mRNA_M-pyrifera_M_contig118549.3832.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118549.3832.1
Unique NamemRNA_M-pyrifera_M_contig118549.3832.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118549.3832.1 vs. uniprot
Match: A0A2E7K4W8_9PLAN (Uncharacterized protein n=10 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K4W8_9PLAN)

HSP 1 Score: 347 bits (891), Expect = 1.410e-112
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 1
Query:    1 TVSRQIEVEPVQPSQKPMVQNVSLSQPKREIVPPNSAAALCPNASGEVLYLVKQLDSSDVPELKQAVQRLGAMEAEAIASVPALRSLSLHENMGVRIQSAFALWRIEGNTDDSVPTLIEAMNSQVETDRSFAAAVLSQIGHQSQELTPILVRSLSDSNPYVRLHTAELLARNPDWKYQAHKT 546
            TVSRQIEVEPVQPSQKPMVQNVSLSQPKREIVPPNSAAALCPNASGEVLYLVKQLDSSDVPELKQAVQRLGAMEAEAIASVPALRSLSLHENMGVRIQSAFALWRIEGNTDDSVPTLIEAMNSQVE+DRSFAAAVLSQIGHQSQELTPILVRSLSDSNPYVRLHTAELLARNPDWKYQAHKT
Sbjct:  533 TVSRQIEVEPVQPSQKPMVQNVSLSQPKREIVPPNSAAALCPNASGEVLYLVKQLDSSDVPELKQAVQRLGAMEAEAIASVPALRSLSLHENMGVRIQSAFALWRIEGNTDDSVPTLIEAMNSQVESDRSFAAAVLSQIGHQSQELTPILVRSLSDSNPYVRLHTAELLARNPDWKYQAHKT 714          
BLAST of mRNA_M-pyrifera_M_contig118549.3832.1 vs. uniprot
Match: A0A518A0D0_9PLAN (Invasion protein regulator n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A0D0_9PLAN)

HSP 1 Score: 319 bits (818), Expect = 8.820e-102
Identity = 164/182 (90.11%), Postives = 178/182 (97.80%), Query Frame = 1
Query:    1 TVSRQIEVEPVQPSQKPMVQNVSLSQPKREIVPPNSAAALCPNASGEVLYLVKQLDSSDVPELKQAVQRLGAMEAEAIASVPALRSLSLHENMGVRIQSAFALWRIEGNTDDSVPTLIEAMNSQVETDRSFAAAVLSQIGHQSQELTPILVRSLSDSNPYVRLHTAELLARNPDWKYQAHKT 546
            TVSRQIEVEPVQP QKP+VQNVSLSQPKREIVPP+SAAALCPNASGEVLYLVKQLDS DVPELKQA+QRLGAMEAEAIASVPALRSLSLH+NMGVRIQSAF+LW+IEGNTDDSVPTLIEAMNS VE+DRSFAAAVL+QIG+QSQELTPILVRSLSD+N YVRLHTAELLAR+P+W+YQA+KT
Sbjct:  529 TVSRQIEVEPVQPVQKPVVQNVSLSQPKREIVPPDSAAALCPNASGEVLYLVKQLDSQDVPELKQAIQRLGAMEAEAIASVPALRSLSLHDNMGVRIQSAFSLWKIEGNTDDSVPTLIEAMNSSVESDRSFAAAVLAQIGYQSQELTPILVRSLSDNNAYVRLHTAELLARDPEWRYQANKT 710          
BLAST of mRNA_M-pyrifera_M_contig118549.3832.1 vs. uniprot
Match: A6C9U9_9PLAN (Uncharacterized protein n=9 Tax=Planctomycetaceae TaxID=126 RepID=A6C9U9_9PLAN)

HSP 1 Score: 269 bits (688), Expect = 8.630e-83
Identity = 135/182 (74.18%), Postives = 163/182 (89.56%), Query Frame = 1
Query:    1 TVSRQIEVEPVQPSQKPMVQNVSLSQPKREIVPPNSAAALCPNASGEVLYLVKQLDSSDVPELKQAVQRLGAMEAEAIASVPALRSLSLHENMGVRIQSAFALWRIEGNTDDSVPTLIEAMNSQVETDRSFAAAVLSQIGHQSQELTPILVRSLSDSNPYVRLHTAELLARNPDWKYQAHKT 546
            TVSRQ+E++PV  + K +VQ  S+SQPK++++ PN+A ALCP A GEVL LV++L+S+ VPELKQ +QRLGAME+EA A+VPALRSLSLH+NMGVRIQ AF+LW+IEGNTDDSVPTLI+AMNS VE+DRSFAAAVL+QIG+ SQELTPILVRSLSD+N YVRLHTAELLAR+ DWKYQA+KT
Sbjct:  511 TVSRQVEIQPVAQNPKLVVQTASVSQPKQDLIQPNTAEALCPEAEGEVLSLVRELNSNQVPELKQTIQRLGAMESEAAAAVPALRSLSLHDNMGVRIQCAFSLWKIEGNTDDSVPTLIDAMNSSVESDRSFAAAVLAQIGYHSQELTPILVRSLSDNNEYVRLHTAELLARDSDWKYQANKT 692          
BLAST of mRNA_M-pyrifera_M_contig118549.3832.1 vs. uniprot
Match: A0A517W3J1_9PLAN (Tetratricopeptide repeat protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W3J1_9PLAN)

HSP 1 Score: 263 bits (672), Expect = 2.130e-80
Identity = 137/182 (75.27%), Postives = 159/182 (87.36%), Query Frame = 1
Query:    1 TVSRQIEVEPVQPSQKPMVQNVSLSQPKREIVPPNSAAALCPNASGEVLYLVKQLDSSDVPELKQAVQRLGAMEAEAIASVPALRSLSLHENMGVRIQSAFALWRIEGNTDDSVPTLIEAMNSQVETDRSFAAAVLSQIGHQSQELTPILVRSLSDSNPYVRLHTAELLARNPDWKYQAHKT 546
            TVSRQ+EV+PV  S+K  VQN  +S+PK E   P +AA +CP A+GEVL LVKQLD+ DVP LKQAVQRLGAME+EA A+ PALRSL+LHENMGVRIQ AF+LW+IEGNTDDS+PTLI+AMNS VE+DRSFAAAVLSQ+G QSQELTPILVRSLSD+N YVRLHTAELLARNP+W+ QA+KT
Sbjct:  518 TVSRQVEVQPVLKSKKTFVQNAIVSRPKPETAQPMTAADMCPAATGEVLKLVKQLDAHDVPTLKQAVQRLGAMESEATAATPALRSLTLHENMGVRIQCAFSLWKIEGNTDDSIPTLIDAMNSFVESDRSFAAAVLSQMGTQSQELTPILVRSLSDTNEYVRLHTAELLARNPEWQSQANKT 699          
BLAST of mRNA_M-pyrifera_M_contig118549.3832.1 vs. uniprot
Match: A0A355G8S1_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355G8S1_9PLAN)

HSP 1 Score: 259 bits (663), Expect = 3.850e-79
Identity = 135/183 (73.77%), Postives = 162/183 (88.52%), Query Frame = 1
Query:    1 TVSRQIEVEPVQPSQKPMVQNVSLSQPKRE-IVPPNSAAALCPNASGEVLYLVKQLDSSDVPELKQAVQRLGAMEAEAIASVPALRSLSLHENMGVRIQSAFALWRIEGNTDDSVPTLIEAMNSQVETDRSFAAAVLSQIGHQSQELTPILVRSLSDSNPYVRLHTAELLARNPDWKYQAHKT 546
            T+S+QIE  PV  +QK +VQ  S+SQPK++ ++ PN+A ALCP+A GEVL LV++L+S+ VPELKQA+QRLGAMEAEA A+VPALRSLSLHENMGVRIQ AF+LW+I GNTDDSVPTL++AMNS VE+DRSFAAAVL+QIG  SQELTPILVRSLSD+N YVRLHTAELLAR+ +WKYQA+KT
Sbjct:  509 TLSQQIESRPVTQNQKLVVQTASVSQPKKQDLIQPNTAEALCPDAQGEVLSLVRELNSNQVPELKQAIQRLGAMEAEAAAAVPALRSLSLHENMGVRIQCAFSLWKIAGNTDDSVPTLMDAMNSSVESDRSFAAAVLAQIGVHSQELTPILVRSLSDNNEYVRLHTAELLARDSEWKYQANKT 691          
BLAST of mRNA_M-pyrifera_M_contig118549.3832.1 vs. uniprot
Match: A0A518I622_9PLAN (Tetratricopeptide repeat protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A518I622_9PLAN)

HSP 1 Score: 208 bits (530), Expect = 6.620e-60
Identity = 109/146 (74.66%), Postives = 125/146 (85.62%), Query Frame = 1
Query:    4 VSRQIEVEPVQPSQKPMVQNVSLSQPKREIVPPNSAAALCPNASGEVLYLVKQLDSSDVPELKQAVQRLGAMEAEAIASVPALRSLSLHENMGVRIQSAFALWRIEGNTDDSVPTLIEAMNSQVETDRSFAAAVLSQIGHQSQELT 441
            VSRQIEV+PV  S++P VQN  +SQPK E+  P +A  +CP+A GEV  LV QLDS +VP LKQA+QRLGAME EAIASVPALRSLSLHENMGVRIQ AF+LW+IEGNTDDS+PTLI+AMNS VE+DRSFAAAVL+QIG QSQELT
Sbjct:  515 VSRQIEVQPVVQSKQPFVQNAVVSQPKPEVTQPMTAVGMCPDAKGEVRRLVGQLDSIEVPMLKQAIQRLGAMEGEAIASVPALRSLSLHENMGVRIQCAFSLWKIEGNTDDSIPTLIDAMNSSVESDRSFAAAVLAQIGFQSQELT 660          
BLAST of mRNA_M-pyrifera_M_contig118549.3832.1 vs. uniprot
Match: A0A517VEJ2_9PLAN (Tetratricopeptide repeat protein n=2 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VEJ2_9PLAN)

HSP 1 Score: 203 bits (517), Expect = 4.540e-58
Identity = 106/147 (72.11%), Postives = 127/147 (86.39%), Query Frame = 1
Query:    1 TVSRQIEVEPVQPSQKPMVQNVSLSQPKREIVPPNSAAALCPNASGEVLYLVKQLDSSDVPELKQAVQRLGAMEAEAIASVPALRSLSLHENMGVRIQSAFALWRIEGNTDDSVPTLIEAMNSQVETDRSFAAAVLSQIGHQSQELT 441
            TVSRQ E++ V  + K +VQ  S+SQPK++++ PN+A  LCP+A GEVL LV++L+SS VPELK AVQRLGAMEAEA A+VPALRSLSLH+NMGVRIQ AF+LW+IEGNTDDSVPTLI+AMNS VE+DRSFAAAVL+QIG  SQELT
Sbjct:  511 TVSRQDELQTVTQNPKLVVQTASVSQPKQDLIQPNTAETLCPDAQGEVLSLVRELNSSQVPELKHAVQRLGAMEAEAAAAVPALRSLSLHDNMGVRIQCAFSLWKIEGNTDDSVPTLIDAMNSSVESDRSFAAAVLAQIGFHSQELT 657          
BLAST of mRNA_M-pyrifera_M_contig118549.3832.1 vs. uniprot
Match: A0A3L7SNY0_9BACT (HEAT repeat domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7SNY0_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 9.810e-8
Identity = 31/83 (37.35%), Postives = 52/83 (62.65%), Query Frame = 1
Query:  115 ALCPNASGEVLYLVKQLDSSDVPELKQAVQRLGAMEAEAIASVPALRSLSLHENMGVRIQSAFALWRIEGNTDDSVPTLIEAM 363
            ALCP A GE+L L+K +DSS    LK+ + ++G + A+  A+ P L+S   HE+  VR  +A A+ R++  ++ SV  + +A+
Sbjct:  310 ALCPQAEGELLSLLKGMDSSSPDSLKRGLSQIGQLGAKGAAATPLLQSFLKHEDAFVRTHAALAMARLKLTSNQSVHVVTDAL 392          
BLAST of mRNA_M-pyrifera_M_contig118549.3832.1 vs. uniprot
Match: A0A2D6SVU5_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SVU5_9PLAN)

HSP 1 Score: 53.1 bits (126), Expect = 1.950e-5
Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 1
Query:  268 HENMGVRIQSAFALWRIEGNTDDSVPTLIEAM-NSQVETDRSFAAAVLSQIGHQSQELTPILVRSLSDSNPYVRLHTAE 501
            HE +  R++ A A+WRI GNT+D++P ++E + N +   DR  AA  LS+ G  ++   P L  +L     Y  L   E
Sbjct:   72 HELLIFRLEPALAIWRITGNTEDTIPVIVEVLQNVEPPLDRFSAALTLSEFGPAAKSAIPALQAALELPEAYKDLEDGE 150          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118549.3832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A2E7K4W8_9PLAN1.410e-11299.45Uncharacterized protein n=10 Tax=Gimesia TaxID=164... [more]
A0A518A0D0_9PLAN8.820e-10290.11Invasion protein regulator n=3 Tax=Gimesia panaree... [more]
A6C9U9_9PLAN8.630e-8374.18Uncharacterized protein n=9 Tax=Planctomycetaceae ... [more]
A0A517W3J1_9PLAN2.130e-8075.27Tetratricopeptide repeat protein n=2 Tax=Gimesia a... [more]
A0A355G8S1_9PLAN3.850e-7973.77Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A518I622_9PLAN6.620e-6074.66Tetratricopeptide repeat protein n=4 Tax=Gimesia T... [more]
A0A517VEJ2_9PLAN4.540e-5872.11Tetratricopeptide repeat protein n=2 Tax=Gimesia a... [more]
A0A3L7SNY0_9BACT9.810e-837.35HEAT repeat domain-containing protein n=1 Tax=Plan... [more]
A0A2D6SVU5_9PLAN1.950e-535.44Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118549contigM-pyrifera_M_contig118549:2..547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score270.8
Seed ortholog evalue4.7e-70
Seed eggNOG ortholog344747.PM8797T_07152
Hectar predicted targeting categoryother localisation
EggNOG free text desc.deoxyhypusine monooxygenase activity
EggNOG OGsCOG0457@1,COG0457@2,COG1413@1,COG1413@2
COG Functional cat.C
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size546
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.0968366-CDS-M-pyrifera_M_contig118549:1..5471622815705.0968366-CDS-M-pyrifera_M_contig118549:1..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118549 2..547 +
1692277530.672026-CDS-M-pyrifera_M_contig118549:1..5471692277530.672026-CDS-M-pyrifera_M_contig118549:1..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118549 2..547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118549.3832.1prot_M-pyrifera_M_contig118549.3832.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118549 2..547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118549.3832.1

>prot_M-pyrifera_M_contig118549.3832.1 ID=prot_M-pyrifera_M_contig118549.3832.1|Name=mRNA_M-pyrifera_M_contig118549.3832.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=182bp
TVSRQIEVEPVQPSQKPMVQNVSLSQPKREIVPPNSAAALCPNASGEVLY
LVKQLDSSDVPELKQAVQRLGAMEAEAIASVPALRSLSLHENMGVRIQSA
FALWRIEGNTDDSVPTLIEAMNSQVETDRSFAAAVLSQIGHQSQELTPIL
VRSLSDSNPYVRLHTAELLARNPDWKYQAHKT
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mRNA from alignment at M-pyrifera_M_contig118549:2..547+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118549.3832.1 ID=mRNA_M-pyrifera_M_contig118549.3832.1|Name=mRNA_M-pyrifera_M_contig118549.3832.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig118549:2..547+ (Macrocystis pyrifera P11B4 male)
ACGGTTTCCCGGCAGATCGAAGTTGAGCCGGTACAGCCCAGCCAGAAGCC GATGGTACAGAACGTGAGCCTCAGCCAGCCCAAGCGGGAAATCGTACCTC CCAATTCGGCAGCCGCTCTCTGTCCCAATGCCAGTGGTGAAGTCCTGTAC CTGGTCAAACAGTTGGATTCCAGTGATGTGCCCGAACTGAAACAGGCAGT CCAGCGACTGGGAGCGATGGAAGCAGAAGCGATTGCTTCGGTTCCCGCTC TGCGTTCTCTGTCACTGCATGAGAATATGGGTGTGCGGATTCAAAGCGCA TTCGCATTATGGAGAATCGAAGGGAATACCGATGATTCCGTGCCGACTTT GATTGAAGCCATGAATTCCCAGGTGGAAACTGATCGTTCATTCGCGGCAG CTGTGCTGTCACAGATTGGTCATCAGTCACAGGAACTGACACCGATTCTG GTTCGCTCACTCTCGGACAGCAATCCTTACGTTCGCCTGCATACAGCTGA ACTGCTGGCCCGGAATCCGGACTGGAAATATCAGGCTCATAAGACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118549:2..547+

>mRNA_M-pyrifera_M_contig118549.3832.1 ID=mRNA_M-pyrifera_M_contig118549.3832.1|Name=mRNA_M-pyrifera_M_contig118549.3832.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1092bp|location=Sequence derived from alignment at M-pyrifera_M_contig118549:2..547+ (Macrocystis pyrifera P11B4 male)
ACGGTTTCCCGGCAGATCGAAGTTGAGCCGGTACAGCCCAGCCAGAAGCC
GATGGTACAGAACGTGAGCCTCAGCCAGCCCAAGCGGGAAATCGTACCTC
CCAATTCGGCAGCCGCTCTCTGTCCCAATGCCAGTGGTGAAGTCCTGTAC
CTGGTCAAACAGTTGGATTCCAGTGATGTGCCCGAACTGAAACAGGCAGT
CCAGCGACTGGGAGCGATGGAAGCAGAAGCGATTGCTTCGGTTCCCGCTC
TGCGTTCTCTGTCACTGCATGAGAATATGGGTGTGCGGATTCAAAGCGCA
TTCGCATTATGGAGAATCGAAGGGAATACCGATGATTCCGTGCCGACTTT
GATTGAAGCCATGAATTCCCAGGTGGAAACTGATCGTTCATTCGCGGCAG
CTGTGCTGTCACAGATTGGTCATCAGTCACAGGAACTGACACCGATTCTG
GTTCGCTCACTCTCGGACAGCAATCCTTACGTTCGCCTGCATACAGCTGA
ACTGCTGGCCCGGAATCCGGACTGGAAATATCAGGCTCATAAGACAACGG
TTTCCCGGCAGATCGAAGTTGAGCCGGTACAGCCCAGCCAGAAGCCGATG
GTACAGAACGTGAGCCTCAGCCAGCCCAAGCGGGAAATCGTACCTCCCAA
TTCGGCAGCCGCTCTCTGTCCCAATGCCAGTGGTGAAGTCCTGTACCTGG
TCAAACAGTTGGATTCCAGTGATGTGCCCGAACTGAAACAGGCAGTCCAG
CGACTGGGAGCGATGGAAGCAGAAGCGATTGCTTCGGTTCCCGCTCTGCG
TTCTCTGTCACTGCATGAGAATATGGGTGTGCGGATTCAAAGCGCATTCG
CATTATGGAGAATCGAAGGGAATACCGATGATTCCGTGCCGACTTTGATT
GAAGCCATGAATTCCCAGGTGGAAACTGATCGTTCATTCGCGGCAGCTGT
GCTGTCACAGATTGGTCATCAGTCACAGGAACTGACACCGATTCTGGTTC
GCTCACTCTCGGACAGCAATCCTTACGTTCGCCTGCATACAGCTGAACTG
CTGGCCCGGAATCCGGACTGGAAATATCAGGCTCATAAGACA
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