mRNA_M-pyrifera_M_contig118718.3852.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118718.3852.1
Unique NamemRNA_M-pyrifera_M_contig118718.3852.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118718.3852.1 vs. uniprot
Match: L8GWB9_ACACA (Signal transducer and activator of transcription STAT family protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GWB9_ACACA)

HSP 1 Score: 103 bits (256), Expect = 2.600e-23
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 1 
Query:   22 PIPQVIFKGKIIEDEYSVRLVVGTRMEVRSVSNVKAALVSEEKVWKIAEPLENDTCSLDAYNSVGTFSQIKVKVSSRMAPVYLKFGIQVLTSNASTPVTVQSNASFPFI 348
            P PQV+FKGK +ED Y + L+ G+ + ++++S VKA LV+EEK WK  +P+END  ++D+   V TF  IK+ VS+RM+ VYLKF +QV   N  T  T++S  S P I
Sbjct:  231 PTPQVLFKGKTLEDNYVLALLSGSNVNIQNISKVKAILVAEEKNWKNKKPIENDVQAMDSMKRVLTFHNIKLNVSTRMSMVYLKFAVQVTLQNGGTH-TIESAGSSPII 338
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BLAST of mRNA_M-pyrifera_M_contig118718.3852.1 vs. uniprot
Match: UPI000644B294 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644B294)

HSP 1 Score: 60.1 bits (144), Expect = 3.880e-8
Identity = 46/120 (38.33%), Postives = 63/120 (52.50%), Query Frame = 1 
Query:    4 LLVEGQPIPQVIFKG-KIIEDEYSVRLVVGTRMEVRSVSNVKAALVSEEKVWK----IAEPLENDTCSLDAYNSVGTFSQIKVKVSSRMAPVYLKFGIQVLTSNASTPVTVQSNASFPFI 348
            +++  QP  QVIF+G K I + + V LV G  M   SVS V A +   E   K      E LEN+  SLD  N   TFS +KV +S+RM+P YLKF   V    + T   ++S  + P +
Sbjct:  373 IILVQQPASQVIFRGGKGISEPFKVELVTGVVMP-ESVSVVVAKIDKNETTKKEKAAAKETLENNESSLDNSNRA-TFSNLKVNISTRMSPSYLKFVATVKDRGSKTGKIIESVQTNPLV 490
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118718.3852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
L8GWB9_ACACA2.600e-2347.71Signal transducer and activator of transcription S... [more]
UPI000644B2943.880e-838.33hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118718contigM-pyrifera_M_contig118718:4..351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.0487401-CDS-M-pyrifera_M_contig118718:3..3511622815706.0487401-CDS-M-pyrifera_M_contig118718:3..351Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118718 4..351 -
1692277531.043445-CDS-M-pyrifera_M_contig118718:3..3511692277531.043445-CDS-M-pyrifera_M_contig118718:3..351Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118718 4..351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118718.3852.1prot_M-pyrifera_M_contig118718.3852.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118718 4..351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118718.3852.1

>prot_M-pyrifera_M_contig118718.3852.1 ID=prot_M-pyrifera_M_contig118718.3852.1|Name=mRNA_M-pyrifera_M_contig118718.3852.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
MLLVEGQPIPQVIFKGKIIEDEYSVRLVVGTRMEVRSVSNVKAALVSEEK
VWKIAEPLENDTCSLDAYNSVGTFSQIKVKVSSRMAPVYLKFGIQVLTSN
ASTPVTVQSNASFPFI
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mRNA from alignment at M-pyrifera_M_contig118718:4..351-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118718.3852.1 ID=mRNA_M-pyrifera_M_contig118718.3852.1|Name=mRNA_M-pyrifera_M_contig118718.3852.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig118718:4..351- (Macrocystis pyrifera P11B4 male)
ATGCTCCTCGTGGAGGGCCAGCCCATTCCCCAGGTGATTTTCAAGGGCAA
GATCATTGAGGACGAGTACTCTGTTCGGTTGGTGGTGGGCACGAGAATGG
AAGTGCGGTCGGTGAGCAACGTTAAGGCCGCGCTGGTGTCGGAGGAAAAG
GTGTGGAAGATTGCAGAGCCGCTGGAGAACGACACCTGCAGTCTGGATGC
CTACAACAGCGTGGGCACCTTTTCACAGATCAAGGTTAAGGTCTCCAGCA
GGATGGCTCCTGTCTACCTCAAGTTCGGCATCCAGGTCCTCACGAGCAAC
GCTTCCACGCCTGTCACGGTCCAGTCCAATGCCAGCTTCCCCTTCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118718:4..351-

>mRNA_M-pyrifera_M_contig118718.3852.1 ID=mRNA_M-pyrifera_M_contig118718.3852.1|Name=mRNA_M-pyrifera_M_contig118718.3852.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig118718:4..351- (Macrocystis pyrifera P11B4 male)
ATGCTCCTCGTGGAGGGCCAGCCCATTCCCCAGGTGATTTTCAAGGGCAA
GATCATTGAGGACGAGTACTCTGTTCGGTTGGTGGTGGGCACGAGAATGG
AAGTGCGGTCGGTGAGCAACGTTAAGGCCGCGCTGGTGTCGGAGGAAAAG
GTGTGGAAGATTGCAGAGCCGCTGGAGAACGACACCTGCAGTCTGGATGC
CTACAACAGCGTGGGCACCTTTTCACAGATCAAGGTTAAGGTCTCCAGCA
GGATGGCTCCTGTCTACCTCAAGTTCGGCATCCAGGTCCTCACGAGCAAC
GCTTCCACGCCTGTCACGGTCCAGTCCAATGCCAGCTTCCCCTTCATCAT
GCTCCTCGTGGAGGGCCAGCCCATTCCCCAGGTGATTTTCAAGGGCAAGA
TCATTGAGGACGAGTACTCTGTTCGGTTGGTGGTGGGCACGAGAATGGAA
GTGCGGTCGGTGAGCAACGTTAAGGCCGCGCTGGTGTCGGAGGAAAAGGT
GTGGAAGATTGCAGAGCCGCTGGAGAACGACACCTGCAGTCTGGATGCCT
ACAACAGCGTGGGCACCTTTTCACAGATCAAGGTTAAGGTCTCCAGCAGG
ATGGCTCCTGTCTACCTCAAGTTCGGCATCCAGGTCCTCACGAGCAACGC
TTCCACGCCTGTCACGGTCCAGTCCAATGCCAGCTTCCCCTTCATC
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