mRNA_M-pyrifera_M_contig118540.3830.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118540.3830.1
Unique NamemRNA_M-pyrifera_M_contig118540.3830.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118540.3830.1 vs. uniprot
Match: A0A7S2GMH3_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GMH3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 5.480e-19
Identity = 52/122 (42.62%), Postives = 73/122 (59.84%), Query Frame = 1 
Query:   13 ALCLVTGHV---------RQGGEGRLTRFATRQLNGLGVWLLLSSSMATKLVLMRGRFAIWYASPYVDKHGEEDVGLRRGMPLTLSTERYKALQTLWASGEITRLVTRVRSQADRVIIEGHY 351
            ALCL+TG V         R+   G  TR+A R   G G++LL+       ++L+R + A ++ S YVD +GEED G+RRG PL+LS +RY AL+ L+AS  +   V R+RS   RVII  +Y
Sbjct:  186 ALCLITGAVLTAGGKGSGRRAHAGGCTRYANRHGGGTGIFLLVRQCT---VLLVRYQHAAYFPSIYVDDNGEEDRGMRRGKPLSLSNDRYAALEALYASHRVASEVARLRSSGSRVIIRDNY 304
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BLAST of mRNA_M-pyrifera_M_contig118540.3830.1 vs. uniprot
Match: A0A7S2LK20_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LK20_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 9.540e-19
Identity = 50/126 (39.68%), Postives = 74/126 (58.73%), Query Frame = 1 
Query:   13 ALCLVTGHV-------------RQGGEGRLTRFATRQLNGLGVWLLLSSSMATKLVLMRGRFAIWYASPYVDKHGEEDVGLRRGMPLTLSTERYKALQTLWASGEITRLVTRVRSQADRVIIEGHY 351
            A+C+VTGHV             +  G G+ T+ A R   G+G++ LL   +   ++L+    + +  S YVD+HGEEDVGLRRG PL L  +RY+ LQ LW+  ++ R V ++RS +DRVI +  Y
Sbjct: 1292 AICMVTGHVMLAGSSSRNGFFRQSSGPGQCTQHAERTGAGIGIFFLLHKCV---VLLIHNNKSAYSLSLYVDEHGEEDVGLRRGRPLYLHKDRYECLQKLWSQHDVPREVAQIRSTSDRVIRDNWY 1414
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BLAST of mRNA_M-pyrifera_M_contig118540.3830.1 vs. uniprot
Match: A0A7S2DU58_9STRA (E3 ubiquitin-protein ligase n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DU58_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.280e-18
Identity = 52/122 (42.62%), Postives = 73/122 (59.84%), Query Frame = 1 
Query:   13 ALCLVTGHV---------RQGGEGRLTRFATRQLNGLGVWLLLSSSMATKLVLMRGRFAIWYASPYVDKHGEEDVGLRRGMPLTLSTERYKALQTLWASGEITRLVTRVRSQADRVIIEGHY 351
            ALCL+TG V         R+   G  TR+A R   G G++LL+       ++L+R + A ++ S YVD +GEED G+RRG PL+LS +RY AL+ L+AS  +   V R+RS   RVII  +Y
Sbjct:  270 ALCLITGAVLTAGGKGSGRRAHAGGCTRYANRHGGGTGIFLLVRQCT---VLLVRYQHAAYFPSIYVDDNGEEDRGMRRGKPLSLSNDRYAALEALYASHRVASEVARLRSSGSRVIIRDNY 388
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BLAST of mRNA_M-pyrifera_M_contig118540.3830.1 vs. uniprot
Match: A0A7S1Z2B5_TRICV (E3 ubiquitin-protein ligase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2B5_TRICV)

HSP 1 Score: 80.5 bits (197), Expect = 6.860e-17
Identity = 49/128 (38.28%), Postives = 70/128 (54.69%), Query Frame = 1 
Query:   10 SALCLVTGHVRQGGEGRLTRFATRQL--------------NGLGVWLLLSSSMATKLVLMRGRFAIWYASPYVDKHGEEDVGLRRGMPLTLSTERYKALQTLWASGEITRLVTRVRSQADRVIIEGHY 351
            +A+CL+TG +   G  R  R  TR                +G+G++ L+       ++L+    + + AS YVD+HGEED GLRRG PL L  ERY+AL+ LW    I R V ++RS +DRVI +  Y
Sbjct:   24 TAICLLTGAIMSSGSSR--RHYTRSTKPPGSCTLHARWVGSGIGIFFLVQKCT---VLLVHNNKSAYSASLYVDEHGEEDPGLRRGRPLFLKDERYEALEALWRRHGIPREVAQIRSTSDRVIRDNWY 146
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BLAST of mRNA_M-pyrifera_M_contig118540.3830.1 vs. uniprot
Match: A0A7S0F4Q9_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F4Q9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.450e-16
Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 1 
Query:   10 SALCLVTGHVRQGGE------------GRLTRFATRQLNGLGVWLLLSSSMATKLVLMRGRFAIWYASPYVDKHGEEDVGLRRGMPLTLSTERYKALQTLWASGEITRLVTRVRSQADRVIIEGHY 351
            +A+CL+TG V + G             G  T  A +  +G+G++ L+       ++LM    + +  S YVD+HGEED  LRRG PL L+ ERY+AL+ LW    I R V ++RS +DRVI +  Y
Sbjct:  234 TAICLLTGAVMRSGSVRRPPYTSKRPPGACTLHARKNGSGIGIFFLVQKCT---VLLMHNNKSAYSPSLYVDEHGEEDPSLRRGRPLFLNAERYRALEVLWRQQGIPREVAQIRSTSDRVIRDNWY 356
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BLAST of mRNA_M-pyrifera_M_contig118540.3830.1 vs. uniprot
Match: A0A7S1GNK1_CYCTE (E3 ubiquitin-protein ligase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNK1_CYCTE)

HSP 1 Score: 82.8 bits (203), Expect = 3.760e-16
Identity = 50/126 (39.68%), Postives = 71/126 (56.35%), Query Frame = 1 
Query:   10 SALCLVTGHVRQGGE------------GRLTRFATRQLNGLGVWLLLSSSMATKLVLMRGRFAIWYASPYVDKHGEEDVGLRRGMPLTLSTERYKALQTLWASGEITRLVTRVRSQADRVIIEGHY 351
            +A+CL+TG V + G             G  T  A +  +G+GV+ L+       ++LM    + +  S YVD+HGEED GLRRG PL L+  RY+AL+TLW    I R V ++RS +DRVI +  Y
Sbjct:  316 TAICLLTGAVMRSGAPRRSYNRATRPAGACTLHARQVGSGIGVFFLVQKCT---VLLMHNNKSAYSPSLYVDQHGEEDPGLRRGRPLFLNEARYRALETLWRQQGIPREVAQIRSTSDRVIRDNWY 438
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BLAST of mRNA_M-pyrifera_M_contig118540.3830.1 vs. uniprot
Match: B8C846_THAPS (E3 ubiquitin-protein ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C846_THAPS)

HSP 1 Score: 82.4 bits (202), Expect = 6.680e-16
Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = 1 
Query:   10 SALCLVTGHVRQGGE-----------GRLTRFATRQLNGLGVWLLLSSSMATKLVLMRGRFAIWYASPYVDKHGEEDVGLRRGMPLTLSTERYKALQTLWASGEITRLVTRVRSQADRVIIEGHY 351
            +A+CL+TG V + G            G  T  A +  +G+G++ L+       ++LM    + +  S YVD+HGEEDVGLRRG PL  S ER +AL+ LW +  I R V+++RS +DRVI +  Y
Sbjct: 3372 TAICLLTGAVMKSGTIRRTKRDFRPPGACTLHARKVGSGIGIFFLVQKCT---ILLMHNNKSAYSPSLYVDEHGEEDVGLRRGRPLFFSEERNQALERLWRTHGIPREVSQIRSTSDRVIRDNWY 3493
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BLAST of mRNA_M-pyrifera_M_contig118540.3830.1 vs. uniprot
Match: A0A7S0C9S2_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9S2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.040e-15
Identity = 50/129 (38.76%), Postives = 71/129 (55.04%), Query Frame = 1 
Query:    1 GEVSALCLVTGHVRQGGE------------GRLTRFATRQLNGLGVWLLLSSSMATKLVLMRGRFAIWYASPYVDKHGEEDVGLRRGMPLTLSTERYKALQTLWASGEITRLVTRVRSQADRVIIEGHY 351
            G  +A+CL+TG V + G             G  T  A +  +G+GV+ L+       ++LM    + + AS YVD+HGEED GLRRG PL L   RY++L+ LW    I R V ++RS +DRVI +  Y
Sbjct:  347 GSETAICLLTGSVMRSGSLRRSLITPSRPHGSCTVHARKVGSGIGVFFLVQKCT---VLLMHNNKSAYSASLYVDEHGEEDPGLRRGRPLFLKKTRYESLKFLWRQHGIPREVAQIRSTSDRVIRDNWY 472
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BLAST of mRNA_M-pyrifera_M_contig118540.3830.1 vs. uniprot
Match: B7G3L3_PHATC (E3 ubiquitin-protein ligase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3L3_PHATC)

HSP 1 Score: 80.5 bits (197), Expect = 2.920e-15
Identity = 47/127 (37.01%), Postives = 70/127 (55.12%), Query Frame = 1 
Query:   10 SALCLVTGHVRQGGEGRLTRF-------------ATRQLNGLGVWLLLSSSMATKLVLMRGRFAIWYASPYVDKHGEEDVGLRRGMPLTLSTERYKALQTLWASGEITRLVTRVRSQADRVIIEGHY 351
            +A+CL+TG V + G  R + +             A +  +G+G++ L+       ++LM    + +  S YVD+HGEED GLRRG PL L+  RY AL+ LW    I R V ++RS +DRVI +  Y
Sbjct:  547 TAICLLTGTVMRSGSARRSGYNRAHRLAGACTIHARKNGSGIGIFFLVQKCT---VLLMHNNKSAYSPSLYVDEHGEEDPGLRRGRPLFLNQARYHALEQLWRQNGIPREVAQIRSTSDRVIRDNWY 670
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BLAST of mRNA_M-pyrifera_M_contig118540.3830.1 vs. uniprot
Match: A0A7S2MIJ1_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MIJ1_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.220e-15
Identity = 46/126 (36.51%), Postives = 70/126 (55.56%), Query Frame = 1 
Query:   10 SALCLVTGHVRQGGEGR------------LTRFATRQLNGLGVWLLLSSSMATKLVLMRGRFAIWYASPYVDKHGEEDVGLRRGMPLTLSTERYKALQTLWASGEITRLVTRVRSQADRVIIEGHY 351
            +A+CL+TG + + G  R             T  A +  +G+G++ L+       ++LM    + +  S YVD+HGEED GLRRG PL L  ER+++L+ LW    I R V ++RS +DRVI +  Y
Sbjct:  281 TAICLLTGSIMRSGSSRRAFPRSSRQPGACTLHARKVGSGVGIFFLVQKCT---VLLMHNNKSAYSPSLYVDEHGEEDPGLRRGRPLFLKNERFQSLEMLWRQHGIPREVAQIRSTSDRVIRDNWY 403
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118540.3830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2GMH3_9STRA5.480e-1942.62E3 ubiquitin-protein ligase n=1 Tax=Dictyocha spec... [more]
A0A7S2LK20_9STRA9.540e-1939.68E3 ubiquitin-protein ligase n=1 Tax=Leptocylindrus... [more]
A0A7S2DU58_9STRA1.280e-1842.62E3 ubiquitin-protein ligase n=2 Tax=Dictyocha spec... [more]
A0A7S1Z2B5_TRICV6.860e-1738.28E3 ubiquitin-protein ligase n=1 Tax=Trieres chinen... [more]
A0A7S0F4Q9_9STRA3.450e-1638.10E3 ubiquitin-protein ligase n=1 Tax=Craspedostauro... [more]
A0A7S1GNK1_CYCTE3.760e-1639.68E3 ubiquitin-protein ligase n=1 Tax=Cyclophora ten... [more]
B8C846_THAPS6.680e-1639.20E3 ubiquitin-protein ligase n=1 Tax=Thalassiosira ... [more]
A0A7S0C9S2_9STRA1.040e-1538.76E3 ubiquitin-protein ligase n=1 Tax=Proboscia iner... [more]
B7G3L3_PHATC2.920e-1537.01E3 ubiquitin-protein ligase n=2 Tax=Phaeodactylum ... [more]
A0A7S2MIJ1_9STRA4.220e-1536.51E3 ubiquitin-protein ligase n=1 Tax=Helicotheca ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118540contigM-pyrifera_M_contig118540:154..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue6.9e-14
Seed eggNOG ortholog159749.K0TG36
KEGG koko:K10625,ko:K10626,ko:K11978
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000280,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010029,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010528,GO:0010529,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0016043,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016597,GO:0016740,GO:0019216,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0032006,GO:0032007,GO:0032446,GO:0032501,GO:0032504,GO:0032991,GO:0033522,GO:0033993,GO:0034641,GO:0035825,GO:0036094,GO:0036211,GO:0040029,GO:0042221,GO:0043161,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043200,GO:0043201,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048232,GO:0048285,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050832,GO:0050896,GO:0050994,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061630,GO:0061659,GO:0061982,GO:0065007,GO:0070647,GO:0070728,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071596,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097305,GO:0098542,GO:0140013,GO:0140096,GO:1900140,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.ubiquitin-dependent protein catabolic process via the N-end rule pathway
EggNOG OGs2XE2G@2836,KOG1139@1,KOG1139@2759,KOG1140@1,KOG1140@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_002440.1
EC2.3.2.27
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.0136926-CDS-M-pyrifera_M_contig118540:153..5071622815705.0136926-CDS-M-pyrifera_M_contig118540:153..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118540 154..507 -
1692277530.6358736-CDS-M-pyrifera_M_contig118540:153..5071692277530.6358736-CDS-M-pyrifera_M_contig118540:153..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118540 154..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118540.3830.1prot_M-pyrifera_M_contig118540.3830.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118540 154..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118540.3830.1

>prot_M-pyrifera_M_contig118540.3830.1 ID=prot_M-pyrifera_M_contig118540.3830.1|Name=mRNA_M-pyrifera_M_contig118540.3830.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
GEVSALCLVTGHVRQGGEGRLTRFATRQLNGLGVWLLLSSSMATKLVLMR
GRFAIWYASPYVDKHGEEDVGLRRGMPLTLSTERYKALQTLWASGEITRL
VTRVRSQADRVIIEGHY*
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mRNA from alignment at M-pyrifera_M_contig118540:154..507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118540.3830.1 ID=mRNA_M-pyrifera_M_contig118540.3830.1|Name=mRNA_M-pyrifera_M_contig118540.3830.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig118540:154..507- (Macrocystis pyrifera P11B4 male)
GGGGAGGTGAGTGCCTTGTGTTTGGTGACAGGTCATGTGCGGCAAGGTGG
GGAGGGAAGGTTGACGAGATTTGCCACAAGACAGCTCAATGGATTGGGAG
TGTGGTTGCTCCTCTCCTCCTCCATGGCCACAAAGCTCGTGCTCATGCGA
GGAAGGTTCGCCATTTGGTACGCCTCACCCTACGTCGACAAACACGGCGA
AGAAGACGTCGGCCTGCGCAGAGGAATGCCCCTCACGCTCTCCACAGAAC
GATACAAGGCACTCCAAACTCTCTGGGCCTCTGGAGAAATCACCAGACTT
GTCACCAGGGTCAGGTCCCAAGCAGACAGAGTCATCATAGAAGGACACTA
CTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118540:154..507-

>mRNA_M-pyrifera_M_contig118540.3830.1 ID=mRNA_M-pyrifera_M_contig118540.3830.1|Name=mRNA_M-pyrifera_M_contig118540.3830.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig118540:154..507- (Macrocystis pyrifera P11B4 male)
GGGGAGGTGAGTGCCTTGTGTTTGGTGACAGGTCATGTGCGGCAAGGTGG
GGAGGGAAGGTTGACGAGATTTGCCACAAGACAGCTCAATGGATTGGGAG
TGTGGTTGCTCCTCTCCTCCTCCATGGCCACAAAGCTCGTGCTCATGCGA
GGAAGGTTCGCCATTTGGTACGCCTCACCCTACGTCGACAAACACGGCGA
AGAAGACGTCGGCCTGCGCAGAGGAATGCCCCTCACGCTCTCCACAGAAC
GATACAAGGCACTCCAAACTCTCTGGGCCTCTGGAGAAATCACCAGACTT
GTCACCAGGGTCAGGTCCCAAGCAGACAGAGTCATCATAGAAGGACACTA
CTAGGGGGAGGTGAGTGCCTTGTGTTTGGTGACAGGTCATGTGCGGCAAG
GTGGGGAGGGAAGGTTGACGAGATTTGCCACAAGACAGCTCAATGGATTG
GGAGTGTGGTTGCTCCTCTCCTCCTCCATGGCCACAAAGCTCGTGCTCAT
GCGAGGAAGGTTCGCCATTTGGTACGCCTCACCCTACGTCGACAAACACG
GCGAAGAAGACGTCGGCCTGCGCAGAGGAATGCCCCTCACGCTCTCCACA
GAACGATACAAGGCACTCCAAACTCTCTGGGCCTCTGGAGAAATCACCAG
ACTTGTCACCAGGGTCAGGTCCCAAGCAGACAGAGTCATCATAGAAGGAC
ACTACTAG
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