mRNA_M-pyrifera_M_contig11900.3907.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11900.3907.1
Unique NamemRNA_M-pyrifera_M_contig11900.3907.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11900.3907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11900contigM-pyrifera_M_contig11900:2..597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size596
Cds size378
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815709.0913649-UTR-M-pyrifera_M_contig11900:1..2191622815709.0913649-UTR-M-pyrifera_M_contig11900:1..219Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11900 2..219 +
1692277532.6093035-UTR-M-pyrifera_M_contig11900:1..2191692277532.6093035-UTR-M-pyrifera_M_contig11900:1..219Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11900 2..219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815709.1024573-CDS-M-pyrifera_M_contig11900:219..5971622815709.1024573-CDS-M-pyrifera_M_contig11900:219..597Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11900 220..597 +
1692277532.6259596-CDS-M-pyrifera_M_contig11900:219..5971692277532.6259596-CDS-M-pyrifera_M_contig11900:219..597Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11900 220..597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11900.3907.1prot_M-pyrifera_M_contig11900.3907.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11900 220..597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11900.3907.1

>prot_M-pyrifera_M_contig11900.3907.1 ID=prot_M-pyrifera_M_contig11900.3907.1|Name=mRNA_M-pyrifera_M_contig11900.3907.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
MQVSTIIYSCMLCNRAATLHSLPPVSAQINRPQEPNFSFLSSTPSQHTTT
TTTTTTTLRLLVGTSANVKTLSSCCNYNVPNRRHNIGEKKRRELTFASKL
SEPISPLPSHCVAPTTTTTFALPIRP
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mRNA from alignment at M-pyrifera_M_contig11900:2..597+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11900.3907.1 ID=mRNA_M-pyrifera_M_contig11900.3907.1|Name=mRNA_M-pyrifera_M_contig11900.3907.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=596bp|location=Sequence derived from alignment at M-pyrifera_M_contig11900:2..597+ (Macrocystis pyrifera P11B4 male)
GAAATTGATCTTGATAGGCTCGCGGACCACCTACCAAGCCACCGGGGACG
CCGGCTGGGTAATACCGACGATACCCGGGCTAATACCCGGGCAAATATCA
GGTCATACCTGGGAGTATTCGTACACCCTACTCAAACTCTCTTGTGCCCC
CCTCTACGGCCGTAAGAAACCAAGAAAACGACTGTCCCCACGAAATTTAT
CTACTGTAATGGACAGTTATGCAGGTATCCACTATTATTTATTCGTGTAT
GTTATGCAACAGAGCAGCAACCCTACATAGCCTTCCTCCCGTCTCCGCGC
AAATCAATCGACCACAAGAACCGAACTTCTCTTTTCTCTCTTCCACCCCA
TCTCAGCACACAACCACCACCACCACCACAACCACCACGCTTCGCTTGCT
GGTCGGAACAAGCGCAAACGTCAAAACCCTCTCTTCTTGCTGCAATTATA
ACGTACCGAACCGACGTCATAATATAGGAGAAAAAAAAAGGAGAGAACTT
ACTTTCGCGAGCAAGCTATCCGAGCCCATAAGCCCTCTCCCTTCACATTG
TGTTGCACCAACCACCACCACCACTTTTGCTCTACCGATACGCCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11900:2..597+

>mRNA_M-pyrifera_M_contig11900.3907.1 ID=mRNA_M-pyrifera_M_contig11900.3907.1|Name=mRNA_M-pyrifera_M_contig11900.3907.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig11900:2..597+ (Macrocystis pyrifera P11B4 male)
ATGCAGGTATCCACTATTATTTATTCGTGTATGTTATGCAACAGAGCAGC
AACCCTACATAGCCTTCCTCCCGTCTCCGCGCAAATCAATCGACCACAAG
AACCGAACTTCTCTTTTCTCTCTTCCACCCCATCTCAGCACACAACCACC
ACCACCACCACAACCACCACGCTTCGCTTGCTGGTCGGAACAAGCGCAAA
CGTCAAAACCCTCTCTTCTTGCTGCAATTATAACGTACCGAACCGACGTC
ATAATATAGGAGAAAAAAAAAGGAGAGAACTTACTTTCGCGAGCAAGCTA
TCCGAGCCCATAAGCCCTCTCCCTTCACATTGTGTTGCACCAACCACCAC
CACCACTTTTGCTCTACCGATACGCCCCATGCAGGTATCCACTATTATTT
ATTCGTGTATGTTATGCAACAGAGCAGCAACCCTACATAGCCTTCCTCCC
GTCTCCGCGCAAATCAATCGACCACAAGAACCGAACTTCTCTTTTCTCTC
TTCCACCCCATCTCAGCACACAACCACCACCACCACCACAACCACCACGC
TTCGCTTGCTGGTCGGAACAAGCGCAAACGTCAAAACCCTCTCTTCTTGC
TGCAATTATAACGTACCGAACCGACGTCATAATATAGGAGAAAAAAAAAG
GAGAGAACTTACTTTCGCGAGCAAGCTATCCGAGCCCATAAGCCCTCTCC
CTTCACATTGTGTTGCACCAACCACCACCACCACTTTTGCTCTACCGATA
CGCCCC
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