mRNA_M-pyrifera_M_contig118933.3891.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118933.3891.1
Unique NamemRNA_M-pyrifera_M_contig118933.3891.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118933.3891.1 vs. uniprot
Match: A0A1I3Q2S9_9PLAN (RHS repeat-associated core domain-containing protein n=2 Tax=Planctomicrobium piriforme TaxID=1576369 RepID=A0A1I3Q2S9_9PLAN)

HSP 1 Score: 84.7 bits (208), Expect = 3.090e-17
Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:    1 SETEYDERGRTVRTIRLESLDITVDPTTGDSTLAASGLALWSTETFYDAEGRVHQQISADGQTTEYEYDALGRQIAMIGTAVLIDGV 261
            ++T YD  GR V+++RL  + IT+    GD+TL+++G AL ST+T YDA+GRV +QI A G  T YEYDALGRQ A IGT + +  V
Sbjct: 8500 TQTIYDSLGREVKSVRLSGVQITISGA-GDATLSSAGTALSSTQTVYDADGRVSKQIGAAGDVTTYEYDALGRQSATIGTPLALAAV 8585
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BLAST of mRNA_M-pyrifera_M_contig118933.3891.1 vs. uniprot
Match: UPI001AC895C7 (tRNA(Glu)-specific nuclease WapA n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=UPI001AC895C7)

HSP 1 Score: 53.9 bits (128), Expect = 2.100e-6
Identity = 35/80 (43.75%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:   13 YDERGRTVRTIRLES---LDITVDPTTGDSTL---AASGLALWSTETFYDAEGRVHQQISADGQTTEYEYDALGRQIAMI 234
            YD+ GR VR IR  S    + ++DP  G  +    A +   L +T+TFYDA+GRV     A G TT YEYD LGR+  +I
Sbjct: 1336 YDDEGRQVRVIRNASSPGYNTSLDPALGHYSARPDAGTDEDL-TTQTFYDAQGRVQATADAGGMTTHYEYDVLGRRTRVI 1414
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BLAST of mRNA_M-pyrifera_M_contig118933.3891.1 vs. uniprot
Match: A0A1G1CJJ1_9BACT (Uncharacterized protein n=1 Tax=Lentisphaerae bacterium RIFOXYB12_FULL_65_16 TaxID=1798581 RepID=A0A1G1CJJ1_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 2.830e-6
Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:    1 SETEYDERGRTVRTIRLESLDITVD----PTTGDSTLAASGLALWSTETFYDAEGRVHQQISADGQTTEYEYDALGRQIAMI 234
            S T YD  GR  R+ RL ++ I +     P    S   ++     ST + YDA G+V + I+AD + T YEYDA GRQ A+I
Sbjct:  259 SRTVYDSIGRVARSERLSNVVIDIVAAGVPACPSSVFLSAATVTSSTSSRYDAAGQVLESINADNEVTRYEYDASGRQTAVI 340
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BLAST of mRNA_M-pyrifera_M_contig118933.3891.1 vs. uniprot
Match: A0A7X7F117_9BACT (RHS repeat protein (Fragment) n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7X7F117_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 1.300e-5
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 1 
Query:   13 YDERGRTVRTIRLESLDI-TVDPTTGDSTLAASGLALWSTETFYDAEGRVHQQI--------SADGQTTEYEYDALGRQIAMIGTAVL 249
            YDE+GR V+ +RLE +++  VD   GD+ ++  G  +W           V + I        ++   TTEYEYD+LGRQIA +G AVL
Sbjct:  238 YDEKGRAVKKLRLEGVEVGLVD---GDTVVSDWGSEVWRXXXXXXXXXXVWKSIGRHDASDPNSARPTTEYEYDSLGRQIAALGPAVL 322
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BLAST of mRNA_M-pyrifera_M_contig118933.3891.1 vs. uniprot
Match: A0A2E2B1J7_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E2B1J7_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 4.810e-5
Identity = 30/78 (38.46%), Postives = 38/78 (48.72%), Query Frame = 1 
Query:   13 YDERGRTVRTIRLESLDITVDPTTGDSTLAASGLAL-------WSTETFYDAEGRVHQQISADGQTTEYEYDALGRQI 225
            YD  GR + T  L+ + I + P      L  +            S++T YDA GRV+Q IS  G  T YEYD  GRQI
Sbjct: 2990 YDALGRVIETQYLKGVTIDIAPDAEHDGLYVTSFTYPTTPDIQTSSQTVYDAAGRVYQSISTTGTVTTYEYDTAGRQI 3067
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118933.3891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1I3Q2S9_9PLAN3.090e-1751.72RHS repeat-associated core domain-containing prote... [more]
UPI001AC895C72.100e-643.75tRNA(Glu)-specific nuclease WapA n=1 Tax=Anaerolin... [more]
A0A1G1CJJ1_9BACT2.830e-640.24Uncharacterized protein n=1 Tax=Lentisphaerae bact... [more]
A0A7X7F117_9BACT1.300e-538.64RHS repeat protein (Fragment) n=1 Tax=Pirellulacea... [more]
A0A2E2B1J7_9BACT4.810e-538.46Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118933contigM-pyrifera_M_contig118933:195..455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.0
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog344747.PM8797T_31438
KEGG koko:K07192,ko:K14194,ko:K15125
KEGG Pathwayko04910,ko05133,ko05150,map04910,map05133,map05150
Hectar predicted targeting categoryother localisation
EggNOG free text desc.domain protein
EggNOG OGs2IYH3@203682,COG2268@1,COG2268@2,COG2885@1,COG2885@2,COG3209@1,COG3209@2,COG3210@1,COG3210@2,COG3291@1,COG3291@2,COG4254@1,COG4254@2,COG4932@1,COG4932@2,COG5276@1,COG5276@2
COG Functional cat.M
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03036,ko04131,ko04147
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.114122-CDS-M-pyrifera_M_contig118933:194..4551622815708.114122-CDS-M-pyrifera_M_contig118933:194..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118933 195..455 -
1692277532.036526-CDS-M-pyrifera_M_contig118933:194..4551692277532.036526-CDS-M-pyrifera_M_contig118933:194..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118933 195..455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118933.3891.1prot_M-pyrifera_M_contig118933.3891.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118933 195..455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118933.3891.1

>prot_M-pyrifera_M_contig118933.3891.1 ID=prot_M-pyrifera_M_contig118933.3891.1|Name=mRNA_M-pyrifera_M_contig118933.3891.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
SETEYDERGRTVRTIRLESLDITVDPTTGDSTLAASGLALWSTETFYDAE
GRVHQQISADGQTTEYEYDALGRQIAMIGTAVLIDGV
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mRNA from alignment at M-pyrifera_M_contig118933:195..455-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118933.3891.1 ID=mRNA_M-pyrifera_M_contig118933.3891.1|Name=mRNA_M-pyrifera_M_contig118933.3891.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig118933:195..455- (Macrocystis pyrifera P11B4 male)
TCGGAGACGGAATACGACGAGCGCGGCCGCACGGTGAGGACCATCCGCCT
CGAAAGTCTCGACATCACAGTTGATCCTACCACCGGTGACTCCACGCTCG
CCGCTAGCGGATTAGCACTGTGGAGTACAGAAACGTTCTACGATGCCGAA
GGCCGCGTCCACCAACAGATCAGCGCCGACGGCCAAACCACCGAGTACGA
ATACGACGCCCTCGGTCGGCAGATTGCCATGATCGGCACTGCCGTGTTGA
TCGACGGTGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118933:195..455-

>mRNA_M-pyrifera_M_contig118933.3891.1 ID=mRNA_M-pyrifera_M_contig118933.3891.1|Name=mRNA_M-pyrifera_M_contig118933.3891.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig118933:195..455- (Macrocystis pyrifera P11B4 male)
TCGGAGACGGAATACGACGAGCGCGGCCGCACGGTGAGGACCATCCGCCT
CGAAAGTCTCGACATCACAGTTGATCCTACCACCGGTGACTCCACGCTCG
CCGCTAGCGGATTAGCACTGTGGAGTACAGAAACGTTCTACGATGCCGAA
GGCCGCGTCCACCAACAGATCAGCGCCGACGGCCAAACCACCGAGTACGA
ATACGACGCCCTCGGTCGGCAGATTGCCATGATCGGCACTGCCGTGTTGA
TCGACGGTGTCTCGGAGACGGAATACGACGAGCGCGGCCGCACGGTGAGG
ACCATCCGCCTCGAAAGTCTCGACATCACAGTTGATCCTACCACCGGTGA
CTCCACGCTCGCCGCTAGCGGATTAGCACTGTGGAGTACAGAAACGTTCT
ACGATGCCGAAGGCCGCGTCCACCAACAGATCAGCGCCGACGGCCAAACC
ACCGAGTACGAATACGACGCCCTCGGTCGGCAGATTGCCATGATCGGCAC
TGCCGTGTTGATCGACGGTGTC
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