mRNA_M-pyrifera_M_contig119096.3921.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119096.3921.1
Unique NamemRNA_M-pyrifera_M_contig119096.3921.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119096.3921.1 vs. uniprot
Match: A0A401FTF1_9DELT (LamGL domain-containing protein n=1 Tax=Desulfonema ishimotonii TaxID=45657 RepID=A0A401FTF1_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 5.110e-6
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:    1 CPSDPNKTEPEDCGCGVAETDSDGDGVEDCLD 96
            CPSDP+K+EP DCGCGV +TD+DG GV DCLD
Sbjct:  281 CPSDPDKSEPGDCGCGVPDTDTDGXGVSDCLD 312
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BLAST of mRNA_M-pyrifera_M_contig119096.3921.1 vs. uniprot
Match: A0A3A0CNR9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0CNR9_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.770e-5
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    1 CPSDPNKTEPEDCGCGVAETDSDGDGVEDCLD 96
            CPSDPNKT P  CGCGVA+TD++GDGV DC D
Sbjct:  649 CPSDPNKTSPGACGCGVADTDTEGDGVPDCND 680
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119096.3921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A401FTF1_9DELT5.110e-675.00LamGL domain-containing protein n=1 Tax=Desulfonem... [more]
A0A3A0CNR9_9BACT1.770e-575.00Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119096contigM-pyrifera_M_contig119096:1..540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size540
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815709.7532926-CDS-M-pyrifera_M_contig119096:0..5401622815709.7532926-CDS-M-pyrifera_M_contig119096:0..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119096 1..540 +
1692277532.954069-CDS-M-pyrifera_M_contig119096:0..5401692277532.954069-CDS-M-pyrifera_M_contig119096:0..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119096 1..540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119096.3921.1prot_M-pyrifera_M_contig119096.3921.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119096 1..540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119096.3921.1

>prot_M-pyrifera_M_contig119096.3921.1 ID=prot_M-pyrifera_M_contig119096.3921.1|Name=mRNA_M-pyrifera_M_contig119096.3921.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp
CPSDPNKTEPEDCGCGVAETDSDGDGVEDCLDNCPSDPNKTEPEDCGCGV
AETDSDGDGVEDCNDGCPSNPAKTEPGVCGCVALDVDSDGDGVLDCDDLC
PSDPNKVDPGVCGCGQSDNDTDGDGTLNCQDGCPADPNKTSPGQCGCGAD
ETDSDGDGTPDCLDDCPNDSPKTSPGICGC
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mRNA from alignment at M-pyrifera_M_contig119096:1..540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119096.3921.1 ID=mRNA_M-pyrifera_M_contig119096.3921.1|Name=mRNA_M-pyrifera_M_contig119096.3921.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig119096:1..540+ (Macrocystis pyrifera P11B4 male)
TGCCCGAGCGACCCCAACAAGACTGAGCCCGAGGACTGCGGCTGCGGCGT
TGCTGAGACCGACTCTGACGGCGACGGTGTTGAGGACTGTCTTGATAACT
GCCCCAGCGACCCCAACAAGACCGAGCCCGAGGACTGTGGCTGTGGCGTT
GCTGAGACTGACAGTGACGGTGATGGTGTGGAGGACTGTAACGACGGCTG
CCCCTCCAACCCCGCCAAGACCGAGCCTGGCGTCTGCGGCTGTGTCGCCC
TTGACGTCGACTCCGATGGCGACGGTGTGCTGGACTGCGACGACCTGTGT
CCCTCTGACCCCAACAAGGTCGACCCTGGCGTCTGTGGATGCGGTCAGTC
CGACAACGACACCGATGGCGACGGCACTCTTAACTGCCAGGACGGTTGCC
CGGCCGACCCCAACAAGACTAGCCCTGGCCAGTGCGGCTGTGGCGCCGAC
GAAACCGACTCTGACGGTGATGGTACCCCTGACTGCCTCGACGACTGCCC
CAACGATAGCCCGAAGACCTCTCCCGGCATCTGTGGCTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119096:1..540+

>mRNA_M-pyrifera_M_contig119096.3921.1 ID=mRNA_M-pyrifera_M_contig119096.3921.1|Name=mRNA_M-pyrifera_M_contig119096.3921.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig119096:1..540+ (Macrocystis pyrifera P11B4 male)
TGCCCGAGCGACCCCAACAAGACTGAGCCCGAGGACTGCGGCTGCGGCGT
TGCTGAGACCGACTCTGACGGCGACGGTGTTGAGGACTGTCTTGATAACT
GCCCCAGCGACCCCAACAAGACCGAGCCCGAGGACTGTGGCTGTGGCGTT
GCTGAGACTGACAGTGACGGTGATGGTGTGGAGGACTGTAACGACGGCTG
CCCCTCCAACCCCGCCAAGACCGAGCCTGGCGTCTGCGGCTGTGTCGCCC
TTGACGTCGACTCCGATGGCGACGGTGTGCTGGACTGCGACGACCTGTGT
CCCTCTGACCCCAACAAGGTCGACCCTGGCGTCTGTGGATGCGGTCAGTC
CGACAACGACACCGATGGCGACGGCACTCTTAACTGCCAGGACGGTTGCC
CGGCCGACCCCAACAAGACTAGCCCTGGCCAGTGCGGCTGTGGCGCCGAC
GAAACCGACTCTGACGGTGATGGTACCCCTGACTGCCTCGACGACTGCCC
CAACGATAGCCCGAAGACCTCTCCCGGCATCTGTGGCTGCTGCCCGAGCG
ACCCCAACAAGACTGAGCCCGAGGACTGCGGCTGCGGCGTTGCTGAGACC
GACTCTGACGGCGACGGTGTTGAGGACTGTCTTGATAACTGCCCCAGCGA
CCCCAACAAGACCGAGCCCGAGGACTGTGGCTGTGGCGTTGCTGAGACTG
ACAGTGACGGTGATGGTGTGGAGGACTGTAACGACGGCTGCCCCTCCAAC
CCCGCCAAGACCGAGCCTGGCGTCTGCGGCTGTGTCGCCCTTGACGTCGA
CTCCGATGGCGACGGTGTGCTGGACTGCGACGACCTGTGTCCCTCTGACC
CCAACAAGGTCGACCCTGGCGTCTGTGGATGCGGTCAGTCCGACAACGAC
ACCGATGGCGACGGCACTCTTAACTGCCAGGACGGTTGCCCGGCCGACCC
CAACAAGACTAGCCCTGGCCAGTGCGGCTGTGGCGCCGACGAAACCGACT
CTGACGGTGATGGTACCCCTGACTGCCTCGACGACTGCCCCAACGATAGC
CCGAAGACCTCTCCCGGCATCTGTGGCTGC
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