mRNA_M-pyrifera_M_contig118918.3888.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118918.3888.1
Unique NamemRNA_M-pyrifera_M_contig118918.3888.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118918.3888.1 vs. uniprot
Match: UPI001907711E (hypothetical protein n=1 Tax=Streptomyces sp. HSG2 TaxID=2797167 RepID=UPI001907711E)

HSP 1 Score: 50.8 bits (120), Expect = 4.680e-5
Identity = 35/102 (34.31%), Postives = 51/102 (50.00%), Query Frame = 1 
Query:    4 STLEVYNSTFDGNVGSTYGALVSEDAHFNIVESTFVNNQCLGVGNQQGGAMF--LGGSVGNITDCLLSNNAAGSGGAIFVDNCDVDLSGSLFQGNSALESGG 303
            S LE+  S F GN   T+G + + +    I +S F NN         G A+   LGG+        L++ A  +GGA++V + D+ L  S   GNSAL +GG
Sbjct:  304 SKLEITASKFTGNTSRTWGTIATFNGATTIAKSLFKNNTA-----DLGPAVTSALGGTTDIDKSAFLNHRATSTGGAVYVQDTDLQLRRSTVAGNSALVAGG 400
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118918.3888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001907711E4.680e-534.31hypothetical protein n=1 Tax=Streptomyces sp. HSG2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118918contigM-pyrifera_M_contig118918:204..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.0051236-CDS-M-pyrifera_M_contig118918:203..5211622815708.0051236-CDS-M-pyrifera_M_contig118918:203..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118918 204..521 +
1692277532.0014997-CDS-M-pyrifera_M_contig118918:203..5211692277532.0014997-CDS-M-pyrifera_M_contig118918:203..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118918 204..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118918.3888.1prot_M-pyrifera_M_contig118918.3888.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118918 204..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118918.3888.1

>prot_M-pyrifera_M_contig118918.3888.1 ID=prot_M-pyrifera_M_contig118918.3888.1|Name=mRNA_M-pyrifera_M_contig118918.3888.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
SSTLEVYNSTFDGNVGSTYGALVSEDAHFNIVESTFVNNQCLGVGNQQGG
AMFLGGSVGNITDCLLSNNAAGSGGAIFVDNCDVDLSGSLFQGNSALESG
GGVYCS
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mRNA from alignment at M-pyrifera_M_contig118918:204..521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118918.3888.1 ID=mRNA_M-pyrifera_M_contig118918.3888.1|Name=mRNA_M-pyrifera_M_contig118918.3888.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig118918:204..521+ (Macrocystis pyrifera P11B4 male)
TCTTCAACCCTCGAGGTGTACAACTCCACGTTCGACGGCAACGTTGGCAG
TACGTATGGGGCGCTCGTGTCGGAAGACGCACACTTTAACATTGTGGAGT
CTACCTTTGTCAACAACCAGTGCCTGGGGGTTGGCAACCAGCAGGGAGGC
GCCATGTTCCTCGGTGGCTCCGTGGGCAACATCACAGACTGTCTCCTATC
CAACAACGCAGCTGGCAGCGGTGGCGCCATTTTCGTGGACAACTGTGATG
TTGACCTCAGCGGCAGTCTCTTCCAAGGCAACAGTGCCCTGGAGTCTGGC
GGCGGAGTCTACTGCAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118918:204..521+

>mRNA_M-pyrifera_M_contig118918.3888.1 ID=mRNA_M-pyrifera_M_contig118918.3888.1|Name=mRNA_M-pyrifera_M_contig118918.3888.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig118918:204..521+ (Macrocystis pyrifera P11B4 male)
TCTTCAACCCTCGAGGTGTACAACTCCACGTTCGACGGCAACGTTGGCAG
TACGTATGGGGCGCTCGTGTCGGAAGACGCACACTTTAACATTGTGGAGT
CTACCTTTGTCAACAACCAGTGCCTGGGGGTTGGCAACCAGCAGGGAGGC
GCCATGTTCCTCGGTGGCTCCGTGGGCAACATCACAGACTGTCTCCTATC
CAACAACGCAGCTGGCAGCGGTGGCGCCATTTTCGTGGACAACTGTGATG
TTGACCTCAGCGGCAGTCTCTTCCAAGGCAACAGTGCCCTGGAGTCTGGC
GGCGGAGTCTACTGCAGTTCTTCAACCCTCGAGGTGTACAACTCCACGTT
CGACGGCAACGTTGGCAGTACGTATGGGGCGCTCGTGTCGGAAGACGCAC
ACTTTAACATTGTGGAGTCTACCTTTGTCAACAACCAGTGCCTGGGGGTT
GGCAACCAGCAGGGAGGCGCCATGTTCCTCGGTGGCTCCGTGGGCAACAT
CACAGACTGTCTCCTATCCAACAACGCAGCTGGCAGCGGTGGCGCCATTT
TCGTGGACAACTGTGATGTTGACCTCAGCGGCAGTCTCTTCCAAGGCAAC
AGTGCCCTGGAGTCTGGCGGCGGAGTCTACTGCAGT
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