mRNA_M-pyrifera_M_contig118937.3894.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118937.3894.1
Unique NamemRNA_M-pyrifera_M_contig118937.3894.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118937.3894.1 vs. uniprot
Match: A0A2E7KHR2_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KHR2_9PLAN)

HSP 1 Score: 97.1 bits (240), Expect = 5.600e-24
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    1 SQTLYSRLEMTIRPLGSVPIVELVGKATIRNKETFSRNHYQRLEEIDIHSFREMIDLWVLEFAEQFAAAS 210
            +QTLYSRLEM +RP     I+ELV KATIRNKETF+R+HYQ + E DI SF++++DLW+LEFAEQF+  S
Sbjct:   91 AQTLYSRLEMIVRPFTETHIIELVAKATIRNKETFNRSHYQFIAEADIQSFQDLMDLWILEFAEQFSFQS 160          
BLAST of mRNA_M-pyrifera_M_contig118937.3894.1 vs. uniprot
Match: A0A517WV92_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WV92_9PLAN)

HSP 1 Score: 95.5 bits (236), Expect = 2.310e-23
Identity = 41/67 (61.19%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 SQTLYSRLEMTIRPLGSVPIVELVGKATIRNKETFSRNHYQRLEEIDIHSFREMIDLWVLEFAEQFA 201
            +Q+LYSRLEM +RP     I+ELV KATIRNKET++R+HYQ + E+D+ SF++++DLW+LEFAEQF+
Sbjct:   92 AQSLYSRLEMVVRPFTDTHIIELVAKATIRNKETYNRSHYQFIAEVDMQSFQDLVDLWILEFAEQFS 158          
BLAST of mRNA_M-pyrifera_M_contig118937.3894.1 vs. uniprot
Match: A0A518IBQ4_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IBQ4_9PLAN)

HSP 1 Score: 94.0 bits (232), Expect = 9.300e-23
Identity = 42/67 (62.69%), Postives = 56/67 (83.58%), Query Frame = 1
Query:    1 SQTLYSRLEMTIRPLGSVPIVELVGKATIRNKETFSRNHYQRLEEIDIHSFREMIDLWVLEFAEQFA 201
            +Q+LY+RLEM +RP     I+ELV KATIRNKETF+R+HYQ + E D+ SF++++DLWVLEFAEQF+
Sbjct:   92 AQSLYTRLEMVVRPFTETHIIELVAKATIRNKETFNRSHYQFVAEADMDSFKDLVDLWVLEFAEQFS 158          
BLAST of mRNA_M-pyrifera_M_contig118937.3894.1 vs. uniprot
Match: A0A517ZC50_9PLAN (Uncharacterized protein n=2 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517ZC50_9PLAN)

HSP 1 Score: 93.6 bits (231), Expect = 1.320e-22
Identity = 40/67 (59.70%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    4 QTLYSRLEMTIRPLGSVPIVELVGKATIRNKETFSRNHYQRLEEIDIHSFREMIDLWVLEFAEQFAA 204
            + +YSRLEM + PLG+  IVELV K TIRNKE F+R H+Q+L  +D+ SF+E++DLWVLE+AEQF++
Sbjct:   93 ENVYSRLEMLVSPLGTAAIVELVAKGTIRNKEVFNRKHFQQLSRVDVDSFKELVDLWVLEYAEQFSS 159          
BLAST of mRNA_M-pyrifera_M_contig118937.3894.1 vs. uniprot
Match: A0A7X7F052_9BACT (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7X7F052_9BACT)

HSP 1 Score: 90.1 bits (222), Expect = 7.050e-22
Identity = 41/65 (63.08%), Postives = 54/65 (83.08%), Query Frame = 1
Query:   13 YSRLEMTIRPLGSVPIVELVGKATIRNKETFSRNHYQRLEEIDIHSFREMIDLWVLEFAEQFAAA 207
            +SRLEM +RP+    ++EL  KAT+RNKE F+R+H+QRL E+DI SF EMIDLWVLEFAE++AA+
Sbjct:   41 FSRLEMLVRPISEYFVLELAAKATVRNKEFFNRSHFQRLAEVDITSFIEMIDLWVLEFAERYAAS 105          
BLAST of mRNA_M-pyrifera_M_contig118937.3894.1 vs. uniprot
Match: A0A3B1D3L1_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1D3L1_9ZZZZ)

HSP 1 Score: 91.7 bits (226), Expect = 7.310e-22
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    1 SQTLYSRLEMTIRPLGSVPIVELVGKATIRNKETFSRNHYQRLEEIDIHSFREMIDLWVLEFAEQFA 201
            S  LYSR EM IRP     IVEL+GKATIRNKE F+R HY  L E+D  +FRE+IDLWVL+FAEQ+A
Sbjct:   92 SGNLYSRFEMVIRPYSDAHIVELIGKATIRNKELFNRTHYHFLHELDEKTFRELIDLWVLDFAEQYA 158          
BLAST of mRNA_M-pyrifera_M_contig118937.3894.1 vs. uniprot
Match: A0A142WS42_9PLAN (Uncharacterized protein n=1 Tax=Planctomyces sp. SH-PL14 TaxID=1632864 RepID=A0A142WS42_9PLAN)

HSP 1 Score: 91.7 bits (226), Expect = 8.700e-22
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 SQTLYSRLEMTIRPLGSVPIVELVGKATIRNKETFSRNHYQRLEEIDIHSFREMIDLWVLEFAEQFAA 204
            S++LYSRLEM + PLG+ PIVE+V K TIRN+E F R HYQ+LE +D+    +MI+ WVLE+AEQ+AA
Sbjct:   99 SESLYSRLEMLVTPLGTAPIVEIVAKGTIRNREVFHRRHYQQLETLDVTVLEQMIEQWVLEYAEQYAA 166          
BLAST of mRNA_M-pyrifera_M_contig118937.3894.1 vs. uniprot
Match: A0A3E0NF82_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0NF82_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 2.070e-21
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 1
Query:   13 YSRLEMTIRPLGSVPIVELVGKATIRNKETFSRNHYQRLEEIDIHSFREMIDLWVLEFAEQFAAA 207
            +SRLEM +RPLG  P++EL  K TIRNKE ++R  YQ L+E+D+ SF E+I+LWVLE+AE FAAA
Sbjct:   95 FSRLEMVVRPLGKYPVIELAAKGTIRNKEVYNRQQYQPLDEVDLDSFVELIELWVLEYAELFAAA 159          
BLAST of mRNA_M-pyrifera_M_contig118937.3894.1 vs. uniprot
Match: A0A7Z9L8K3_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Z9L8K3_9PLAN)

HSP 1 Score: 90.5 bits (223), Expect = 2.230e-21
Identity = 40/66 (60.61%), Postives = 55/66 (83.33%), Query Frame = 1
Query:   13 YSRLEMTIRPLGSVPIVELVGKATIRNKETFSRNHYQRLEEIDIHSFREMIDLWVLEFAEQFAAAS 210
            YSRLE+TIRP  S  +V+L  K TIRNKE F+RNH++++E++DI ++R+MID+WVLEFAE +AA S
Sbjct:   97 YSRLEVTIRPFESYHVVDLAAKGTIRNKEVFNRNHFEKIEDVDITTYRKMIDVWVLEFAELYAANS 162          
BLAST of mRNA_M-pyrifera_M_contig118937.3894.1 vs. uniprot
Match: A0A836REY0_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836REY0_9PLAN)

HSP 1 Score: 90.5 bits (223), Expect = 2.230e-21
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 1
Query:    4 QTLYSRLEMTIRPLGSVPIVELVGKATIRNKETFSRNHYQRLEEIDIHSFREMIDLWVLEFAEQFAA 204
            Q+ YSRLEM IRP  +  IVEL  KATIRNKE F+R++YQ+L EID+ SF E+ID WVLEFAE+F+A
Sbjct:   94 QSFYSRLEMVIRPFTNTHIVELAAKATIRNKELFNRSYYQKLSEIDLPSFIEVIDQWVLEFAERFSA 160          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118937.3894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KHR2_9PLAN5.600e-2464.29Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A517WV92_9PLAN2.310e-2361.19Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
A0A518IBQ4_9PLAN9.300e-2362.69Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517ZC50_9PLAN1.320e-2259.70Uncharacterized protein n=2 Tax=Maioricimonas rari... [more]
A0A7X7F052_9BACT7.050e-2263.08Uncharacterized protein n=1 Tax=Pirellulaceae bact... [more]
A0A3B1D3L1_9ZZZZ7.310e-2265.67Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A142WS42_9PLAN8.700e-2260.29Uncharacterized protein n=1 Tax=Planctomyces sp. S... [more]
A0A3E0NF82_9BACT2.070e-2161.54Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7Z9L8K3_9PLAN2.230e-2160.61Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A836REY0_9PLAN2.230e-2165.67Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118937contigM-pyrifera_M_contig118937:331..546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score76.3
Seed ortholog evalue5.9e-12
Seed eggNOG ortholog344747.PM8797T_32080
Hectar predicted targeting categoryother localisation
EggNOG OGs2C7H4@1,2IZXB@203682,315Z8@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size216
Cds size189
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.2430203-CDS-M-pyrifera_M_contig118937:330..5191622815708.2430203-CDS-M-pyrifera_M_contig118937:330..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118937 331..519 -
1692277532.0980237-CDS-M-pyrifera_M_contig118937:330..5191692277532.0980237-CDS-M-pyrifera_M_contig118937:330..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118937 331..519 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.2578225-UTR-M-pyrifera_M_contig118937:519..5461622815708.2578225-UTR-M-pyrifera_M_contig118937:519..546Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118937 520..546 -
1692277532.1078444-UTR-M-pyrifera_M_contig118937:519..5461692277532.1078444-UTR-M-pyrifera_M_contig118937:519..546Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118937 520..546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118937.3894.1prot_M-pyrifera_M_contig118937.3894.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118937 331..519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118937.3894.1

>prot_M-pyrifera_M_contig118937.3894.1 ID=prot_M-pyrifera_M_contig118937.3894.1|Name=mRNA_M-pyrifera_M_contig118937.3894.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
MTIRPLGSVPIVELVGKATIRNKETFSRNHYQRLEEIDIHSFREMIDLWV
LEFAEQFAAASK*
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mRNA from alignment at M-pyrifera_M_contig118937:331..546-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118937.3894.1 ID=mRNA_M-pyrifera_M_contig118937.3894.1|Name=mRNA_M-pyrifera_M_contig118937.3894.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig118937:331..546- (Macrocystis pyrifera P11B4 male)
AGCCAGACGCTCTACAGTCGTCTGGAAATGACGATCCGTCCGCTGGGATC GGTCCCCATCGTCGAACTCGTCGGTAAGGCGACAATTCGCAACAAGGAGA CCTTCAGCCGCAATCACTATCAGCGGCTCGAAGAGATCGACATTCATTCA TTCCGCGAGATGATCGACCTCTGGGTCCTCGAGTTTGCAGAGCAGTTCGC CGCCGCCTCAAAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118937:331..546-

>mRNA_M-pyrifera_M_contig118937.3894.1 ID=mRNA_M-pyrifera_M_contig118937.3894.1|Name=mRNA_M-pyrifera_M_contig118937.3894.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig118937:331..546- (Macrocystis pyrifera P11B4 male)
ATGACGATCCGTCCGCTGGGATCGGTCCCCATCGTCGAACTCGTCGGTAA
GGCGACAATTCGCAACAAGGAGACCTTCAGCCGCAATCACTATCAGCGGC
TCGAAGAGATCGACATTCATTCATTCCGCGAGATGATCGACCTCTGGGTC
CTCGAGTTTGCAGAGCAGTTCGCCGCCGCCTCAAAGTAGATGACGATCCG
TCCGCTGGGATCGGTCCCCATCGTCGAACTCGTCGGTAAGGCGACAATTC
GCAACAAGGAGACCTTCAGCCGCAATCACTATCAGCGGCTCGAAGAGATC
GACATTCATTCATTCCGCGAGATGATCGACCTCTGGGTCCTCGAGTTTGC
AGAGCAGTTCGCCGCCGCCTCAAAGTAG
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