mRNA_M-pyrifera_M_contig118989.3902.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118989.3902.1
Unique NamemRNA_M-pyrifera_M_contig118989.3902.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118989.3902.1 vs. uniprot
Match: A0A2E7K8Q5_9PLAN (Peptidase_M56 domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K8Q5_9PLAN)

HSP 1 Score: 319 bits (818), Expect = 4.830e-100
Identity = 179/181 (98.90%), Postives = 180/181 (99.45%), Query Frame = 1 
Query:    1 VRGRVINEATGAGVPDAPVAWNLQQSQFIPETPHLHPLHVVTTDADGYFLVHCPSGEFAFQTRGRMRGFQFNSSQPQPAKRVSVSQKGPDSQPVIELQXXXXXXXXXXXXXXXXVPGADIRTAATSTRSVQLMDGSVIQSFIPIHGVSDARGEYRLDQLFMTDSSDQEKQSHEVVIRNADD 543
            VRGRVINEATGAGVPDAPVAWNLQQSQFIPETPHLHP HVVTTDADGYFLVHCPSGEFAFQTRGRMRGFQFNSSQPQPAKRVSVSQKGPDSQPVIELQXXXXXXXXXXXXXXXXVPGADIRTAATSTRSVQLMDGSVIQSFIPIHGVSDARGEYRLDQLFMTDSSDQEKQSH+VVIRNADD
Sbjct:  717 VRGRVINEATGAGVPDAPVAWNLQQSQFIPETPHLHPPHVVTTDADGYFLVHCPSGEFAFQTRGRMRGFQFNSSQPQPAKRVSVSQKGPDSQPVIELQXXXXXXXXXXXXXXXXVPGADIRTAATSTRSVQLMDGSVIQSFIPIHGVSDARGEYRLDQLFMTDSSDQEKQSHKVVIRNADD 897
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BLAST of mRNA_M-pyrifera_M_contig118989.3902.1 vs. uniprot
Match: A0A2D6ST97_9PLAN (Peptidase_M56 domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6ST97_9PLAN)

HSP 1 Score: 110 bits (276), Expect = 6.270e-25
Identity = 66/180 (36.67%), Postives = 95/180 (52.78%), Query Frame = 1 
Query:    1 VRGRVINEATGAGVPDAPVAWNLQQSQFIPETPHLHPLHVVTTDADGYFLVHCPSGEFAFQTRGRMRGFQFNSSQPQPAKRVSVSQKGPDSQPVIELQXXXXXXXXXXXXXXXXVPGADIRTAATSTRSVQLMDGSVIQSFIPIHGVSDARGEYRLDQLFMTDSSDQEKQSHEVVIRNAD 540
            VRGR++++ + AG+ D  V     Q +F    P  +    V TD +G+F V+CP G+  FQ RGR+RGF  +      ++ VSV+++GP  +P I L                 V GA +R  A +T          + S+ PI G +D +GEY LDQLFMT S+ QE  + EVVIR+ D
Sbjct:  722 VRGRLVSQESAAGISDVEVLARGPQFEFEANVPRQYAASPVLTDTEGFFDVYCPPGDHTFQPRGRIRGFLNSREAGAVSRIVSVTEQGPQHEPEISLAPAPRFRLIVTTPDGEPVQGASVRAKAHNT----------LNSYFPIGGTTDEKGEYLLDQLFMTKSAIQELLAEEVVIRDQD 891
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118989.3902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E7K8Q5_9PLAN4.830e-10098.90Peptidase_M56 domain-containing protein n=2 Tax=Gi... [more]
A0A2D6ST97_9PLAN6.270e-2536.67Peptidase_M56 domain-containing protein (Fragment)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118989contigM-pyrifera_M_contig118989:3..545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size543
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.7070951-CDS-M-pyrifera_M_contig118989:2..5451622815708.7070951-CDS-M-pyrifera_M_contig118989:2..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118989 3..545 -
1692277532.3311563-CDS-M-pyrifera_M_contig118989:2..5451692277532.3311563-CDS-M-pyrifera_M_contig118989:2..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118989 3..545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118989.3902.1prot_M-pyrifera_M_contig118989.3902.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118989 3..545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118989.3902.1

>prot_M-pyrifera_M_contig118989.3902.1 ID=prot_M-pyrifera_M_contig118989.3902.1|Name=mRNA_M-pyrifera_M_contig118989.3902.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=181bp
VRGRVINEATGAGVPDAPVAWNLQQSQFIPETPHLHPLHVVTTDADGYFL
VHCPSGEFAFQTRGRMRGFQFNSSQPQPAKRVSVSQKGPDSQPVIELQPA
PRIQLIIKDPQGQPVPGADIRTAATSTRSVQLMDGSVIQSFIPIHGVSDA
RGEYRLDQLFMTDSSDQEKQSHEVVIRNADD
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mRNA from alignment at M-pyrifera_M_contig118989:3..545-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118989.3902.1 ID=mRNA_M-pyrifera_M_contig118989.3902.1|Name=mRNA_M-pyrifera_M_contig118989.3902.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=543bp|location=Sequence derived from alignment at M-pyrifera_M_contig118989:3..545- (Macrocystis pyrifera P11B4 male)
GTCCGCGGTCGCGTGATCAACGAGGCAACAGGAGCCGGCGTGCCAGATGC
CCCGGTTGCCTGGAACCTGCAGCAATCGCAGTTCATTCCTGAGACTCCGC
ACCTGCATCCACTTCACGTTGTGACGACTGATGCCGACGGCTATTTTCTG
GTTCACTGTCCGTCGGGAGAATTTGCCTTCCAGACGAGGGGGCGCATGCG
GGGTTTTCAATTCAACTCCTCGCAGCCACAGCCCGCAAAACGAGTCAGCG
TCTCACAAAAAGGGCCTGACAGCCAACCTGTCATCGAACTGCAGCCGGCA
CCCCGCATTCAACTTATCATCAAAGATCCCCAGGGCCAACCGGTCCCTGG
GGCCGACATTCGCACTGCGGCAACCAGTACACGATCGGTTCAGTTGATGG
ATGGGAGCGTCATTCAAAGTTTTATACCCATTCATGGTGTCTCCGATGCA
CGGGGAGAGTATCGGCTCGATCAGCTCTTCATGACGGATTCCTCCGATCA
GGAAAAACAGTCGCACGAAGTTGTCATCCGCAATGCCGACGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118989:3..545-

>mRNA_M-pyrifera_M_contig118989.3902.1 ID=mRNA_M-pyrifera_M_contig118989.3902.1|Name=mRNA_M-pyrifera_M_contig118989.3902.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1086bp|location=Sequence derived from alignment at M-pyrifera_M_contig118989:3..545- (Macrocystis pyrifera P11B4 male)
GTCCGCGGTCGCGTGATCAACGAGGCAACAGGAGCCGGCGTGCCAGATGC
CCCGGTTGCCTGGAACCTGCAGCAATCGCAGTTCATTCCTGAGACTCCGC
ACCTGCATCCACTTCACGTTGTGACGACTGATGCCGACGGCTATTTTCTG
GTTCACTGTCCGTCGGGAGAATTTGCCTTCCAGACGAGGGGGCGCATGCG
GGGTTTTCAATTCAACTCCTCGCAGCCACAGCCCGCAAAACGAGTCAGCG
TCTCACAAAAAGGGCCTGACAGCCAACCTGTCATCGAACTGCAGCCGGCA
CCCCGCATTCAACTTATCATCAAAGATCCCCAGGGCCAACCGGTCCCTGG
GGCCGACATTCGCACTGCGGCAACCAGTACACGATCGGTTCAGTTGATGG
ATGGGAGCGTCATTCAAAGTTTTATACCCATTCATGGTGTCTCCGATGCA
CGGGGAGAGTATCGGCTCGATCAGCTCTTCATGACGGATTCCTCCGATCA
GGAAAAACAGTCGCACGAAGTTGTCATCCGCAATGCCGACGATGTCCGCG
GTCGCGTGATCAACGAGGCAACAGGAGCCGGCGTGCCAGATGCCCCGGTT
GCCTGGAACCTGCAGCAATCGCAGTTCATTCCTGAGACTCCGCACCTGCA
TCCACTTCACGTTGTGACGACTGATGCCGACGGCTATTTTCTGGTTCACT
GTCCGTCGGGAGAATTTGCCTTCCAGACGAGGGGGCGCATGCGGGGTTTT
CAATTCAACTCCTCGCAGCCACAGCCCGCAAAACGAGTCAGCGTCTCACA
AAAAGGGCCTGACAGCCAACCTGTCATCGAACTGCAGCCGGCACCCCGCA
TTCAACTTATCATCAAAGATCCCCAGGGCCAACCGGTCCCTGGGGCCGAC
ATTCGCACTGCGGCAACCAGTACACGATCGGTTCAGTTGATGGATGGGAG
CGTCATTCAAAGTTTTATACCCATTCATGGTGTCTCCGATGCACGGGGAG
AGTATCGGCTCGATCAGCTCTTCATGACGGATTCCTCCGATCAGGAAAAA
CAGTCGCACGAAGTTGTCATCCGCAATGCCGACGAT
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