mRNA_M-pyrifera_M_contig118941.3896.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118941.3896.1
Unique NamemRNA_M-pyrifera_M_contig118941.3896.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118941.3896.1 vs. uniprot
Match: A0A3D5DCU1_9GAMM (Flavin-dependent oxidoreductase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DCU1_9GAMM)

HSP 1 Score: 209 bits (533), Expect = 1.460e-64
Identity = 93/112 (83.04%), Postives = 100/112 (89.29%), Query Frame = 1
Query:    1 REAGAFIWCNFFVPFGFNAAIAGPGEGPWDPPATFEALAESGLVIYGSPSTVNRKIEKLLADLPVDYLWMFVYNHMPHKALMRSFELLTNEVWPNFTDKIKPAGDKKAASAG 336
            R+AG+FIW  FF PFGFNAA AGPGEGPWDPPATFE L ESGL I+GSPST+NRKIE LL +LPVDYLWMF+YNHMPH ALMRS ELLTNEVWPNFTDKIKP+GDKK ASAG
Sbjct:  298 RDAGSFIWNKFFTPFGFNAATAGPGEGPWDPPATFENLVESGLCIHGSPSTINRKIEALLTELPVDYLWMFIYNHMPHSALMRSLELLTNEVWPNFTDKIKPSGDKKVASAG 409          
BLAST of mRNA_M-pyrifera_M_contig118941.3896.1 vs. uniprot
Match: A0A1Z8VA57_9PROT (Bac_luciferase domain-containing protein n=4 Tax=Proteobacteria TaxID=1224 RepID=A0A1Z8VA57_9PROT)

HSP 1 Score: 182 bits (463), Expect = 4.210e-54
Identity = 83/111 (74.77%), Postives = 91/111 (81.98%), Query Frame = 1
Query:    1 REAGAFIWCNFFVPFGFNAAIAGPGEGPWDPPATFEALAESGLVIYGSPSTVNRKIEKLLADLPVDYLWMFVYNHMPHKALMRSFELLTNEVWPNFTDKIKPAGDKKAASA 333
            REAGAFIW  FFVPFGFNAAIAGPGEGP+D PATFEA+ E GLVI+GSP TVNRK+E LL  LPVD  WMF+YNHMPH A M+S ELLT +VWPNFTDKI P+   K ASA
Sbjct:  297 REAGAFIWNEFFVPFGFNAAIAGPGEGPFDVPATFEAMVERGLVIHGSPDTVNRKLEVLLKQLPVDNFWMFIYNHMPHDACMKSLELLTEKVWPNFTDKINPSSSAKVASA 407          
BLAST of mRNA_M-pyrifera_M_contig118941.3896.1 vs. uniprot
Match: A0A1Z8WQT9_9GAMM (Bac_luciferase domain-containing protein n=1 Tax=Methylococcaceae bacterium TMED69 TaxID=1986766 RepID=A0A1Z8WQT9_9GAMM)

HSP 1 Score: 174 bits (441), Expect = 8.600e-51
Identity = 78/111 (70.27%), Postives = 90/111 (81.08%), Query Frame = 1
Query:    1 REAGAFIWCNFFVPFGFNAAIAGPGEGPWDPPATFEALAESGLVIYGSPSTVNRKIEKLLADLPVDYLWMFVYNHMPHKALMRSFELLTNEVWPNFTDKIKPAGDKKAASA 333
            REAG+FIW NFFVPFGF AAIA PG+GPWD PATFE+L+E+GL I+GSPSTV +K+EK L   PVDY W FVYNHMPHK LM+S ELLT +VWP FTDKIKP+   +  SA
Sbjct:  297 REAGSFIWNNFFVPFGFGAAIADPGQGPWDKPATFESLSEAGLCIHGSPSTVCKKLEKELKTYPVDYFWHFVYNHMPHKPLMKSLELLTEKVWPEFTDKIKPSNLTRVGSA 407          
BLAST of mRNA_M-pyrifera_M_contig118941.3896.1 vs. uniprot
Match: A0A3B8X401_9GAMM (Flavin-dependent oxidoreductase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3B8X401_9GAMM)

HSP 1 Score: 171 bits (434), Expect = 7.100e-50
Identity = 75/100 (75.00%), Postives = 85/100 (85.00%), Query Frame = 1
Query:    1 REAGAFIWCNFFVPFGFNAAIAGPGEGPWDPPATFEALAESGLVIYGSPSTVNRKIEKLLADLPVDYLWMFVYNHMPHKALMRSFELLTNEVWPNFTDKI 300
            R AG F+W NFFVPFGFNAA+A PGEGP+D PATFE +AE GLVIYGSP TVNRK+EKL  +LPVDY W FVYN+MPH  LMRS+ELLT +VWPNFTDK+
Sbjct:  297 RGAGEFVWNNFFVPFGFNAAVAKPGEGPFDIPATFETMAERGLVIYGSPDTVNRKLEKLFKELPVDYFWNFVYNYMPHDKLMRSYELLTEKVWPNFTDKV 396          
BLAST of mRNA_M-pyrifera_M_contig118941.3896.1 vs. uniprot
Match: A0A661EXT1_9GAMM (Flavin-dependent oxidoreductase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661EXT1_9GAMM)

HSP 1 Score: 169 bits (428), Expect = 6.210e-49
Identity = 73/102 (71.57%), Postives = 85/102 (83.33%), Query Frame = 1
Query:    1 REAGAFIWCNFFVPFGFNAAIAGPGEGPWDPPATFEALAESGLVIYGSPSTVNRKIEKLLADLPVDYLWMFVYNHMPHKALMRSFELLTNEVWPNFTDKIKP 306
            R AG F+W NFFVPFGFNAA+A PGEGP+D PATFE +AE GLVI+G+P TVNRK+EKLL D PVDY W FVYN+MPH   M+S+ELLT +VWPNFTDK+ P
Sbjct:  299 RGAGEFVWNNFFVPFGFNAAVAKPGEGPFDMPATFETMAERGLVIFGTPDTVNRKLEKLLKDFPVDYFWNFVYNYMPHDKWMKSYELLTEKVWPNFTDKVGP 400          
BLAST of mRNA_M-pyrifera_M_contig118941.3896.1 vs. uniprot
Match: A0A4S3JZH3_9GAMM (Alkanesulfonate monooxygenase SsuD/methylene tetrahydromethanopterin reductase-like flavin-dependent oxidoreductase (Luciferase family) n=1 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4S3JZH3_9GAMM)

HSP 1 Score: 163 bits (413), Expect = 9.900e-47
Identity = 73/102 (71.57%), Postives = 84/102 (82.35%), Query Frame = 1
Query:    1 REAGAFIWCNFFVPFGFNAAIAGPGE-GPWDPPATFEALAESGLVIYGSPSTVNRKIEKLLADLPVDYLWMFVYNHMPHKALMRSFELLTNEVWPNFTDKIK 303
            R+AGAFIWCNFF PFGFNAAIA P E  P+  P +FEA AE GLVIYGSP TVNRK+EKL  +LPVDY W+F+YNH+PH  LMRSFEL+T +VWPNFT KI+
Sbjct:  297 RDAGAFIWCNFFQPFGFNAAIATPEEKNPFTVPNSFEATAERGLVIYGSPDTVNRKLEKLFKELPVDYFWLFIYNHVPHAQLMRSFELMTTKVWPNFTSKIR 398          
BLAST of mRNA_M-pyrifera_M_contig118941.3896.1 vs. uniprot
Match: A0A836X1K8_9PROT (LLM class flavin-dependent oxidoreductase n=1 Tax=Sneathiellales bacterium TaxID=2528251 RepID=A0A836X1K8_9PROT)

HSP 1 Score: 151 bits (382), Expect = 3.910e-42
Identity = 70/102 (68.63%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 REAGAFIWCNFFVPFGFNAAIAGPGEGPWDP-PATFEALAESGLVIYGSPSTVNRKIEKLLADLPVDYLWMFVYNHM-PHKALMRSFELLTNEVWPNFTDKI 300
            R+AGAFIWCNFF PFGFNAA+A PGE P+   P TFE ++E GLVI+GSP TVNRK E+L   LP DY W F+YN + P KA MRSFELLT +VWPNFTDKI
Sbjct:  297 RDAGAFIWCNFFGPFGFNAAVAAPGEDPFHSFPNTFETISERGLVIHGSPDTVNRKFEELFKRLPCDYFWNFIYNQLLPQKAAMRSFELLTEKVWPNFTDKI 398          
BLAST of mRNA_M-pyrifera_M_contig118941.3896.1 vs. uniprot
Match: A0A3D3T4L8_9GAMM (Flavin-dependent oxidoreductase n=2 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A3D3T4L8_9GAMM)

HSP 1 Score: 144 bits (363), Expect = 2.410e-39
Identity = 64/101 (63.37%), Postives = 75/101 (74.26%), Query Frame = 1
Query:    1 REAGAFIWCNFFVPFGFNAAIAGPGEGPWDPPATFEALAESGLVIYGSPSTVNRKIEKLLADLPVDYLWMFVYNHM-PHKALMRSFELLTNEVWPNFTDKI 300
            R  G++IWCNFF PFGFNAA+A PGEGP+D P  FE + E GLVI GSP TV RK+EKL  DLP DY W+F YN + P   +MR FELLT +V P+FTDKI
Sbjct:  296 RNGGSYIWCNFFGPFGFNAAVANPGEGPFDVPNNFETMEERGLVICGSPDTVKRKLEKLFVDLPCDYFWLFTYNGLIPQSKMMRHFELLTEQVLPHFTDKI 396          
BLAST of mRNA_M-pyrifera_M_contig118941.3896.1 vs. uniprot
Match: A0A496X986_9GAMM (Flavin-dependent oxidoreductase n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A496X986_9GAMM)

HSP 1 Score: 141 bits (355), Expect = 3.650e-38
Identity = 62/102 (60.78%), Postives = 76/102 (74.51%), Query Frame = 1
Query:    1 REAGAFIWCNFFVPFGFNAAIAGPGEGPWDPPATFEALAESGLVIYGSPSTVNRKIEKLLADLPVDYLWMFVYNHM-PHKALMRSFELLTNEVWPNFTDKIK 303
            +  G++IWCNFF PFGFNAA+A PGEGP+D P  FE + E GLVI GSP TV RK+EKL  DLP DY W+F YN +   K +MR +ELLT +V P+FTD+IK
Sbjct:  296 KNGGSYIWCNFFGPFGFNAAVANPGEGPFDVPNNFETMLERGLVICGSPDTVKRKLEKLFTDLPCDYFWLFTYNGLISQKNMMRHYELLTEQVLPHFTDRIK 397          
BLAST of mRNA_M-pyrifera_M_contig118941.3896.1 vs. uniprot
Match: A0A1Y5G2L0_9GAMM (Bac_luciferase domain-containing protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Y5G2L0_9GAMM)

HSP 1 Score: 139 bits (351), Expect = 1.410e-37
Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    1 REAGAFIWCNFFVPFGFNAAIAGPGEGPWDPPATFEALAESGLVIYGSPSTVNRKIEKLLADLPVDYLWMFVYNHM-PHKALMRSFELLTNEVWPNFTDKIK 303
            ++ G +IWCNFF PFGFNAA+A PGE P+D P  FE + E GL+IYGSP TV RK E L  +LP DY W+F YN + P   +MR +ELLT +V P+FTDKIK
Sbjct:  296 KDGGNYIWCNFFQPFGFNAAVANPGESPFDVPNNFETMVERGLIIYGSPDTVKRKFEALFKELPCDYFWLFTYNGLVPQHQMMRHYELLTEQVLPHFTDKIK 397          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118941.3896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A3D5DCU1_9GAMM1.460e-6483.04Flavin-dependent oxidoreductase n=1 Tax=Gammaprote... [more]
A0A1Z8VA57_9PROT4.210e-5474.77Bac_luciferase domain-containing protein n=4 Tax=P... [more]
A0A1Z8WQT9_9GAMM8.600e-5170.27Bac_luciferase domain-containing protein n=1 Tax=M... [more]
A0A3B8X401_9GAMM7.100e-5075.00Flavin-dependent oxidoreductase n=1 Tax=Gammaprote... [more]
A0A661EXT1_9GAMM6.210e-4971.57Flavin-dependent oxidoreductase n=1 Tax=Gammaprote... [more]
A0A4S3JZH3_9GAMM9.900e-4771.57Alkanesulfonate monooxygenase SsuD/methylene tetra... [more]
A0A836X1K8_9PROT3.910e-4268.63LLM class flavin-dependent oxidoreductase n=1 Tax=... [more]
A0A3D3T4L8_9GAMM2.410e-3963.37Flavin-dependent oxidoreductase n=2 Tax=Porticocca... [more]
A0A496X986_9GAMM3.650e-3860.78Flavin-dependent oxidoreductase n=3 Tax=Gammaprote... [more]
A0A1Y5G2L0_9GAMM1.410e-3758.82Bac_luciferase domain-containing protein n=3 Tax=G... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118941contigM-pyrifera_M_contig118941:208..546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score69.3
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog1157640.AQWO01000011_gene3339
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Luciferase-like monooxygenase
EggNOG OGs2IF10@201174,COG2141@1,COG2141@2
COG Functional cat.C
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.4485626-CDS-M-pyrifera_M_contig118941:207..5461622815708.4485626-CDS-M-pyrifera_M_contig118941:207..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118941 208..546 -
1692277532.2354767-CDS-M-pyrifera_M_contig118941:207..5461692277532.2354767-CDS-M-pyrifera_M_contig118941:207..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118941 208..546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118941.3896.1prot_M-pyrifera_M_contig118941.3896.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118941 208..546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118941.3896.1

>prot_M-pyrifera_M_contig118941.3896.1 ID=prot_M-pyrifera_M_contig118941.3896.1|Name=mRNA_M-pyrifera_M_contig118941.3896.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
REAGAFIWCNFFVPFGFNAAIAGPGEGPWDPPATFEALAESGLVIYGSPS
TVNRKIEKLLADLPVDYLWMFVYNHMPHKALMRSFELLTNEVWPNFTDKI
KPAGDKKAASAG*
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mRNA from alignment at M-pyrifera_M_contig118941:208..546-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118941.3896.1 ID=mRNA_M-pyrifera_M_contig118941.3896.1|Name=mRNA_M-pyrifera_M_contig118941.3896.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig118941:208..546- (Macrocystis pyrifera P11B4 male)
CGTGAAGCCGGTGCATTCATCTGGTGTAACTTCTTTGTACCGTTCGGCTT CAACGCCGCGATCGCCGGTCCCGGCGAAGGCCCGTGGGATCCGCCGGCAA CGTTTGAAGCGCTGGCGGAATCCGGTCTCGTGATTTACGGCTCGCCGAGC ACGGTTAATCGCAAGATTGAAAAACTGCTCGCGGATTTGCCGGTCGATTA CCTGTGGATGTTCGTCTACAACCACATGCCGCACAAGGCGCTGATGCGCA GTTTCGAACTGCTCACGAACGAGGTGTGGCCGAACTTCACGGATAAAATC AAACCGGCCGGCGACAAGAAAGCCGCCTCCGCCGGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118941:208..546-

>mRNA_M-pyrifera_M_contig118941.3896.1 ID=mRNA_M-pyrifera_M_contig118941.3896.1|Name=mRNA_M-pyrifera_M_contig118941.3896.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig118941:208..546- (Macrocystis pyrifera P11B4 male)
CGTGAAGCCGGTGCATTCATCTGGTGTAACTTCTTTGTACCGTTCGGCTT
CAACGCCGCGATCGCCGGTCCCGGCGAAGGCCCGTGGGATCCGCCGGCAA
CGTTTGAAGCGCTGGCGGAATCCGGTCTCGTGATTTACGGCTCGCCGAGC
ACGGTTAATCGCAAGATTGAAAAACTGCTCGCGGATTTGCCGGTCGATTA
CCTGTGGATGTTCGTCTACAACCACATGCCGCACAAGGCGCTGATGCGCA
GTTTCGAACTGCTCACGAACGAGGTGTGGCCGAACTTCACGGATAAAATC
AAACCGGCCGGCGACAAGAAAGCCGCCTCCGCCGGCTGACGTGAAGCCGG
TGCATTCATCTGGTGTAACTTCTTTGTACCGTTCGGCTTCAACGCCGCGA
TCGCCGGTCCCGGCGAAGGCCCGTGGGATCCGCCGGCAACGTTTGAAGCG
CTGGCGGAATCCGGTCTCGTGATTTACGGCTCGCCGAGCACGGTTAATCG
CAAGATTGAAAAACTGCTCGCGGATTTGCCGGTCGATTACCTGTGGATGT
TCGTCTACAACCACATGCCGCACAAGGCGCTGATGCGCAGTTTCGAACTG
CTCACGAACGAGGTGTGGCCGAACTTCACGGATAAAATCAAACCGGCCGG
CGACAAGAAAGCCGCCTCCGCCGGCTGA
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