mRNA_M-pyrifera_M_contig118767.3865.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118767.3865.1
Unique NamemRNA_M-pyrifera_M_contig118767.3865.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A2E8N7D5_9ACTN (ABC transporter permease n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8N7D5_9ACTN)

HSP 1 Score: 84.7 bits (208), Expect = 2.320e-18
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 1
Query:    1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIREALAALRR 174
            RVP IMVTS LLGAVAVV GLLVS+HHGTAGGATIAG+SV QFF++LA+REA  AL+R
Sbjct:  217 RVPVIMVTSMLLGAVAVVSGLLVSYHHGTAGGATIAGISVTQFFLLLAVREAAEALKR 274          
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A7Y2DSL9_9ACTN (Metal ABC transporter permease n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DSL9_9ACTN)

HSP 1 Score: 84.0 bits (206), Expect = 4.590e-18
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 1
Query:    1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIREALAALRRTR 180
            RVPAIM  S LLGA+AV+ GL+VSFH+GTAGGATIAG SVL+FF+VLA REAL ALRR R
Sbjct:  217 RVPAIMAASILLGALAVIAGLVVSFHYGTAGGATIAGFSVLEFFVVLAGREALVALRRAR 276          
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A2E5NQ91_9ACTN (ABC transporter permease n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5NQ91_9ACTN)

HSP 1 Score: 79.0 bits (193), Expect = 3.500e-16
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1
Query:    1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIREALAALRR 174
            RVPAIM+TS LLGA+AVV GLLVS+H+ TAGGATIAG SV QFF+VLA+RE   ALRR
Sbjct:  217 RVPAIMMTSILLGALAVVSGLLVSYHYNTAGGATIAGFSVAQFFLVLAVREITEALRR 274          
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A520Y499_9ACTN (Metal ABC transporter permease n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520Y499_9ACTN)

HSP 1 Score: 77.8 bits (190), Expect = 9.520e-16
Identity = 45/59 (76.27%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIREALAALRRT 177
            RVP IM  S LLGAVAV  GLLVSFH GTAGGATIAG SVL+FF+VL  REA  ALRRT
Sbjct:  217 RVPLIMALSMLLGAVAVFAGLLVSFHFGTAGGATIAGFSVLEFFVVLLAREAREALRRT 275          
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A4R7I3B5_9ACTN (Manganese/iron transport system permease protein n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7I3B5_9ACTN)

HSP 1 Score: 69.7 bits (169), Expect = 9.780e-13
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIREALAALRRTR 180
            RVP +M+ S + GAVAVV GL +SFH+GTAGGAT+AGLSV QFF+VLA  E + A+R  R
Sbjct:  215 RVPVMMIVSMVFGAVAVVAGLTISFHYGTAGGATMAGLSVAQFFVVLAGVEIIRAVREYR 274          
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A2E9XAH9_9ACTN (ABC transporter permease n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A2E9XAH9_9ACTN)

HSP 1 Score: 69.3 bits (168), Expect = 1.380e-12
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1
Query:    1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIRE 153
            RVP IM+ S LLGA+AV VGLL+SFH+GTAGGAT+AGL VL+FF+VLA R 
Sbjct:  217 RVPVIMLVSMLLGALAVFVGLLLSFHYGTAGGATVAGLCVLEFFLVLAWRS 267          
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A2E7QB18_9ACTN (ABC transporter permease n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E7QB18_9ACTN)

HSP 1 Score: 68.9 bits (167), Expect = 1.910e-12
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIREALAALRRTR 180
            RVP IM  S LLG +AVV GL+VSFH+GTAGGAT+AG SVLQFFIVL  +E +  L + +
Sbjct:  217 RVPGIMFVSILLGILAVVAGLVVSFHYGTAGGATMAGFSVLQFFIVLVGKELIQTLNKLK 276          
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A2E0EDT8_9ACTN (ABC transporter permease n=3 Tax=Actinobacteria TaxID=201174 RepID=A0A2E0EDT8_9ACTN)

HSP 1 Score: 68.9 bits (167), Expect = 2.040e-12
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIRE 153
            RVP IM+ S  +GA+AV VGLL+SFH+GTAGGATIAGL VLQFF+VL IR 
Sbjct:  217 RVPLIMLVSMFVGALAVFVGLLLSFHYGTAGGATIAGLCVLQFFLVLGIRS 267          
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A7M3MNZ8_9ACTN (Metal ABC transporter permease n=2 Tax=Nitriliruptor sp. TaxID=2448056 RepID=A0A7M3MNZ8_9ACTN)

HSP 1 Score: 68.6 bits (166), Expect = 2.800e-12
Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = 1
Query:    1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIREALAALRR 174
            RVP +M  + L+G+V+V+ GLLVSFH+GTA  ATIAGL+VL FF+VL +REA+ A+RR
Sbjct:  218 RVPVMMAVAVLVGSVSVIAGLLVSFHYGTATAATIAGLTVLLFFLVLTVREAVDAVRR 275          
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A351DFJ5_9ACTN (Metal ABC transporter permease (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351DFJ5_9ACTN)

HSP 1 Score: 64.3 bits (155), Expect = 3.920e-12
Identity = 32/47 (68.09%), Postives = 42/47 (89.36%), Query Frame = 1
Query:    1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVL 141
            +VP IM+ S L+G +AVV GLL+SFH+GTAGGAT+AG+SVL+FFIV+
Sbjct:   16 KVPLIMLVSILVGFIAVVAGLLISFHYGTAGGATMAGISVLEFFIVM 62          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8N7D5_9ACTN2.320e-1879.31ABC transporter permease n=1 Tax=Acidimicrobiaceae... [more]
A0A7Y2DSL9_9ACTN4.590e-1876.67Metal ABC transporter permease n=1 Tax=Acidimicrob... [more]
A0A2E5NQ91_9ACTN3.500e-1675.86ABC transporter permease n=2 Tax=Acidimicrobiaceae... [more]
A0A520Y499_9ACTN9.520e-1676.27Metal ABC transporter permease n=1 Tax=Acidimicrob... [more]
A0A4R7I3B5_9ACTN9.780e-1363.33Manganese/iron transport system permease protein n... [more]
A0A2E9XAH9_9ACTN1.380e-1272.55ABC transporter permease n=2 Tax=Actinobacteria Ta... [more]
A0A2E7QB18_9ACTN1.910e-1263.33ABC transporter permease n=1 Tax=Acidimicrobiaceae... [more]
A0A2E0EDT8_9ACTN2.040e-1272.55ABC transporter permease n=3 Tax=Actinobacteria Ta... [more]
A0A7M3MNZ8_9ACTN2.800e-1262.07Metal ABC transporter permease n=2 Tax=Nitrilirupt... [more]
A0A351DFJ5_9ACTN3.920e-1268.09Metal ABC transporter permease (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118767contigM-pyrifera_M_contig118767:6..185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size180
Cds size165
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.7833662-UTR-M-pyrifera_M_contig118767:5..201622815706.7833662-UTR-M-pyrifera_M_contig118767:5..20Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118767 6..20 +
1692277531.3705041-UTR-M-pyrifera_M_contig118767:5..201692277531.3705041-UTR-M-pyrifera_M_contig118767:5..20Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118767 6..20 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.7997177-CDS-M-pyrifera_M_contig118767:20..1851622815706.7997177-CDS-M-pyrifera_M_contig118767:20..185Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118767 21..185 +
1692277531.3804731-CDS-M-pyrifera_M_contig118767:20..1851692277531.3804731-CDS-M-pyrifera_M_contig118767:20..185Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118767 21..185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118767.3865.1prot_M-pyrifera_M_contig118767.3865.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118767 21..185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118767.3865.1

>prot_M-pyrifera_M_contig118767.3865.1 ID=prot_M-pyrifera_M_contig118767.3865.1|Name=mRNA_M-pyrifera_M_contig118767.3865.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
MVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIREALAA
LRRTR
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mRNA from alignment at M-pyrifera_M_contig118767:6..185+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118767.3865.1 ID=mRNA_M-pyrifera_M_contig118767.3865.1|Name=mRNA_M-pyrifera_M_contig118767.3865.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig118767:6..185+ (Macrocystis pyrifera P11B4 male)
CGGGTGCCGGCCATCATGGTGACTTCGACGCTGCTGGGAGCGGTGGCGGT TGTAGTCGGGCTCCTTGTGAGCTTTCACCACGGCACAGCGGGCGGCGCCA CCATCGCCGGCTTGAGCGTCCTGCAGTTCTTCATCGTGCTTGCGATTCGT GAGGCGCTCGCCGCGCTGCGCCGAACGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118767:6..185+

>mRNA_M-pyrifera_M_contig118767.3865.1 ID=mRNA_M-pyrifera_M_contig118767.3865.1|Name=mRNA_M-pyrifera_M_contig118767.3865.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig118767:6..185+ (Macrocystis pyrifera P11B4 male)
ATGGTGACTTCGACGCTGCTGGGAGCGGTGGCGGTTGTAGTCGGGCTCCT
TGTGAGCTTTCACCACGGCACAGCGGGCGGCGCCACCATCGCCGGCTTGA
GCGTCCTGCAGTTCTTCATCGTGCTTGCGATTCGTGAGGCGCTCGCCGCG
CTGCGCCGAACGCGCATGGTGACTTCGACGCTGCTGGGAGCGGTGGCGGT
TGTAGTCGGGCTCCTTGTGAGCTTTCACCACGGCACAGCGGGCGGCGCCA
CCATCGCCGGCTTGAGCGTCCTGCAGTTCTTCATCGTGCTTGCGATTCGT
GAGGCGCTCGCCGCGCTGCGCCGAACGCGC
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