mRNA_M-pyrifera_M_contig118949.3897.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118949.3897.1
Unique NamemRNA_M-pyrifera_M_contig118949.3897.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118949.3897.1 vs. uniprot
Match: UPI00106C4C69 (coiled-coil domain-containing protein 18-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C4C69)

HSP 1 Score: 95.9 bits (237), Expect = 1.160e-20
Identity = 49/116 (42.24%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    1 SVCFTAPELNQAWEVDFGAAIAFRPTAYALRDGEDALDGMLRNWVLEGTNDFRLWSSIDEHKNDLTLTNPQRSAVFHITPKTFFRSYRAFRIRQTGPNSRGAHYLNLAGLELYGTL 348
            S C T+ + NQ W++DFG   +  P+AY L+ G   + G LRNWVLEG+ D ++W  +  H ND TL     +A + I   +   +YR  R+RQTG N  G   L L+GLE+YG L
Sbjct: 2012 SWCSTSNKTNQWWKIDFGEKRSVLPSAYTLQHGWSGVSGALRNWVLEGSRDGKVWHILANHVNDDTLDKGYAAATWKIDDVS--TAYRFLRVRQTGKNEAGKDSLRLSGLEVYGQL 2125          
BLAST of mRNA_M-pyrifera_M_contig118949.3897.1 vs. uniprot
Match: A0A6S7GB43_PARCT (E3 ubiquitin-protein ligase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GB43_PARCT)

HSP 1 Score: 92.4 bits (228), Expect = 1.870e-19
Identity = 47/116 (40.52%), Postives = 65/116 (56.03%), Query Frame = 1
Query:    1 SVCFTAPELNQAWEVDFGAAIAFRPTAYALRDGEDALDGMLRNWVLEGTNDFRLWSSIDEHKNDLTLTNPQRSAVFHITPKTFFRSYRAFRIRQTGPNSRGAHYLNLAGLELYGTL 348
            S C T+ + NQ W++DFG   +  P+AY L+ G   + G +RNWVLEG+ D ++W  +  H ND TL     +A + I        YR  R+RQTG N  G   L L+G E+YG L
Sbjct: 1294 SWCSTSNKANQWWKIDFGDKRSILPSAYTLQHGWSGVSGAVRNWVLEGSRDGKVWHILRNHVNDETLDKGYAAATWKIDDVN--TPYRYLRVRQTGKNEAGKDSLRLSGFEVYGQL 1407          
BLAST of mRNA_M-pyrifera_M_contig118949.3897.1 vs. uniprot
Match: B3MPQ1_DROAN (E3 ubiquitin-protein ligase n=1 Tax=Drosophila ananassae TaxID=7217 RepID=B3MPQ1_DROAN)

HSP 1 Score: 78.2 bits (191), Expect = 1.880e-14
Identity = 42/116 (36.21%), Postives = 66/116 (56.90%), Query Frame = 1
Query:    7 CFTAPELNQAWEVDFGAAIAFRPTAYALRDGEDALDGMLRNWVLEGTNDFRLWSSIDEHKNDLTLTNPQRSAVFHIT-PKTFFRSYRAFRIRQTGPNSRG-AHYLNLAGLELYGTL 348
            C T       + +D G  I   PTAY+LR         LRNW+L+G+ D  +W+++  H +D +L +P  +A + I+ P+   + YR  RI+Q G N+ G  HYL+L+G E+YG +
Sbjct: 1170 CHTKDNKKAWFAIDLGVYII--PTAYSLRHARGYARSALRNWLLQGSKDGIVWTTLSTHVDDKSLVDPGSTATWPISCPQDDSQRYRHIRIQQNGRNASGQTHYLSLSGFEIYGRI 1283          
BLAST of mRNA_M-pyrifera_M_contig118949.3897.1 vs. uniprot
Match: A0A8J2LSW2_9BILA (E3 ubiquitin-protein ligase n=4 Tax=Cercopithifilaria johnstoni TaxID=2874296 RepID=A0A8J2LSW2_9BILA)

HSP 1 Score: 77.4 bits (189), Expect = 3.510e-14
Identity = 42/113 (37.17%), Postives = 60/113 (53.10%), Query Frame = 1
Query:    7 CFTAPELNQAWEVDFGAAIAFRPTAYALRDGEDALDGMLRNWVLEGTNDFRLWSSIDEHKNDLTLTNPQRSAVFHITPKTFFRSYRAFRIRQTGPN-SRGAHYLNLAGLELYG 342
            C T+ + N  + +D G  + F P  Y LR         LRNW+L+G+N+ R+W  +  H+ND +L  P  +A + I        YR  RI Q G N S   HYL+L+G E+YG
Sbjct: 1277 CHTSDDKNAHFTIDLG--VYFYPNTYTLRHARGYGRSALRNWLLQGSNNGRIWDVLVVHENDTSLNYPGSTATWPIVCSEGKDPYRYIRIAQNGKNASNQNHYLSLSGFEIYG 1387          
BLAST of mRNA_M-pyrifera_M_contig118949.3897.1 vs. uniprot
Match: A0A6P4KLY3_DROBP (E3 ubiquitin-protein ligase n=2 Tax=Drosophila bipectinata TaxID=42026 RepID=A0A6P4KLY3_DROBP)

HSP 1 Score: 76.3 bits (186), Expect = 8.900e-14
Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 1
Query:    7 CFTAPELNQAWEVDFGAAIAFRPTAYALRDGEDALDGMLRNWVLEGTNDFRLWSSIDEHKNDLTLTNPQRSAVFHIT-PKTFFRSYRAFRIRQTGPNSRG-AHYLNLAGLELYGTL 348
            C T       + +D G  I   PTAY LR         LRNW+L+G+ D  +W+++  H +D +L  P  +A + I+ P+     YR  RI+Q G N+ G  HYL+L+G E+YG +
Sbjct: 1170 CHTKDNKKAWFAIDLGVYII--PTAYTLRHARGYARSALRNWLLQGSKDGIVWTTLSTHVDDKSLVEPGSTATWPISCPQDDSLRYRHIRIQQNGRNASGQTHYLSLSGFEIYGRI 1283          
BLAST of mRNA_M-pyrifera_M_contig118949.3897.1 vs. uniprot
Match: A0A498S5B9_ACAVI (E3 ubiquitin-protein ligase n=1 Tax=Acanthocheilonema viteae TaxID=6277 RepID=A0A498S5B9_ACAVI)

HSP 1 Score: 75.5 bits (184), Expect = 1.660e-13
Identity = 41/113 (36.28%), Postives = 60/113 (53.10%), Query Frame = 1
Query:    7 CFTAPELNQAWEVDFGAAIAFRPTAYALRDGEDALDGMLRNWVLEGTNDFRLWSSIDEHKNDLTLTNPQRSAVFHITPKTFFRSYRAFRIRQTGPN-SRGAHYLNLAGLELYG 342
            C T+ + N  + +D G  + F P  Y LR         LRNW+L+G+++ R+W  +  H+ND +L  P  +A + I        YR  RI Q G N S   HYL+L+G E+YG
Sbjct: 1265 CHTSDDKNAHFTIDLG--VYFYPNTYTLRHARGYGRSALRNWLLQGSHNGRIWDVLVVHENDASLNYPGSTATWPIVCSEGKGPYRYIRIAQNGKNASNQNHYLSLSGFEIYG 1375          
BLAST of mRNA_M-pyrifera_M_contig118949.3897.1 vs. uniprot
Match: A0A1I7VDU6_LOALO (E3 ubiquitin-protein ligase n=3 Tax=Loa loa TaxID=7209 RepID=A0A1I7VDU6_LOALO)

HSP 1 Score: 75.1 bits (183), Expect = 2.260e-13
Identity = 42/113 (37.17%), Postives = 60/113 (53.10%), Query Frame = 1
Query:    7 CFTAPELNQAWEVDFGAAIAFRPTAYALRDGEDALDGMLRNWVLEGTNDFRLWSSIDEHKNDLTLTNPQRSAVFHITPKTFFRSYRAFRIRQTGPN-SRGAHYLNLAGLELYG 342
            C T+ + N  + +D G  I F P  Y LR         LRNW+L+G+++ R+W  +  H+ND +L  P  +A + I        YR  RI Q G N S   HYL+L+G E+YG
Sbjct: 1260 CHTSDDKNAHFTIDLG--IYFYPNTYTLRHARGYGRSALRNWLLQGSHNGRIWDILVVHENDASLNYPGSTATWPIVCLEGKGPYRYIRIAQNGKNASNQNHYLSLSGFEIYG 1370          
BLAST of mRNA_M-pyrifera_M_contig118949.3897.1 vs. uniprot
Match: J9EAW2_WUCBA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Wuchereria bancrofti TaxID=6293 RepID=J9EAW2_WUCBA)

HSP 1 Score: 74.3 bits (181), Expect = 3.840e-13
Identity = 42/113 (37.17%), Postives = 60/113 (53.10%), Query Frame = 1
Query:    7 CFTAPELNQAWEVDFGAAIAFRPTAYALRDGEDALDGMLRNWVLEGTNDFRLWSSIDEHKNDLTLTNPQRSAVFHITPKTFFRSYRAFRIRQTGPN-SRGAHYLNLAGLELYG 342
            C T+ + N  + +D G  I F P  Y LR         LRNW+L+G+++ R+W  +  H+ND +L  P  +A + I        YR  RI Q G N S   HYL+L+G E+YG
Sbjct:   50 CHTSDDKNAHFTIDLG--IYFYPKTYTLRHARGYGRSALRNWLLQGSHNGRIWDVLVVHENDSSLNYPGSTATWPIVCPEEKGPYRYIRIAQNGRNASNQNHYLSLSGFEIYG 160          
BLAST of mRNA_M-pyrifera_M_contig118949.3897.1 vs. uniprot
Match: A0A3P7EIZ1_WUCBA (E3 ubiquitin-protein ligase n=1 Tax=Wuchereria bancrofti TaxID=6293 RepID=A0A3P7EIZ1_WUCBA)

HSP 1 Score: 74.3 bits (181), Expect = 3.950e-13
Identity = 42/113 (37.17%), Postives = 60/113 (53.10%), Query Frame = 1
Query:    7 CFTAPELNQAWEVDFGAAIAFRPTAYALRDGEDALDGMLRNWVLEGTNDFRLWSSIDEHKNDLTLTNPQRSAVFHITPKTFFRSYRAFRIRQTGPN-SRGAHYLNLAGLELYG 342
            C T+ + N  + +D G  I F P  Y LR         LRNW+L+G+++ R+W  +  H+ND +L  P  +A + I        YR  RI Q G N S   HYL+L+G E+YG
Sbjct:  602 CHTSDDKNAHFTIDLG--IYFYPKTYTLRHARGYGRSALRNWLLQGSHNGRIWDVLVVHENDSSLNYPGSTATWPIVCPEEKGPYRYIRIAQNGRNASNQNHYLSLSGFEIYG 712          
BLAST of mRNA_M-pyrifera_M_contig118949.3897.1 vs. uniprot
Match: A0A5A8CJ38_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CJ38_CAFRO)

HSP 1 Score: 74.3 bits (181), Expect = 3.990e-13
Identity = 42/118 (35.59%), Postives = 61/118 (51.69%), Query Frame = 1
Query:    7 CFTAPELNQAWEVDFGAAIAFRPTAYALRDGEDALDGMLRNWVLEGTNDFRL---WSSIDEHKNDLTLTNPQRS-AVFHITPKTFFRSYRAFRIRQTGPNSRGAHYLNLAGLELYGTL 348
            C+TA E    W +    A   R   Y +RDGED +   L +W L+  +       W ++  H ++ T     R  A F I P     + ++FR+ QTGPNSRGA+ L +AG+EL+G L
Sbjct:  466 CYTADEPQSWWSLSLPPAAVLRVRGYEIRDGEDQVRQHLTSWELQARDAVGQDGQWRALASHPDEPTALVVDRGLARFSIPPSNATPALQSFRVLQTGPNSRGANDLGIAGIELFGEL 583          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118949.3897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
UPI00106C4C691.160e-2042.24coiled-coil domain-containing protein 18-like n=1 ... [more]
A0A6S7GB43_PARCT1.870e-1940.52E3 ubiquitin-protein ligase n=1 Tax=Paramuricea cl... [more]
B3MPQ1_DROAN1.880e-1436.21E3 ubiquitin-protein ligase n=1 Tax=Drosophila ana... [more]
A0A8J2LSW2_9BILA3.510e-1437.17E3 ubiquitin-protein ligase n=4 Tax=Cercopithifila... [more]
A0A6P4KLY3_DROBP8.900e-1436.21E3 ubiquitin-protein ligase n=2 Tax=Drosophila bip... [more]
A0A498S5B9_ACAVI1.660e-1336.28E3 ubiquitin-protein ligase n=1 Tax=Acanthocheilon... [more]
A0A1I7VDU6_LOALO2.260e-1337.17E3 ubiquitin-protein ligase n=3 Tax=Loa loa TaxID=... [more]
J9EAW2_WUCBA3.840e-1337.17E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Wuc... [more]
A0A3P7EIZ1_WUCBA3.950e-1337.17E3 ubiquitin-protein ligase n=1 Tax=Wuchereria ban... [more]
A0A5A8CJ38_CAFRO3.990e-1335.59Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118949contigM-pyrifera_M_contig118949:9..356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue6.1e-15
Seed eggNOG ortholog55529.EKX55149
KEGG rclassRC00017
KEGG koko:K05288
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030162,GO:0030163,GO:0031461,GO:0031625,GO:0032991,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050789,GO:0051171,GO:0051246,GO:0051603,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.protein ubiquitination
EggNOG OGsCOG5021@1,KOG4276@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.487374-CDS-M-pyrifera_M_contig118949:8..3561622815708.487374-CDS-M-pyrifera_M_contig118949:8..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118949 9..356 +
1692277532.248065-CDS-M-pyrifera_M_contig118949:8..3561692277532.248065-CDS-M-pyrifera_M_contig118949:8..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118949 9..356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118949.3897.1prot_M-pyrifera_M_contig118949.3897.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118949 9..356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118949.3897.1

>prot_M-pyrifera_M_contig118949.3897.1 ID=prot_M-pyrifera_M_contig118949.3897.1|Name=mRNA_M-pyrifera_M_contig118949.3897.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
SVCFTAPELNQAWEVDFGAAIAFRPTAYALRDGEDALDGMLRNWVLEGTN
DFRLWSSIDEHKNDLTLTNPQRSAVFHITPKTFFRSYRAFRIRQTGPNSR
GAHYLNLAGLELYGTL
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mRNA from alignment at M-pyrifera_M_contig118949:9..356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118949.3897.1 ID=mRNA_M-pyrifera_M_contig118949.3897.1|Name=mRNA_M-pyrifera_M_contig118949.3897.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig118949:9..356+ (Macrocystis pyrifera P11B4 male)
AGTGTTTGCTTCACTGCGCCTGAACTCAACCAAGCGTGGGAGGTAGACTT TGGTGCAGCTATTGCGTTTCGACCAACTGCGTATGCATTGCGTGATGGTG AGGATGCGTTGGATGGAATGCTGCGAAACTGGGTGTTGGAAGGTACAAAT GACTTTCGTCTGTGGAGTTCAATTGATGAGCACAAGAATGACCTTACTCT AACCAACCCACAGCGAAGTGCCGTGTTTCATATCACTCCGAAGACGTTCT TCAGGTCCTATCGCGCTTTTCGCATTCGTCAAACTGGACCAAATAGTCGT GGAGCTCACTATTTGAATCTTGCTGGCTTGGAGCTGTATGGGACACTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118949:9..356+

>mRNA_M-pyrifera_M_contig118949.3897.1 ID=mRNA_M-pyrifera_M_contig118949.3897.1|Name=mRNA_M-pyrifera_M_contig118949.3897.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig118949:9..356+ (Macrocystis pyrifera P11B4 male)
AGTGTTTGCTTCACTGCGCCTGAACTCAACCAAGCGTGGGAGGTAGACTT
TGGTGCAGCTATTGCGTTTCGACCAACTGCGTATGCATTGCGTGATGGTG
AGGATGCGTTGGATGGAATGCTGCGAAACTGGGTGTTGGAAGGTACAAAT
GACTTTCGTCTGTGGAGTTCAATTGATGAGCACAAGAATGACCTTACTCT
AACCAACCCACAGCGAAGTGCCGTGTTTCATATCACTCCGAAGACGTTCT
TCAGGTCCTATCGCGCTTTTCGCATTCGTCAAACTGGACCAAATAGTCGT
GGAGCTCACTATTTGAATCTTGCTGGCTTGGAGCTGTATGGGACACTGAG
TGTTTGCTTCACTGCGCCTGAACTCAACCAAGCGTGGGAGGTAGACTTTG
GTGCAGCTATTGCGTTTCGACCAACTGCGTATGCATTGCGTGATGGTGAG
GATGCGTTGGATGGAATGCTGCGAAACTGGGTGTTGGAAGGTACAAATGA
CTTTCGTCTGTGGAGTTCAATTGATGAGCACAAGAATGACCTTACTCTAA
CCAACCCACAGCGAAGTGCCGTGTTTCATATCACTCCGAAGACGTTCTTC
AGGTCCTATCGCGCTTTTCGCATTCGTCAAACTGGACCAAATAGTCGTGG
AGCTCACTATTTGAATCTTGCTGGCTTGGAGCTGTATGGGACACTG
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