mRNA_M-pyrifera_M_contig119.3906.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119.3906.1
Unique NamemRNA_M-pyrifera_M_contig119.3906.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119.3906.1 vs. uniprot
Match: D7G5P4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P4_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 3.110e-25
Identity = 56/76 (73.68%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    1 SNPEQMAAAQREAVENGTGYKPRSGKQNAQIGLKGFTQATQNPAMFTDAMSMLGDPGAVKEAEAMMNDPEFKSEIS 228
            SNPEQMA AQREAVE  +G+KPRSGKQNAQIGLKGFTQATQNPAMF DAMSMLGDP             EFKSEI+
Sbjct:   37 SNPEQMAEAQREAVE-ASGFKPRSGKQNAQIGLKGFTQATQNPAMFKDAMSMLGDPSXXXXXXXXXXXXEFKSEIN 111
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BLAST of mRNA_M-pyrifera_M_contig119.3906.1 vs. uniprot
Match: A0A835YIF9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIF9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.940e-9
Identity = 26/40 (65.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   61 KPRSGKQNAQIGLKGFTQATQNPAMFTDAMSMLGDPGAVK 180
            K ++G +NA+IG++GF+QAT+NPAMF +AMSML DP AVK
Sbjct:   51 KKKTGAENARIGMEGFSQATKNPAMFAEAMSMLSDPNAVK 90
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119.3906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5P4_ECTSI3.110e-2573.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YIF9_9STRA4.940e-965.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119contigM-pyrifera_M_contig119:44645..45958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_008620.1
Exons2
Model size229
Cds size213
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119.3906.1prot_M-pyrifera_M_contig119.3906.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119 44660..45958 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815709.0340004-UTR-M-pyrifera_M_contig119:44644..446591622815709.0340004-UTR-M-pyrifera_M_contig119:44644..44659Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119 44645..44659 +
1692277532.5681815-UTR-M-pyrifera_M_contig119:44644..446591692277532.5681815-UTR-M-pyrifera_M_contig119:44644..44659Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119 44645..44659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815709.0459604-CDS-M-pyrifera_M_contig119:44659..447581622815709.0459604-CDS-M-pyrifera_M_contig119:44659..44758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119 44660..44758 +
1692277532.5811546-CDS-M-pyrifera_M_contig119:44659..447581692277532.5811546-CDS-M-pyrifera_M_contig119:44659..44758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119 44660..44758 +
1622815709.0566273-CDS-M-pyrifera_M_contig119:45844..459581622815709.0566273-CDS-M-pyrifera_M_contig119:45844..45958Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119 45845..45958 +
1692277532.5964139-CDS-M-pyrifera_M_contig119:45844..459581692277532.5964139-CDS-M-pyrifera_M_contig119:45844..45958Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119 45845..45958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119.3906.1

>prot_M-pyrifera_M_contig119.3906.1 ID=prot_M-pyrifera_M_contig119.3906.1|Name=mRNA_M-pyrifera_M_contig119.3906.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
MAAAQREAVENGTGYKPRSGKQNAQIGLKGFTQATQNPAMFTDAMSMLGD
PGAVKEAEAMMNDPEFKSEIS
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mRNA from alignment at M-pyrifera_M_contig119:44645..45958+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119.3906.1 ID=mRNA_M-pyrifera_M_contig119.3906.1|Name=mRNA_M-pyrifera_M_contig119.3906.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1314bp|location=Sequence derived from alignment at M-pyrifera_M_contig119:44645..45958+ (Macrocystis pyrifera P11B4 male)
AGTAACCCGGAGCAAATGGCAGCGGCGCAGCGAGAGGCTGTAGAAAACGG
GACTGGGTACAAGCCGCGGTCAGGGAAGCAAAACGCTCAGATTGGGCTCA
AGGGTTTCACTCAGGTGAGAGGCGTTATTTCAGGTGCTGCTCGTTTGTCG
TTTTGTGCTGCCGCGTGCTTACCTCTGTTCGTACTCCAGCCAAGTTTTTC
GGGGGGGACTTTGTCGGAATTTTTGTGGCATACATTATGCAGTACCCACT
GAAGGAGTTATGGTAAACACCAATCGATAAATAACTTCTGGTAAAAAACG
ACAAGACGTGGTTGTAGTGTTGCACTTGACCAGGGGTTAAGGTGAGGAAG
CTTTTTTTCCTCGCGGAGGGTGGTCTGATTTTTGTGATATCATACGAAGC
CAGCGCGACGCGCGGGGAGAAGCGAAGTAGGCAAGGCTACGAACGGCCTG
GTTTCTGAAATGGCAGAGGTAGGGTTCTCCTTGCGCTGTAGTAGCGGTAT
GAGTAGCGGCTCGTTGTCGAGGCGACCCTTGCCTCTGATTGCGAGGGTGG
GGTGTGTTTCGTTTTGTTTGCATCCGCGACAGGAAACAACGCAGCAACCC
CCCGCCACGAGCAGAAAACAGCCGCGTCACCGAGCGGGCGTTCGTTTGTG
GCGGCAGTGGTGGTGGTGGTGGTGGTGGTGATGGTGGTCACTCCCTCCGC
CGATGATCGCTTGCTTAACTCCTTTTTAAGGAGGCGTTTAGGACTGCGCT
CTCGTTGGGGGGACGTTTTACGTGGCAATAGAGTAGTTTAAGTTTATTAG
AATATGGCGCTTTATTAATACTATCATTAACAGGGTTGTAGCTGTTGCTC
CTGCAAGTTTTTCTCAGAGCTGTTCAGGGGTTAGGAGGTTTTAAAAAAAT
CATGGGTCGGGTCGGGAGGTATTCGAAATCTCACGGGTCGGGTAGAGTAG
GATCAGATAGGATTAGATGACCACATCCGGCCCGACCGACGTGCATATCC
CGACCCGTGAGCAGCCCTGTTTTTTCCCTACCTTTTTTGCACACTATTTG
CAAGTGGTCTGTCCCCCGAAAATTGGTGCATTTTCTAAAATGGGTCGATG
TTAACCGGTTTGTTCACTTCCCTCGACCGACCTCTTTTGTGGGACTGACG
TAACTCCGTCTTGTACGATGTTTTATCATGTTTTATAATAATGACTACAG
GCAACCCAAAACCCGGCGATGTTCACGGACGCCATGAGCATGCTCGGAGA
CCCCGGGGCGGTGAAGGAGGCGGAGGCGATGATGAATGACCCAGAGTTCA
AATCGGAAATCTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119:44645..45958+

>mRNA_M-pyrifera_M_contig119.3906.1 ID=mRNA_M-pyrifera_M_contig119.3906.1|Name=mRNA_M-pyrifera_M_contig119.3906.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig119:44645..45958+ (Macrocystis pyrifera P11B4 male)
ATGGCAGCGGCGCAGCGAGAGGCTGTAGAAAACGGGACTGGGTACAAGCC
GCGGTCAGGGAAGCAAAACGCTCAGATTGGGCTCAAGGGTTTCACTCAGA
TGGCAGCGGCGCAGCGAGAGGCTGTAGAAAACGGGACTGGGTACAAGCCG
CGGTCAGGGAAGCAAAACGCTCAGATTGGGCTCAAGGGTTTCACTCAGGC
AACCCAAAACCCGGCGATGTTCACGGACGCCATGAGCATGCTCGGAGACC
CCGGGGCGGTGAAGGAGGCGGAGGCGATGATGAATGACCCAGAGTTCAAA
TCGGAAATCTCTGCAACCCAAAACCCGGCGATGTTCACGGACGCCATGAG
CATGCTCGGAGACCCCGGGGCGGTGAAGGAGGCGGAGGCGATGATGAATG
ACCCAGAGTTCAAATCGGAAATCTCT
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