mRNA_M-pyrifera_M_contig119102.3923.1|Name=mRNA_M-pyrifera_M_contig119102.3923.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig119102:126..542+ (Macrocystis pyrifera P11B4 male)
CTGCCGCCGGTGGAGTGGATCCCGCACGCCGCGTCTTCGTCAGCCGTGCT
GCCGCTGCAGCGCGTCTCTCGCGTGCTGCCACAGGCGCTGCTGAGCGGGG
CCACCTCTGCGGCCTGGTACCCGAAGCGCCACATGGTCTCCGAGAAGTAC
GTGCCATCGCTCGCGTCGCGGCTGCTCCACCCGGGGTACGCGGCGCAGAA
GGACGGCGTGGGCTTCACCCGTCGCCGCTGGTCGTGCGCGCACGGCTCGT
TCTTCGCTGGCGTGACCTCCGCCTCCCGCCTGGACTACATCGTGGGCAAG
TTCCTGGAGATCCCGGCGTCTGGCTCGCTGCTGGTGGCCAACCGAGCGGC
GCAGCCGCACCTGGAGGCTCTCGGCTTCGAGGACGGCGTGTCGATGCTGC
CGTTCAACGACACGGACCTGCCGCCGGTGGAGTGGATCCCGCACGCCGCG
TCTTCGTCAGCCGTGCTGCCGCTGCAGCGCGTCTCTCGCGTGCTGCCACA
GGCGCTGCTGAGCGGGGCCACCTCTGCGGCCTGGTACCCGAAGCGCCACA
TGGTCTCCGAGAAGTACGTGCCATCGCTCGCGTCGCGGCTGCTCCACCCG
GGGTACGCGGCGCAGAAGGACGGCGTGGGCTTCACCCGTCGCCGCTGGTC
GTGCGCGCACGGCTCGTTCTTCGCTGGCGTGACCTCCGCCTCCCGCCTGG
ACTACATCGTGGGCAAGTTCCTGGAGATCCCGGCGTCTGGCTCGCTGCTG
GTGGCCAACCGAGCGGCGCAGCCGCACCTGGAGGCTCTCGGCTTCGAGGA
CGGCGTGTCGATGCTGCCGTTCAACGACACGGAC
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