mRNA_M-pyrifera_M_contig118683.3844.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118683.3844.1
Unique NamemRNA_M-pyrifera_M_contig118683.3844.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118683.3844.1 vs. uniprot
Match: F0ZPN3_DICPU (Spatacsin_C domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZPN3_DICPU)

HSP 1 Score: 58.9 bits (141), Expect = 2.530e-7
Identity = 44/172 (25.58%), Postives = 76/172 (44.19%), Query Frame = 1 
Query:    1 MDHWQDMTDLQVVREGLQSNQLSLAYSLVLWRAICRREEG------------------SEGGESLP--------SMEDIMTAGFCFVYQCLTTGDMDMADKMLSCVGETRVEVLLEVLLHTKRKALRQSLLRFLSSRGAVVENY---PEVLEGVQFLTVLEERYSNPYYALE 429
            +D W+ M +L++++E L S  LS   S + W+   R ++G                  +    SL         + +D+     CFVYQ ++   +++A K+L  +G      L ++  +T R+ +R  LL  L S   V +     PE+LE + F + L+  Y N  Y  E
Sbjct: 1101 LDRWERMEELEIIKESLNSGNLSTLISYINWK---REKKGVLYQQPISNTLKQYQLQQTSSSSSLKFISPIGPFTFDDVQKISSCFVYQAVSQDQLEVAIKLLKTIGSPVSPNLKQLAFNTTRRNIRNLLLDALVSHPMVKDPSFFTPEILELIDFRSKLDSLYPNFSYHRE 1269
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118683.3844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
F0ZPN3_DICPU2.530e-725.58Spatacsin_C domain-containing protein n=1 Tax=Dict... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118683contigM-pyrifera_M_contig118683:5..433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size429
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.675363-CDS-M-pyrifera_M_contig118683:4..4331622815705.675363-CDS-M-pyrifera_M_contig118683:4..433Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118683 5..433 +
1692277530.9063087-CDS-M-pyrifera_M_contig118683:4..4331692277530.9063087-CDS-M-pyrifera_M_contig118683:4..433Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118683 5..433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118683.3844.1prot_M-pyrifera_M_contig118683.3844.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118683 5..433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118683.3844.1

>prot_M-pyrifera_M_contig118683.3844.1 ID=prot_M-pyrifera_M_contig118683.3844.1|Name=mRNA_M-pyrifera_M_contig118683.3844.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
MDHWQDMTDLQVVREGLQSNQLSLAYSLVLWRAICRREEGSEGGESLPSM
EDIMTAGFCFVYQCLTTGDMDMADKMLSCVGETRVEVLLEVLLHTKRKAL
RQSLLRFLSSRGAVVENYPEVLEGVQFLTVLEERYSNPYYALE
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mRNA from alignment at M-pyrifera_M_contig118683:5..433+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118683.3844.1 ID=mRNA_M-pyrifera_M_contig118683.3844.1|Name=mRNA_M-pyrifera_M_contig118683.3844.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig118683:5..433+ (Macrocystis pyrifera P11B4 male)
ATGGACCATTGGCAGGATATGACAGACTTACAGGTGGTCAGGGAAGGGCT
ACAGAGCAACCAGCTTTCTCTGGCCTACAGCCTTGTGCTATGGAGGGCAA
TTTGCCGGAGGGAAGAGGGCAGCGAAGGAGGAGAGAGCTTGCCGAGCATG
GAGGACATTATGACAGCTGGCTTTTGCTTTGTGTACCAGTGTCTTACCAC
GGGCGATATGGACATGGCCGACAAGATGCTCTCTTGCGTTGGCGAGACTC
GAGTGGAGGTGCTGTTGGAAGTTCTCCTCCACACGAAGAGGAAGGCTTTG
CGACAGAGCCTCCTCCGATTCTTGTCTTCCCGTGGAGCGGTTGTTGAGAA
CTACCCAGAGGTACTGGAGGGAGTGCAGTTCCTCACCGTTCTGGAGGAGA
GGTATTCCAACCCGTACTATGCATTGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118683:5..433+

>mRNA_M-pyrifera_M_contig118683.3844.1 ID=mRNA_M-pyrifera_M_contig118683.3844.1|Name=mRNA_M-pyrifera_M_contig118683.3844.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig118683:5..433+ (Macrocystis pyrifera P11B4 male)
ATGGACCATTGGCAGGATATGACAGACTTACAGGTGGTCAGGGAAGGGCT
ACAGAGCAACCAGCTTTCTCTGGCCTACAGCCTTGTGCTATGGAGGGCAA
TTTGCCGGAGGGAAGAGGGCAGCGAAGGAGGAGAGAGCTTGCCGAGCATG
GAGGACATTATGACAGCTGGCTTTTGCTTTGTGTACCAGTGTCTTACCAC
GGGCGATATGGACATGGCCGACAAGATGCTCTCTTGCGTTGGCGAGACTC
GAGTGGAGGTGCTGTTGGAAGTTCTCCTCCACACGAAGAGGAAGGCTTTG
CGACAGAGCCTCCTCCGATTCTTGTCTTCCCGTGGAGCGGTTGTTGAGAA
CTACCCAGAGGTACTGGAGGGAGTGCAGTTCCTCACCGTTCTGGAGGAGA
GGTATTCCAACCCGTACTATGCATTGGAAATGGACCATTGGCAGGATATG
ACAGACTTACAGGTGGTCAGGGAAGGGCTACAGAGCAACCAGCTTTCTCT
GGCCTACAGCCTTGTGCTATGGAGGGCAATTTGCCGGAGGGAAGAGGGCA
GCGAAGGAGGAGAGAGCTTGCCGAGCATGGAGGACATTATGACAGCTGGC
TTTTGCTTTGTGTACCAGTGTCTTACCACGGGCGATATGGACATGGCCGA
CAAGATGCTCTCTTGCGTTGGCGAGACTCGAGTGGAGGTGCTGTTGGAAG
TTCTCCTCCACACGAAGAGGAAGGCTTTGCGACAGAGCCTCCTCCGATTC
TTGTCTTCCCGTGGAGCGGTTGTTGAGAACTACCCAGAGGTACTGGAGGG
AGTGCAGTTCCTCACCGTTCTGGAGGAGAGGTATTCCAACCCGTACTATG
CATTGGAA
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